SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7982

Length: 1571 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7982

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast sedoheptulose-1,7-bisphosphatase n=1 Tax=Solanum lycopersicum RepID=C5IU71_SOLLC	-	-	80%
FL-Next	sp=Sedoheptulose-1,7-bisphosphatase, chloroplastic; Triticum aestivum (Wheat).	-	-	77%
Blast2go	sedoheptulose- -bisphosphatase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sedoheptulose-bisphosphatase.	EC:3.1.3.37	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Carbon fixation in photosynthetic organisms	00710		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	87%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	87%
Blast2go	starch biosynthetic process	GO:0019252	Biological Process	87%
Blast2go	sedoheptulose-bisphosphatase activity	GO:0050278	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	thylakoid	GO:0009579	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase	IPR000146	-	87%
Blast2go	Fructose-1,6-bisphosphatase, active site	IPR020548	-	87%
Blast2go	Sedoheptulose-1,7-bisphosphatase	IPR023079	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P46285

Fln msg:

Fln protein: MESSMVAYSCSSTPLSRGSEPQLMSRPSLAASPARIPSITSRSAKASSIYGESLRTWPKSVARRMVSARNPSRNGSTLVTKCELGDSLEEFLAKSTNNKNLSRLLVCMGEAIRTIAFKVRTASCGATSCINTFGDEQLAVDLIANKLLFESLRYSHFCKYACSEENPEPEDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMGIYGPRTTYVLALKDAPGTHEFLLMDDGKWQHVKDTTEIGEGKLFSPGNLRATFDNPEYEKLINYYVSEKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGMLVEKAGGYSSDGKQSVLEKVISFVDERTQVAYGSKNEIIRFEETLYGSSRLNVPVGATVKA*

Protein Length: 404

Fln nts: GGTATTCCATGCCACGTGGGTGAAGATGAGACCGAAGAGAGAACATCCGCTGATCCCCTCCTGCTGCTACCAGCCCAATAACAATAACCACCACACAGAGCAGATGGGATACAAGCAAAAGGAAAACATTAACAGAAGCAATCAATCAATCGATCCATATTTGCTGCAGTAACAACA_-_ATGGAGAGTAGCATGGTGGCATACTCGTGCAGCAGCACACCACTCTCGCGAGGCTCGGAACCTCAGCTTATGTCCAGGCCATCTCTTGCTGCTTCACCTGCTCGAATCCCTTCCATAACCTCCCGGAGTGCCAAAGCAAGTTCTATCTATGGTGAGTCACTGCGCACATGGCCGAAATCTGTTGCAAGAAGAATGGTCTCAGCCAGAAATCCCAGCAGAAATGGTTCCACTCTAGTTACAAAATGTGAGCTAGGGGATTCTCTGGAGGAATTCCTGGCCAAGTCAACAAACAACAAGAATCTATCAAGGCTTTTGGTGTGCATGGGGGAAGCAATTAGAACCATAGCCTTCAAAGTCAGGACAGCGTCTTGTGGTGCCACATCCTGCATAAATACCTTTGGTGACGAGCAGCTGGCTGTTGATCTTATTGCCAATAAGCTGCTCTTTGAGTCTTTGAGATACTCCCATTTTTGTAAATATGCATGCTCCGAAGAGAACCCAGAGCCCGAGGACATGGGTGGACCTGTGGAAGGCGGGTTCAGTGTGGCCTTTGATCCTCTTGATGGGTCAAGCATTGTTGATACCAACTTCACAGTTGGTACAATATTTGGAGTGTGGCCTGGAGACAAATTAACAGGAGTGACTGGCAGAGATCAGGTTGCTGCTGCCATGGGCATTTATGGGCCTCGGACAACATATGTGCTTGCCCTCAAAGATGCACCAGGCACTCATGAATTCTTGTTAATGGATGATGGCAAGTGGCAACATGTTAAGGATACTACCGAGATAGGAGAGGGGAAACTCTTCTCTCCTGGGAATTTGAGGGCAACTTTTGACAACCCTGAATATGAGAAGCTGATCAACTACTATGTGAGTGAGAAGTACACACTCCGATACACAGGAGGCATGGTGCCAGATGTTAACCAGATTATAGTGAAGGAGAAGGGAATTTTCACAAATGTTACATCGCCAACCGCAAAGGCGAAGCTAAGATTGCTTTTCGAGGTGGCCCCTCTGGGAATGCTGGTTGAGAAAGCGGGCGGGTACAGCAGCGATGGAAAACAATCAGTTTTAGAGAAGGTTATTAGCTTCGTGGATGAGAGAACACAGGTTGCATATGGTTCCAAGAATGAAATCATTAGGTTCGAAGAAACCCTCTATGGATCTTCCAGGCTTAATGTGCCAGTTGGAGCAACAGTCAAGGCCTGA___TACGCGCTATATTCTCTCACCATTTTTTTGGGCTCATCTACTCCTCCGGATATCAATAGAAAATCATTCCCACAAGTCTGCCGAACCTTCGTTTTTTCTGGAAGTAACTGTGTATGTGTTTATAATTTTGGTATATATATTCGTCAGACATAAAAAAAAATAAGTTTCAGTATTCTAAATTTTTT

Fln Alignment:

sp_v1.1_unigene7982___PSLAASPARIPSITSRSAK-ASSIYGESLRTWPKSVARRMVSARNPSRNGS--TLVTKCELGDSLEEFLAKSTNNKNLSRLLVCMGEAIRTIAFKVRTASCGATSCINTFGDEQLAVDLIANKLLFESLRYSHFCKYACSEENPEPEDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGRDQVAAAMGIYGPRTTYVLALKDAPGTHEFLLMDDGKWQHVKDTTEIGEGKLFSPGNLRATFDNPEYEKLINYYVSEKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGMLVEKAGGYSSDGKQSVLEKVISFVDERTQVAYGSKNEIIRFEETLYGSSRL--NVPVGAT
P46285______________PACCAAMSFSQSYRPKAARPATSFYGESLRA---NTARTSFPAGRQSKAASRAALTTRCAIGDSLEEFLTKATPDKNLIRLLICMGEAMRTIAFKVRTASCGGTACVNSFGDEQLAVDMLADKLLFEALEYSHVCKYACSEEVPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLTGVTGGDQVAAAMGIYGPRTTFVVALKDCPGTHEFLLLDEGKWQHVKDTTSIGEGKMFSPGNLRATFDNPDYDKLVNYYVKEKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGFLIEKAGGHSSDGKQSVLDKVISVLDERTQVAYGSKNEIIRFEETLYGSSRLAASATVGAT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1423		72		27	1.0
1478		88		11	0.923564
1479		11	88		0.923564
1534	57		42		1.0
1541	40			60	1.0
1542	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
139	151	CAAT CAAT CAAT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain