SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7970

Length: 1633 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7970

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase, transferring glycosyl groups, putative	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	glycosyltransferase-like protein	-	-	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSX8

Fln msg: your sequence is shorter than subject: 420 - 513

Fln protein: QIQSRLRQSQQYTLYNIVFGIASSARKWNQRKQYIDLWWKLDVMRGFVWLDQEMAEPQSASLPQLKISEDTSRFRYTFKKGLRSAIRISRIVSETFRLNLSDVHWFVMGDDDTVFFPENLLHVLSKYDHSQYYYIGTNSESVEQNVLHSYGMAFGGGGFAISYPLAKALEKMQDSCLDRYSYLFGSDARIHACLADLGVPLTKEPGFHQVDFRGNLLGWLSAHPLTPLVSLHHLDAMTPIFPNMNQTQAFGHLFEAVKVDSSRILQQTICYDRVRQGSLSVSWGYSVHIFDSLQFPRELESPQQTFMHWRKTMTDQFMFNTRNVSRNPCLRPAVLFLESVSTGSKGITTTYTRQTGASCQLGKSALQALQQIRVLSPKSQLNWKQSPRRHCCDVLPSSVNNNLEIVMRSCLDGEVIYPQ*

Protein Length: 421

Fln nts: CAGATACAATCTCGTCTGAGACAATCCCAGCAATACACCCTTTATAACATTGTGTTTGGAATAGCGTCGTCTGCTAGAAAATGGAACCAGAGAAAACAGTACATTGATCTATGGTGGAAACTTGATGTTATGAGGGGATTTGTGTGGTTAGACCAAGAGATGGCTGAACCCCAGTCGGCTTCTCTGCCCCAGTTGAAGATCTCAGAGGATACTTCTAGGTTTAGGTATACTTTTAAGAAGGGATTGCGTTCAGCAATCAGGATTTCAAGGATTGTTTCGGAGACATTCAGGCTCAATCTCTCAGATGTACATTGGTTTGTCATGGGTGATGACGATACGGTTTTCTTCCCCGAAAATTTGTTGCATGTGCTGTCCAAGTATGACCATAGTCAGTACTACTATATTGGAACCAATTCAGAGAGTGTTGAACAGAATGTGCTGCATTCTTATGGCATGGCTTTTGGAGGCGGGGGCTTTGCTATTAGCTACCCACTTGCTAAGGCTCTGGAAAAGATGCAGGATAGCTGCTTGGATCGGTACTCGTATCTTTTTGGCAGTGATGCAAGAATACATGCTTGCTTGGCAGACCTTGGAGTCCCTTTAACCAAGGAACCAGGATTTCATCAGGTTGATTTTCGTGGAAACTTGTTAGGCTGGTTGTCTGCTCACCCACTGACACCCTTGGTATCACTTCATCATTTAGATGCAATGACACCCATATTCCCTAATATGAATCAAACACAGGCCTTTGGACATCTCTTTGAAGCAGTGAAGGTTGATTCTAGTAGGATTCTTCAACAGACTATCTGTTATGATAGAGTGCGGCAGGGGTCATTGTCTGTGTCATGGGGCTACAGTGTACATATTTTTGATAGCCTCCAATTCCCGCGTGAACTCGAATCTCCTCAGCAGACCTTCATGCATTGGAGAAAAACTATGACAGATCAGTTTATGTTCAACACTCGTAATGTTTCGAGGAATCCTTGCCTGAGGCCTGCTGTCTTATTTTTGGAAAGTGTTAGCACTGGATCTAAGGGAATCACCACTACCTATACAAGACAAACTGGGGCTAGTTGCCAATTGGGTAAAAGTGCGTTGCAGGCTCTGCAACAGATCAGAGTTCTATCACCGAAGTCACAACTGAACTGGAAGCAATCTCCGAGGAGACATTGTTGTGATGTTCTACCATCTTCCGTGAACAACAACCTGGAGATTGTGATGAGAAGCTGTTTGGATGGGGAAGTCATATATCCACAGTGA___AAAAGAAGATTGTAATCTTTTTGGGTGAACCAAACCCTACTTTGTTGATGTATTATATGGACTGTTCTTGATTATCGAGACATGGCTTCCTCTGTGGGAGAAGAAAAAAAGTTGAGCAACATTGCATCTCTTCGGTGGTCAAAAGCCTTAATGAAAATGAATGATGTTCATTTCATCTGAAAAAATGTTTTAGCTCCTCTTATCAAGTGTTAAGGCATGACACTTTGATTCTTTAGTTGAGTTAGCACTTACAGGTTTCAGAATAAATAATTATTGTATTGATTCTAAAGCATTAATCTCTATCTGGCTTTTGTTATTGCAAGACATGTTTTAACAGTACGAAATAGCTATATGACCTAGACAAGATATATGT

Fln Alignment:

sp_v1.1_unigene7970___TLYNIVFGIASSARKWNQRKQYIDLWWKLDVMRGFVWLDQEMAEPQSASLPQLKISEDTSRFRYTFKKGLRSAIRISRIVSETFRLNLSDVHWFVMGDDDTVFFPENLLHVLSKYDHSQYYYIGTNSESVEQNVLHSYGMAFGGGGFAISYPLAKALEKMQDSCLDRYSYLFGSDARIHACLADLGVPLTKEPGFHQVDFRGNLLGWLSAHPLTPLVSLHHLDAMTPIFPNMNQTQAFGHLFEAVKVDSSRILQQTICYDRVRQGSLSVSWGYSVHIFDSLQFPRELESPQQTFMHWRKTMTDQFMFNTRNVSRNPCLRPAVLFLESVSTGSKGITTTYTRQTGASCQLGKSALQALQQIRVLSPKSQLNWKQSPRRHCCDVLPSSVNNNLEIVMRSCLDGEVIYPQ
C0PSX8______________TLYNIVFGIASSARKWNQRKRYVDLWWKPGVMRGFVWLDQEIGEPQSASLPQLKVSEDTSRFRYTFKKGLRSAIRISRIVSETFRLNLSDVHWFVMGDDDTVFFPENLLQVLSKYDHNQYYYIGTNSESVEQNVLHSYGMAYGGGGFAISYPLAKALEKMQDSCLDRYSYLYGSDARIHACLADLGVPLTKEPGFHQVDFRGNLLGWLSAHPLAPLVSLHHLDAMAPIFPKMNQTQAFEHLFEAVKVDSSRILQQTICYDKVRQGSLSVSWGYSVHVFDSIQFPRELESPQQTFMHWRKTMTDQFMFNTRNVSRNPCLRPAVLFLESVSTGSKGITTTYTRQTGASCQLGKSALQALQQIRVLSPKSQLNWKQSPRRHCCDVLPSSLNNSLEILMRSCLDGEVIYPQ

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
544	88		11		0.923564
635	20			80	0.995493
636	20		80		0.995493
638	20			80	0.995493
639		20		80	0.995493
640		20		80	0.995493
646			80	20	0.995493
647	80	20			0.995493
648	80	20			0.995493
649	80			20	0.995493
650		80		20	0.995493
653		20	80		0.995493
656	80			20	0.995493
657	20		80		0.995493
658	20		80		0.995493
661			80	20	0.995493
662	20		80		0.995493
663		20		80	0.995493
665	20		80		0.995493
667	20	80			0.995493
668	20			80	0.995493
669	20		80		0.995493
670	20	80			0.995493
674		75	25		0.996473
675		75		25	0.996473
713	83		16		0.994512
886	66		33		0.997452
1375	45	54			1.0
1401		10		90	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain