SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8018

Length: 2776 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene8018
AGGGGGTTTGTATTTCGTAATTTGTTTAGGTTTAAAATACCCGGTTGGGTTGTAGCCATGAAAGACCTTTGTGTAGTTAAAACGTTCAATTACTGTCGCAGACCTAACCTGTTAACTAAACCTCACTGGTCAAAATCCCAACCGTCGTGACCTTGGCTGTCACTTAGTTTTAACCGGGGTTTTCTTCTAGTTAATCGCTTGCTTGAGTCTGCCAACATGAGAATTGTGGTTGATTTTTGGGATGAGTAGTTGTTGACTCATGATTTTGGAGTCAATTTTCAAACTGGGTTGGGTCAAATTTGGTTTATCTTGTGATTTTTGTTCGATGGAGGGATCTAATTGGCTTCTGATGTCTGAGACTAATTTAGCAGATGTATATGTCCTCGGTGCATCTGCAAATCTTAGTCTGGCCAAAATTTCATCAATTAGGAGAGTCAGATTACCAACCAATTTCTTCAGTGTATATAATCTTGCTTTGTCTCGCTGAGTCCTGGAGCCATGAATCTAATTGCCTCCCATTTGGTCGATCATGTCATTTCTATTGATTTTGAAAACATAATTGTCTTGTTGGACAAGGTGTCAAGATAGTTTACAAAAGATCTAATTTAAAGGTTCGCTCTTCTGATTCTCCATTGACAAGATGAGCAACTCAAGAGCAAGTCAGCTCCAGCCATTGTCAGTCCCCAAATCCGAGTTTACGTGTTACAAGACCCCAAAGACTTGGTTCACAAGTCCTGTTTCTGTTGAAACAAGTCCGTTGAAACTGGAAAGCCCCATTGATTTTGAGATATTGGAGAGAGCATCTCCTTCAGCACGGTTTGGCATGGATATAGGTGGCACACTCTGCAAAGTTGTCTACTTTGAGCCAGCTAGAGAATTGTTCTCTCCAGGTGTGAATTTTGGCCAGAGTAGGAATGATACCAAATCTGTGAAACTCTGTGAAAATGATACAACAAAAATGGACAAAGGCAGAGGAAGGGTTAGTGCATTTGGTAAACCATCTGAAGATATGGATTCAGAGCCACCTTCAGATAAAGGAGAAAAATCCCATAAGGAGATCGGTGCTTGTGGTGCGCAACCTGCTGCCAGAATTGAGACACAGACTGATCGCTCTTTCGAAATGAACCCTGATTCGAGCAAATCACAGGAGCCGCTGCAGAATTCAGAATTTACAGATTCTAATATGCTGGATGGAAGACATGGAAAACCCTCGCCAGGATGTATTGATTTTAATAGTATTAAAACTTCTTTTTATGCACTTACAGAAGAACTGACAAATGAAGGAACACATTCTGCTAACTGTCCAGTAAGGAACGTCCGCAAAATATGGCTATCCAGTCATGCTCCTATTGTTCTGCCAGGTCGTGGAACACTTCATTTCAAATGTTTTGAGACTTGGAGAATGGAGGAATTTTTGAGACTCACAAGGGAACACTCTCTTGTTTGTCAGGATAGAGCCATTGGAGCAACTGGTGGCGGAGCTTGCAAATTTCTTGCCCGGTTTTCTGAAATTGCTGGCTTGCGGCTGGAGCACAATGATGAATTGAAGAGCTTGGTGCGAGGGATTGATTTTTTGGTCAAGATTGCTCAACATGAAAGCTTTGAGTATCCTATAGGTTCATACAGAGCAGGACGCATACAGCGGCCCTGGAAATCATCTGAGAACTGTAGTGATGATGATGACATTGATGTCTGCCCAAGGGAGAAGGGTAAGCAACAAGGTGATGATGAAAATATCGTGAACATTGATTGTAAGGAGGATACCGTTGGAGGGTGTAATGGTAGAAAGAAGATGAGCACTATGGCTGTTTCAAAGAGTCCTCTTCTTGAAAGAGATGTCAATGCTGCAGTATTAGATGGAAGCCAGAGCTTGTACCCATATCTTGTGGTAAACATTGGATCAGGTGTTAGCATTCTAAGAGTTGATTCTCCTGATCAGTTTCAGCGTGTTGGTGGAACAAGCCTTGGTGGAAGCACGTTTTTGGGGCTTGTATCAGCATTGACAGGATGTAACAGCTTTGAGGAAGCCCTTAATCTTGCTACACGAGGAGACTCAACACAGATCGATATGCTAGTTGGGGATATTTATGGTGGTGATTATACAGAGATGGGTCTAGCAGCAACCACAGTGGCCAGCTCATTTGGGAAGCTTGTCGAACCAAGGAAAAGGGATGCCGCAATGCAGACACCAGAGCATCTAGCAAAAGCAGTATTGCTAATGATTACAAATAACATTGGCTCAATTGCCATGTTGCATGCTCGTGCAGCGGGAGTTCATCATGTTTTGTTTACAGGCAGTTTTCTGCATGGTAATAAGGTAGCTATGAGGCTTTTAACAGTTGCCATGGAGTTTTGGTCCAAAAGCCTGATTAAGGCAATATTCCTACGACATGAAGGACATGCTGGAGCAGTTGGGGCAATGCTACATGATTTAGATCCAACCTCAACGGAGGATGCTTTTTTATTAATATAGCCCGAGGCATGAAGTATCTATATATGTAATGAAACAGGACCAGTAAGCTAAGTTATTGTAATAAAAAAGCAATTTGATTGCTTTTGAAATTATATACAAGTGCTCACAGGCATCCCTTCATCCCTTCTGTAATATATTTTGGGTCAGTGCTTCTTATTTTATGTATATATTGAGATTTCTCCTTATGCACAGATAGGCATAAGATTAGTAGCAGTACAGGTTTAACATATGGTGAATGATGAACCTTGGTATGTCTAAAGCCAAATTAAATGGGCTTCTAGTCCTATATGATTCATCATATTG

Ace file of the UniGene sp_v1.1_unigene8018

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pantothenate kinase PanK, putative (EC:2.7.1.33); K09680 type II pantothenate kinase [EC:2.7.1.33]	-	-	4.2039e-45	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	pantothenate kinase 2 (hallervorden-spatz syndrome)	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pantothenate kinase.	EC:2.7.1.33	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pantothenate and CoA biosynthesis	00770		0.0	71%
Blast2go	Metabolic pathways	01100		0.0	71%

Source	ECs	Term	Type	e value	Identity
AutoFact	Pantothenate kinase.	EC:2.7.1.33	-	4.2039e-45	54%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Pantothenate and CoA biosynthesis	00770		4.2039e-45	54%
AutoFact	Metabolic pathways	01100		4.2039e-45	54%

Source	GOs	Term	Type	Identity
Blast2go	pantothenate kinase activity	GO:0004594	Molecular Function	71%
Blast2go	cytosol	GO:0005829	Cellular Component	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pantothenate kinase, bacterial	IPR011602	-	0.0	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ15

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 363 aas, your sequence is shorter than subject: 611 - 895

Fln protein: MSNSRASQLQPLSVPKSEFTCYKTPKTWFTSPVSVETSPLKLESPIDFEILERASPSARFGMDIGGTLCKVVYFEPARELFSPGVNFGQSRNDTKSVKLCENDTTKMDKGRGRVSAFGKPSEDMDSEPPSDKGEKSHKEIGACGAQPAARIETQTDRSFEMNPDSSKSQEPLQNSEFTDSNMLDGRHGKPSPGCIDFNSIKTSFYALTEELTNEGTHSANCPVRNVRKIWLSSHAPIVLPGRGTLHFKCFETWRMEEFLRLTREHSLVCQDRAIGATGGGACKFLARFSEIAGLRLEHNDELKSLVRGIDFLVKIAQHESFEYPIGSYRAGRIQRPWKSSENCSDDDDIDVCPREKGKQQGDDENIVNIDCKEDTVGGCNGRKKMSTMAVSKSPLLERDVNAAVLDGSQSLYPYLVVNIGSGVSILRVDSPDQFQRVGGTSLGGSTFLGLVSALTGCNSFEEALNLATRGDSTQIDMLVGDIYGGDYTEMGLAATTVASSFGKLVEPRKRDAAMQTPEHLAKAVLLMITNNIGSIAMLHARAAGVHHVLFTGSFLHGNKVAMRLLTVAMEFWSKSLIKAIFLRHEGHAGAVGAMLHDLDPTSTEDAFLLI*

Protein Length: 612

Fln nts: AGGGGGTTTGTATTTCGTAATTTGTTTAGGTTTAAAATACCCGGTTGGGTTGTAGCCATGAAAGACCTTTGTGTAGTTAAAACGTTCAATTACTGTCGCAGACCTAACCTGTTAACTAAACCTCACTGGTCAAAATCCCAACCGTCGTGACCTTGGCTGTCACTTAGTTTTAACCGGGGTTTTCTTCTAGTTAATCGCTTGCTTGAGTCTGCCAACATGAGAATTGTGGTTGATTTTTGGGATGAGTAGTTGTTGACTCATGATTTTGGAGTCAATTTTCAAACTGGGTTGGGTCAAATTTGGTTTATCTTGTGATTTTTGTTCGATGGAGGGATCTAATTGGCTTCTGATGTCTGAGACTAATTTAGCAGATGTATATGTCCTCGGTGCATCTGCAAATCTTAGTCTGGCCAAAATTTCATCAATTAGGAGAGTCAGATTACCAACCAATTTCTTCAGTGTATATAATCTTGCTTTGTCTCGCTGAGTCCTGGAGCCATGAATCTAATTGCCTCCCATTTGGTCGATCATGTCATTTCTATTGATTTTGAAAACATAATTGTCTTGTTGGACAAGGTGTCAAGATAGTTTACAAAAGATCTAATTTAAAGGTTCGCTCTTCTGATTCTCCATTGACAAG_-_ATGAGCAACTCAAGAGCAAGTCAGCTCCAGCCATTGTCAGTCCCCAAATCCGAGTTTACGTGTTACAAGACCCCAAAGACTTGGTTCACAAGTCCTGTTTCTGTTGAAACAAGTCCGTTGAAACTGGAAAGCCCCATTGATTTTGAGATATTGGAGAGAGCATCTCCTTCAGCACGGTTTGGCATGGATATAGGTGGCACACTCTGCAAAGTTGTCTACTTTGAGCCAGCTAGAGAATTGTTCTCTCCAGGTGTGAATTTTGGCCAGAGTAGGAATGATACCAAATCTGTGAAACTCTGTGAAAATGATACAACAAAAATGGACAAAGGCAGAGGAAGGGTTAGTGCATTTGGTAAACCATCTGAAGATATGGATTCAGAGCCACCTTCAGATAAAGGAGAAAAATCCCATAAGGAGATCGGTGCTTGTGGTGCGCAACCTGCTGCCAGAATTGAGACACAGACTGATCGCTCTTTCGAAATGAACCCTGATTCGAGCAAATCACAGGAGCCGCTGCAGAATTCAGAATTTACAGATTCTAATATGCTGGATGGAAGACATGGAAAACCCTCGCCAGGATGTATTGATTTTAATAGTATTAAAACTTCTTTTTATGCACTTACAGAAGAACTGACAAATGAAGGAACACATTCTGCTAACTGTCCAGTAAGGAACGTCCGCAAAATATGGCTATCCAGTCATGCTCCTATTGTTCTGCCAGGTCGTGGAACACTTCATTTCAAATGTTTTGAGACTTGGAGAATGGAGGAATTTTTGAGACTCACAAGGGAACACTCTCTTGTTTGTCAGGATAGAGCCATTGGAGCAACTGGTGGCGGAGCTTGCAAATTTCTTGCCCGGTTTTCTGAAATTGCTGGCTTGCGGCTGGAGCACAATGATGAATTGAAGAGCTTGGTGCGAGGGATTGATTTTTTGGTCAAGATTGCTCAACATGAAAGCTTTGAGTATCCTATAGGTTCATACAGAGCAGGACGCATACAGCGGCCCTGGAAATCATCTGAGAACTGTAGTGATGATGATGACATTGATGTCTGCCCAAGGGAGAAGGGTAAGCAACAAGGTGATGATGAAAATATCGTGAACATTGATTGTAAGGAGGATACCGTTGGAGGGTGTAATGGTAGAAAGAAGATGAGCACTATGGCTGTTTCAAAGAGTCCTCTTCTTGAAAGAGATGTCAATGCTGCAGTATTAGATGGAAGCCAGAGCTTGTACCCATATCTTGTGGTAAACATTGGATCAGGTGTTAGCATTCTAAGAGTTGATTCTCCTGATCAGTTTCAGCGTGTTGGTGGAACAAGCCTTGGTGGAAGCACGTTTTTGGGGCTTGTATCAGCATTGACAGGATGTAACAGCTTTGAGGAAGCCCTTAATCTTGCTACACGAGGAGACTCAACACAGATCGATATGCTAGTTGGGGATATTTATGGTGGTGATTATACAGAGATGGGTCTAGCAGCAACCACAGTGGCCAGCTCATTTGGGAAGCTTGTCGAACCAAGGAAAAGGGATGCCGCAATGCAGACACCAGAGCATCTAGCAAAAGCAGTATTGCTAATGATTACAAATAACATTGGCTCAATTGCCATGTTGCATGCTCGTGCAGCGGGAGTTCATCATGTTTTGTTTACAGGCAGTTTTCTGCATGGTAATAAGGTAGCTATGAGGCTTTTAACAGTTGCCATGGAGTTTTGGTCCAAAAGCCTGATTAAGGCAATATTCCTACGACATGAAGGACATGCTGGAGCAGTTGGGGCAATGCTACATGATTTAGATCCAACCTCAACGGAGGATGCTTTTTTATTAATATAGCCCGAGGCATGAAGTATCTATATATGTAATGAAACAGGACCAGTAAGCTAAGTTATTGTAATAAAAAAGCAATTTGATTGCTTTTGAAATTATATACAAGTGCTCACAGGCATCCCTTCATCCCTTCTGTAATATATTTTGGGTCAGTGCTTCTTATTTTATGTATATATTGAGATTTCTCCTTATGCACAGATAGGCATAAGATTAGTAGCAGTACAGGTTTAACATATGGTGAATGATGAACCTTGGTATGTCTAAAGCCAAATTAAATGGGCTTCTAGTCCTATATGATTCATCATATTG

Fln Alignment:

sp_v1.1_unigene8018___GTLHFKCFETWRMEEFL------RLTREHSLVCQD--------RAIGATGGGACKFLARFSEIAGLRLEHNDELKSLVRGIDFLVKIAQHESFEY
C0PQ15______________GRLHFVKFETSKLSDCLDFIHSKNFHRGQNLNAWDCGESDTRNTIIKATGGGAYKFADVFKEKLGVTLDKEDEMDCLVAGANFLLKAIRHEAFTH

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
236		25		75	0.996473
237			25	75	0.996473
239		25		75	0.996473
241			75	25	0.996473
245		25	75		0.996473
246	75	25			0.996473
247			80	20	0.995493
249	80		20		0.995493
251		20		80	0.995493
256		20	80		0.995493
325		12		87	0.992554
331		12	87		0.992554
332	12		87		0.992554
333	87	12			0.992554
334			87	12	0.992554
335		12	87		0.992554
336	12		87		0.992554
577		83	16		0.994512
578	80		20		0.995493
579	80		20		0.995493
620	25		75		0.996473
642	90	10			0.90298
689		90		10	0.90298
705		12		87	0.992554
822	14			85	0.993533
825		14	85		0.993533
832	85			14	0.993533
833			14	85	0.993533
835		14		85	0.993533
839		14		85	0.993533
840		14	85		0.993533
841	14		85		0.993533
843	85			14	0.993533
844		85	14		0.993533
846		85	14		0.993533
847	12			87	0.992554
888		12		87	0.992554
1309	12		87		0.992554
2076		66	33		0.997452
2116			83	16	0.994512
2204	90		10		0.90298
2280	13		86		0.999973
2287		86	13		0.999973
2291	86		13		0.999973
2347	84		15		0.999986
2357		11		88	0.999937
2358	11		88		0.999937
2373	91			8	0.999807
2374	82	4	13		1.0
2395		91		8	0.999807
2444		9		90	0.999872
2468		89		10	0.999919
2469		15		84	0.999986
2603		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1672	1683	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain