SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7948

Length: 1309 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7948

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Atrophin-1 multi-domain protein	-	-	1.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	yth domain-containing	-	-	1.12104e-44	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	1.12104e-44	51%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A886

Fln msg: Distance to subject end: 374 aas, your sequence is shorter than subject: 320 - 667

Fln protein: MAAASAQAAERIHSVDTEATNLLQNLSLDPQAKPADVADATKQESPPPQYVVGEGANGSGDVAGTVPSTDRTSTPVLQDLVLDQNLFYLPNGYAPQAYYYGGYDGPVGEWDDYRYVNADGVEIPATGVYGDNGSVVYHPSFGYAPQVPYGPYSPAGTPVPTMGADGQLYGPQPFQYTGPFYQQPVPPGAQYVHPPTPPLPQGEVSTSTASDQAIVDSTNGNANNGNTNGVPLGPRPSYPIPLLPSNGGYGRGILPSNHDGIRTVAPWLDGPLVSDGQYRPPTSNPVSSVVSQTTSPGPLGQNMRPLPPVMPHMHGVPQNK

Protein Length: 321

Fln nts: TTTTTTTCCAATACGAAGCTCGGGGGCTCGCAGCCGACCTTGATTTTACTCTTCAATCTTGTACACGGCTTTGCAAGTCGGTAATATTTTTGATTGACACGCGGGTTTCTTCGACCGGAAAACGCTTTTACGGTTGTACGCGAAGGCGGTGAAGTCGGTTCCAGTTTTCTCTCTTCGGTGGTATGCAGGAATGACGTATAACGGGCTGCTGCTGTGAGTTTTATTTCGTAATTTTTGCGGCGGTCGATTCGGTATTTTCTGGCCAACGGTGTGCTCTTTCACAGGGTTATAGGTTTTAGTTTCTGGGTTTCGCCGTTTTTTTTCATCAGGCAGCTCAAGGAAGCACAG_-_ATGGCAGCCGCTTCGGCACAAGCAGCTGAACGTATCCACTCCGTCGATACTGAAGCCACCAATTTACTGCAAAATTTGTCTCTGGATCCCCAAGCGAAGCCTGCAGATGTTGCAGATGCAACAAAACAGGAGTCTCCGCCACCTCAGTATGTGGTTGGCGAAGGTGCCAACGGTAGTGGTGATGTAGCAGGGACTGTGCCTTCAACTGATAGGACCAGTACTCCTGTTCTACAAGACCTGGTCTTGGATCAAAATTTGTTTTATCTTCCAAATGGATATGCCCCCCAGGCTTATTATTATGGAGGTTACGATGGTCCTGTTGGTGAATGGGATGATTATCGATATGTCAATGCTGATGGAGTTGAGATTCCTGCTACCGGTGTGTATGGTGATAACGGTTCAGTTGTTTATCACCCTAGCTTTGGATATGCTCCCCAAGTGCCTTACGGCCCTTATTCTCCAGCTGGCACTCCAGTGCCAACTATGGGAGCTGATGGTCAGTTATATGGACCTCAGCCGTTCCAATATACTGGTCCTTTTTACCAGCAACCTGTACCTCCAGGTGCACAGTATGTTCATCCTCCGACTCCTCCCCTACCACAGGGGGAAGTGTCAACGTCCACGGCTTCCGACCAGGCAATAGTAGACAGCACAAATGGTAATGCTAATAATGGGAACACTAATGGTGTTCCCTTGGGTCCAAGACCTAGCTATCCAATACCTTTATTACCATCTAATGGTGGATATGGCAGGGGTATTTTGCCCTCAAACCATGATGGTATCAGGACTGTTGCTCCTTGGCTTGATGGGCCACTAGTTTCAGACGGTCAATATAGGCCTCCGACAAGTAATCCAGTGTCATCAGTGGTTTCACAGACTACATCTCCTGGTCCGCTTGGGCAAAATATGCGGCCATTACCTCCTGTAATGCCACACATGCATGGTGTACCACAAAACAAAA

Fln Alignment:

sp_v1.1_unigene7948___LLQNLSLDPQAK-PADVADAT-KQESPPPQYVVGEGANGSGDVAGTVPSTDRTSTPVLQDLVLDQNLFYLPNXXXXXXXXXXXXXXXVGEWDDYR-YVNADGVEIPATGVYGDNGSVVYH-PSFGYAPQVPYGPYSPAGTPVPTMGADGQLYGPQPFQYTGPFYQQPVPPGAQYVHPPTPPLPQGEVSTSTASDQAIVD
D5A886______________MMQNMKIEDAAQAPAMEASANIAKEAPGPE---GSPSDATSSVTSLGDSTSTKGSDLEQETVVENGLYYAPNNYYGFYYPGYEVPG--NDWDEHGGFIGMDGVEVPYTGMQAENGSLVYYMPGYGY-PQPAYNPYN-TYFPGAMLGADG-LLAHQPY-YPSPIYQQPLTSPA-YFPPPVAYGSEVPPAFSWESGLAVAD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
148		11	88		0.999952
225			10	90	0.90298
230	90		10		0.90298
232		11		88	0.923564
233		11		88	0.923564
236			11	88	0.923564
240			88	11	0.923564
242	11		88		0.923564
243		11	88		0.923564
247	88		11		0.923564
414			10	89	0.999919
415	89		10		0.999919
420	89			10	0.999919
421	89	10			0.999919
423	90	10			0.999898
425		10		90	0.999898
426	10			90	0.999898
918	90		10		0.90298
951	77	22			0.999999
990		41		58	1.0
992			75	25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain