SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8037

Length: 1676 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene8037 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alba multi-domain protein	-	-	2.0e-17	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA/RNA-binding protein Alba-like	IPR002775	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACX9

Fln msg:

Fln protein: MDRYQRVEKPRPESAIHENEIRITTQGLIRNYISYAGSLLQERKAPEISLKAMGQAISKTVAVAEILKRRVPGLHQTTVISSTSIVDVWEPIEEGLLPLETTRHVSMISITLATKELDMKSPGYQAPLPIDQVKQPNAGVDGDMQGGIARERGRGRGRGRGRGWGRGWAVSYNGGYYNWGWGRGRGRGRRGRGRQVNMLEDGNAYNGQDSTNFAPRARGGVRGRGRGGRGRGMAANESVA*

Protein Length: 242

Fln nts: TTTGAATTGAATCCAATTTTAAAAGAAAGGAAGTGAATTAGGTTATGGACATTGGGGTTATCTTAAGCCTTCTTGGATGAGAAGGCAGGGGAAAATATATACAAGTTTCCATCTTCACGAATCCCACCCGGCCACCTGCTGAAAGATCAATAGAAACGAAACGGCTCATCACATTCTCCATTGCATGCATGCTACATATCTACCATCATCATCATATATAGAACACACACTCGTAAACATCAAGAAGAGACACAGATGCACCTTCTTGACTACTCCCTCTTGCACTTCCCACCTTTAAACTTGGCCTCTTCATCTGCTCATCCGGCTGATTATATTACTCGGGGTTTGCTTTTCTTAGGTCTGCTGTCTGTTTCAGTATGGTTTTTGTTGCAGAGATGGTGTTTATATCTGGGTATTGATTTTTAACTGAGATTTCTGGATTTTGGGTTTTCGAATTGATAGGGCATTTGAGGTCATCGAAGAGCCAGC_-_ATGGACAGATATCAAAGAGTCGAGAAGCCGAGACCTGAGTCGGCCATCCATGAGAATGAGATTCGTATCACCACCCAGGGGCTCATAAGGAATTACATCAGCTATGCCGGCAGTCTTTTACAGGAAAGAAAGGCACCAGAAATTTCCTTGAAGGCAATGGGTCAGGCAATAAGTAAAACCGTTGCTGTAGCTGAGATCTTAAAACGGCGGGTTCCTGGTTTGCATCAAACCACAGTTATTAGCTCAACAAGCATAGTTGATGTTTGGGAGCCTATTGAAGAAGGACTACTACCTCTGGAAACAACTCGACATGTTTCTATGATATCAATCACTTTGGCCACTAAGGAACTCGATATGAAGTCACCAGGTTACCAGGCTCCATTACCAATTGATCAGGTCAAACAACCAAATGCTGGTGTTGATGGAGATATGCAAGGTGGTATAGCTAGAGAACGTGGCAGAGGTAGAGGCAGAGGCAGAGGCAGGGGTTGGGGCCGAGGTTGGGCTGTTTCATATAATGGTGGCTATTATAATTGGGGGTGGGGTCGTGGCCGTGGTAGAGGTCGACGAGGACGTGGAAGGCAGGTGAATATGCTTGAAGACGGTAATGCTTATAATGGACAAGATTCAACTAATTTTGCTCCTCGAGCCCGTGGAGGTGTCAGAGGCAGAGGTCGAGGTGGTCGAGGAAGGGGAATGGCTGCAAATGAAAGTGTAGCTTGA___TTTCTAATCTGTTACATGCAATGAAGCTGTCTTGGTTTCTCTTGCAATATTTTAGACAAACTTCTTTGGAGCAATAACTGCTGGTTATTGTATGGTATGGGAATTATTCAGTTAGCATGTTCTTCATGTGAAATTTTGGTTGTTTATGTCGATATTATGTGAAACAAGAGCGCTTTAGCTGTGCATTTTTCCCCAGTGTTTCTGCCAGCAATAGCTGATTGTCGCTTGAGGCATGTTTACCTACCATTCTCATGTTCACATGGCATATTTGGGAATACTACACTCTTGTGGTTTTTAATCTCTGTAGCAATAGAGAGATTGAGGATTTGGGTTCACGGTGCTTTGCCATGTACATACGTTTTTGTAATTTCCAAGATATGAATTTCAATGTAAAGAGAATTTTGTACTGATAAAATGTCTCTCCTTGACAGTGTTGTTTCTGTGTAATCATTATCTCAGTTCAT

Fln Alignment:

sp_v1.1_unigene8037___MDRYQRVEKPRPESAIHENEIRITTQGLIRNYISYAGSLLQ-ERKAPEISLKAMGQAISKTVAVAEILKRRVPGLHQTTVISSTSIVDVWEPIEEGLLPLETTRHVSMISITLATKELDMKSPGYQAPLPIDQVKQPNAGVDGDMQXXXXXXXXXXXXXXXXXXXXXGWAVSY--XXXXXXXXXXXXXXXXXXXXXRQVNMLEDGNAYNGQDSTNFAPXXXXXXXXXXXXXXXXGMAANESVA
D5ACX9______________MDRYQRVEKPRPESAIHENEIRITTQGLIRNYISYAASLLQQERKAPEISLKAMGQAISKTVAVAEILKRRVPGLHQTTAISSTSIVDVWEPIEEGLLPLETTRHVSMISITLATKELDIKSPGYQAPLPIDQVKQANAGFDGDVQGGIARGRGRGRGRGRGRGWGRGWAIPYNGGGYYNWGWGRGRGRGGRRGRGRQMNMLEDGNGYNGPNSTNFAPRPRGGGRGRGRGGRGRGLTTNEVVA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1351	85			14	0.993533
1359	14		85		0.993533
1362			14	85	0.993533
1364	85			14	0.993533
1370		14		85	0.993533
1386	83			16	0.994512
1387	83	16			0.994512
1388	83	16			0.994512
1389		16	83		0.994512
1390	16		83		0.994512
1436		20		80	0.995493
1437		20		80	0.995493
1439		20		80	0.995493
1558		25	75		0.996473
1559		25	75		0.996473
1560		25	75		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
703	722	CTGCCT CTGCCT CTGCCT CT	20
1462	1473	ATG ATG ATG ATG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain