SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7958

Length: 1968 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7958
CCAAAGAATATGTCTTCATCTACATTGGATCTGGTCTCTATGCTGTTGTTGCCTACCTTTGTCAGCACTACTTTTTCACTATCATGGGCGAGAATCTCACTGCAAGAGTCCGGGAGATGATGCTTTCAGCTATACTCCGCAATGAAGTAAGCTGGTTTGATGAGGAGGAGAATAACTCAAGCCAGATAGCTTCTCATTTGGCAGCTGATGCAACAAATGTCAAATCTGCAATCGCGGAAAGAATCTCAGTTATTTTACAGAACATGACTTCATTGTTAACTTCCTTTATTATAGCTTTCATTGTGGAATGGCGAATGGCTCTGCTAATTCTGGCAACATTCCCTCTTCTTGTCTTTGCAAATTTTGTGCAGCAACTGTCTCTCAAAGGATTTGCAGGAGACACAGCAAAAGCGCATGCAAGGGCAAGCATGGTGGCAGGTGAAGCAGTTAGCAACATACGAACTGTAGCCGCCTTCAATGCAGAGGACAAAGTCCTCAATCTCTTTGACCAAGAGCTGAAGTTACCTCAAACCCAAAGCCTGAAACGTGGCCAGTTCTCTGGCTTTCTATTTGGAATCTCACAGCTCTCACTATATGGATCTCAAGGCTTAATACTGTGGTATGGTGCAAGACTAGTTCAAAATGGAACCTCAACATTCTCCAAAGTGATCAAAGTCTTTGTAGTTCTTGTAATCACAGCAAATTCTGTTGCTGAAACACTAAGCCTTGCACCAGATTTCATCAAAGGTGGAGAAGCAGTAAGTTCTATTTTTGCAATTCTTGACCGTGGAACAAAAATTGAACCAGATGATGAAGATGCAGAAATTGCTGATAAAATCAAAGGTGAAATTGAATTAAAGCATATAGAATTTGCTTATCCATCCAGGCCTGAAGTCACCATTTTCAAAGATTTGAACCTAAAAATTAAAGCCTGTCATAGCCAAGCCTTGGTTGGGGCAAGTGGTTCAGGCAAAAGCTCAGTGATCGCATTGATTGAAAGATTTTATGATCCTGTAGCAGGTAAGGTTACAATAGATGGTAAAGACATCAAGAAATTGAATCTGAAGTCCTTACGTTTGAAAATTGGGCTTGTACAGCAAGAGCCTGCACTTTTTGCTACCACAATATATGAAAATATACTTTATGGTAAAGAAAATGCAACTGAGACTGAAATCATTGAGGCTGCCAAGGCAGCAAATGCACATAACTTTATAAGTAGCTTGCCTGATGCTTACCAAACCATGGTTGGTGAAAGAGGTGTTCAGTTATCTGGAGGCCAGAAGCAGAGAATTGCCATAGCAAGGGCCGTCTTGAAGAATCCCAGCTTGCTTTTATTAGATGAAGCTACTAGTGCACTAGATGCAGAATCAGAGATTATTGTTCAAGAAGCTTTGGAGAGATTGATGTGTGGAAGGACAACAGTCATAGTTGCTCATCGTTTGTCAACAATTCGAAATGTGGACTCCATTGCTGTCATTCAAGATGGTAGAATTGTTGAACAAGGTAGTCATCAGGAACTTTCTTCTAGAAGTGACGGACCATATGCCCGCCTTCTGAATCTTCAACGCCACCATACCTAACCTTAACATGTGCTTTTTTGGGTTTTTGTTTTTCTTTCATTTATGTAGATACAGAGATGATGAATCCATCTGCATCATCATATTGTATTCCATTAACTTTGAATGCATTGTATGTTCATGGAAAATATTGGTATAAACTGGGTTGGGGTTTTACATTTTTCTTCCCAACTCTATATTAGACAGCTGCTTTAGGCAGAAATCTAGCCTAAGCCACACTCAGATAAATTCAGAAAATGTATAAAGTAGCCTTCTTTAAGCTATGTTTCCCACTATGTTCATGGTGATTCTGAAGGCCATCCACAAGTTGGCAAATGTGTGGATCATCGCTTTCAGTGCATATGAATATGTGAATGTTTGATTGGTTTTAATTATGTCCGTTTAATATTTT

Ace file of the UniGene sp_v1.1_unigene7958

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug/pheromone exporter, MDR family, ABC transporter family n=5 Tax=core eudicotyledons RepID=B9IJV9_POPTR	-	-	74%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	42%
Blast2go	multidrug resistance protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Thiamine metabolism	00730	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	88%
Blast2go	positive gravitropism	GO:0009958	Biological Process	88%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	88%
Blast2go	response to blue light	GO:0009637	Biological Process	88%
Blast2go	acropetal auxin transport	GO:0010541	Biological Process	88%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	88%
Blast2go	regulation of cell size	GO:0008361	Biological Process	88%
Blast2go	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	88%
Blast2go	stamen development	GO:0048443	Biological Process	88%
Blast2go	lateral root development	GO:0048527	Biological Process	88%
Blast2go	response to far red light	GO:0010218	Biological Process	88%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	88%
Blast2go	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	88%
Blast2go	ABC transporter-like	IPR003439	-	88%
Blast2go	AAA+ ATPase domain	IPR003593	-	88%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	88%
Blast2go	ABC transporter, conserved site	IPR017871	-	88%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 526 - 1316

Fln protein: KEYVFIYIGSGLYAVVAYLCQHYFFTIMGENLTARVREMMLSAILRNEVSWFDEEENNSSQIASHLAADATNVKSAIAERISVILQNMTSLLTSFIIAFIVEWRMALLILATFPLLVFANFVQQLSLKGFAGDTAKAHARASMVAGEAVSNIRTVAAFNAEDKVLNLFDQELKLPQTQSLKRGQFSGFLFGISQLSLYGSQGLILWYGARLVQNGTSTFSKVIKVFVVLVITANSVAETLSLAPDFIKGGEAVSSIFAILDRGTKIEPDDEDAEIADKIKGEIELKHIEFAYPSRPEVTIFKDLNLKIKACHSQALVGASGSGKSSVIALIERFYDPVAGKVTIDGKDIKKLNLKSLRLKIGLVQQEPALFATTIYENILYGKENATETEIIEAAKAANAHNFISSLPDAYQTMVGERGVQLSGGQKQRIAIARAVLKNPSLLLLDEATSALDAESEIIVQEALERLMCGRTTVIVAHRLSTIRNVDSIAVIQDGRIVEQGSHQELSSRSDGPYARLLNLQRHHT*

Protein Length: 527

Fln nts: CCAAAGAATATGTCTTCATCTACATTGGATCTGGTCTCTATGCTGTTGTTGCCTACCTTTGTCAGCACTACTTTTTCACTATCATGGGCGAGAATCTCACTGCAAGAGTCCGGGAGATGATGCTTTCAGCTATACTCCGCAATGAAGTAAGCTGGTTTGATGAGGAGGAGAATAACTCAAGCCAGATAGCTTCTCATTTGGCAGCTGATGCAACAAATGTCAAATCTGCAATCGCGGAAAGAATCTCAGTTATTTTACAGAACATGACTTCATTGTTAACTTCCTTTATTATAGCTTTCATTGTGGAATGGCGAATGGCTCTGCTAATTCTGGCAACATTCCCTCTTCTTGTCTTTGCAAATTTTGTGCAGCAACTGTCTCTCAAAGGATTTGCAGGAGACACAGCAAAAGCGCATGCAAGGGCAAGCATGGTGGCAGGTGAAGCAGTTAGCAACATACGAACTGTAGCCGCCTTCAATGCAGAGGACAAAGTCCTCAATCTCTTTGACCAAGAGCTGAAGTTACCTCAAACCCAAAGCCTGAAACGTGGCCAGTTCTCTGGCTTTCTATTTGGAATCTCACAGCTCTCACTATATGGATCTCAAGGCTTAATACTGTGGTATGGTGCAAGACTAGTTCAAAATGGAACCTCAACATTCTCCAAAGTGATCAAAGTCTTTGTAGTTCTTGTAATCACAGCAAATTCTGTTGCTGAAACACTAAGCCTTGCACCAGATTTCATCAAAGGTGGAGAAGCAGTAAGTTCTATTTTTGCAATTCTTGACCGTGGAACAAAAATTGAACCAGATGATGAAGATGCAGAAATTGCTGATAAAATCAAAGGTGAAATTGAATTAAAGCATATAGAATTTGCTTATCCATCCAGGCCTGAAGTCACCATTTTCAAAGATTTGAACCTAAAAATTAAAGCCTGTCATAGCCAAGCCTTGGTTGGGGCAAGTGGTTCAGGCAAAAGCTCAGTGATCGCATTGATTGAAAGATTTTATGATCCTGTAGCAGGTAAGGTTACAATAGATGGTAAAGACATCAAGAAATTGAATCTGAAGTCCTTACGTTTGAAAATTGGGCTTGTACAGCAAGAGCCTGCACTTTTTGCTACCACAATATATGAAAATATACTTTATGGTAAAGAAAATGCAACTGAGACTGAAATCATTGAGGCTGCCAAGGCAGCAAATGCACATAACTTTATAAGTAGCTTGCCTGATGCTTACCAAACCATGGTTGGTGAAAGAGGTGTTCAGTTATCTGGAGGCCAGAAGCAGAGAATTGCCATAGCAAGGGCCGTCTTGAAGAATCCCAGCTTGCTTTTATTAGATGAAGCTACTAGTGCACTAGATGCAGAATCAGAGATTATTGTTCAAGAAGCTTTGGAGAGATTGATGTGTGGAAGGACAACAGTCATAGTTGCTCATCGTTTGTCAACAATTCGAAATGTGGACTCCATTGCTGTCATTCAAGATGGTAGAATTGTTGAACAAGGTAGTCATCAGGAACTTTCTTCTAGAAGTGACGGACCATATGCCCGCCTTCTGAATCTTCAACGCCACCATACCTAA___CCTTAACATGTGCTTTTTTGGGTTTTTGTTTTTCTTTCATTTATGTAGATACAGAGATGATGAATCCATCTGCATCATCATATTGTATTCCATTAACTTTGAATGCATTGTATGTTCATGGAAAATATTGGTATAAACTGGGTTGGGGTTTTACATTTTTCTTCCCAACTCTATATTAGACAGCTGCTTTAGGCAGAAATCTAGCCTAAGCCACACTCAGATAAATTCAGAAAATGTATAAAGTAGCCTTCTTTAAGCTATGTTTCCCACTATGTTCATGGTGATTCTGAAGGCCATCCACAAGTTGGCAAATGTGTGGATCATCGCTTTCAGTGCATATGAATATGTGAATGTTTGATTGGTTTTAATTATGTCCGTTTAATATTTT

Fln Alignment:

sp_v1.1_unigene7958___EYVFIYIGSGLYAVVAYLCQHYFFTIMGENLTARVREMMLSAILRNEVSWFDEEENNSSQIASHLAADATNVKSAIAERISVILQNMTSLLTSFIIAFIVEWRMALLILATFPLLVFANFVQQLSLKGFAGDTAKAHARASMVAGEAVSNIRTVAAFNAEDKVLNLFDQELKLPQTQSLKRGQFSGFLFGISQLSLYGSQGLILWYGARLVQNGTSTFSKVIKVFVVLVITANSVAETLSLAPDFIKGGEAVSSIFAILDRGTXXXXXXXXXXXXXXXXGEIELKHIEFAYPSRPEVTIFKDLNLKIKACHSQALVGASGSGKSSVIALIERFYDPVAGKVTIDGKDIKKLNLKSLRLKIGLVQQEPALFATTIYENILYGXXXXXXXXXXXXXXXXXXHNFISSLPDAYQTMVGERGVQLSGGQKQRIAIARAVLKNPSLLLLDEATSALDAESEIIVQEALERLMCGRTTVIVAHRLSTIRNVDSIAVIQDGRIVEQGSHQELSSRSDGPYARLLNLQ
E6Y0T0______________EFVYLACGAGVASLLQVSC----WMCTGERQATRIRSLYLKTILRQDIGFFDSEAS-TGEVIGRMSGDTILIQDAMGEKVGKFIQFITTFIAGFVIAFIKGWKLSLVMLSMIPLLVVSGGSMAMIISKMSSRGQQAYSEAANIVEQTIGSIRMVASFTGEKKSIEGYNKSLAIAYNAITQQGLVAGVGLGSVLFIMFCGYALALWYGSRLILDGSYTGGDVINVIFAVLMGGMSLGQTSPSLNAFSAGRAAAYKMFETIDRKPVIDVFDKSGLVLEDIQGDIELKDVRFTYPARPDVQVFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKFQLKWIRQKIGLVSQEPVLFGTTIKENLLYGKDGATLEEIKAAAELANAAKFINKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
23		66		33	0.997452
24	66		33		0.997452
25			33	66	0.997452
26			33	66	0.997452
453		90	10		0.90298
454	90		10		0.90298
540		90		10	0.90298
570	88			11	0.923564
791	12		87		0.992554
838	85			14	0.993533
839	14			85	0.993533
916	75			25	0.996473
917	75			25	0.996473
919	20	80			0.995493
1596		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain