SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7945

Length: 1296 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7945

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	choline/ethanolamine kinase, putative (EC:2.7.1.82); K14156 choline/ethanolamine kinase [EC:2.7.1.32 2.7.1.82]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	choline ethanolamine	-	-	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Choline kinase.	EC:2.7.1.32	-	0.0	55%

Source	KEGGs	Term	Type	Identity
AutoFact	Glycerophospholipid metabolism	00564		55%
AutoFact	Metabolic pathways	01100		55%
AutoFact	Ethanolamine kinase.	EC:2.7.1.82	-	55%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Glycerophospholipid metabolism	00564		0.0	55%
AutoFact	Metabolic pathways	01100		0.0	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Choline/ethanolamine kinase	IPR002573	-	0.0	75%
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLC2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 299 - 351

Fln protein: SYFQCSWQTRDGEKPRKVLVRIYGEAANTYFDREYEIRAFECISNLGQGPRLLGYFHNGRIEEFLNAKTLSAPDIRNPEISAKIAAKLWEFHQIEIPGSRQPMLWTRLREWVKTALALCPKDVAAEFQLDCMEEDINYLEKMIWREDQKVAFCHNDLQYGNIMMNEEDKKLIIIDYDCSTYNPVAYDIANHFCEMAGDYHSDTPHILDFNKYPDFEKRRTFVKEYLKASSGTGETVSEKEVEQFLKDIEKYTIASHIHWALWGIIAGRVNTIEFDYMEYARQKFQQYNLWKHSILNIE*

Protein Length: 300

Fln nts: CATTTTCAGGCCCTCTGTCTCTGAAGCTGCATTGCTTCTTCCGTAGTACTAGTCAATAAATCTTGATCCACTGTTGGATTTTGGAGCTTGAATTCAACTGACTCATCATCCCATGGCATCTGTGACTGAGTGCGTGAAATTAGCTGCAGATGCCGAGAGCGCTCTACAGGCTGTGGCTCTGAATTGGGAGGACATCATTGATGCAAAGCAGATGGAAGTCACCCGTCTCACGGGCGCCGCCGTCACTAATCATATTTTCAATGTAGCTGGCAGACCAGAGACGGAGAGAAGCCCAGGAAGGTCCTGGTTCGAATCTACGGAGAGGCCGCCAATACGTATTTTGATCGAGAATATGAGATTCGGGCATTTGAGTGCATTTCAAATCTTGGTCAGGGTCCGCGTCTCTTGGGTTACTTTCATAATGGCCGCATTGAGGAGTTTCTCAACGCAAAGACATTGTCTGCCCCTGATATAAGAAATCCCGAAATATCTGCAAAAATAGCGGCGAAATTGTGGGAATTTCATCAAATTGAGATACCAGGTTCTCGACAACCAATGCTGTGGACGCGACTCAGAGAGTGGGTAAAGACAGCATTGGCTCTGTGTCCTAAAGACGTGGCTGCAGAATTCCAGCTTGATTGTATGGAAGAGGATATCAATTATCTGGAGAAGATGATATGGAGGGAGGATCAGAAAGTTGCTTTTTGTCACAATGATTTGCAATATGGAAACATTATGATGAATGAGGAAGATAAGAAGTTGATTATAATTGATTATGATTGTTCAACTTATAATCCAGTGGCATATGATATAGCAAATCACTTTTGTGAGATGGCTGGTGATTATCATAGTGATACACCACATATATTAGACTTCAACAAATATCCAGATTTTGAAAAGCGTCGTACATTTGTGAAGGAATATTTAAAGGCATCGAGTGGCACAGGTGAAACTGTGAGTGAAAAAGAAGTTGAACAGTTTTTAAAAGATATCGAGAAATATACTATTGCAAGCCATATCCATTGGGCTCTATGGGGAATTATTGCGGGGCGTGTGAACACCATAGAATTTGATTATATGGAGTATGCTCGACAGAAGTTTCAACAATACAATTTATGGAAGCATTCAATATTAAATATTGAATAG___TCAACTTTGATCGAAGAAGTTATGATTATTTTAAATATTTAATAATTGGACATTGGTTCCATATTATGTATTGAATAATTAATTTGGATTATGAGAGAAGTTATGACTATTTCCGAGATTTATTAATATGATTATATTTTTCATTTAAAA

Fln Alignment:

sp_v1.1_unigene7945___FQCSWQTRDGEKPRKVLVRIYGEAANTYFDREYEIRAFECISNLGQGPRLLGYFHNGRIEEFLNAKTLSAPDIRNPEISAKIAAKLWEFHQIEIPGSRQPMLWTRLREWVKTALALCPKDVAAEFQLDCMEEDINYLEKMIWREDQKVAFCHNDLQYGNIMMNEEDKKLIIIDYDCSTYNPVAYDIANHFCEMAGDYHSDTPHILDFNKYPDFEKRRTFVKEYLKASSGTGETVSEKEVEQFLKDIEKYTIASHIHWALWGIIAGRVNTIEFDYMEYARQKFQQYNLWKHSILNI
B8LLC2______________YQCNWKTRKGEKPRKALVRIYGEGVDLFFNRENEIRTFECMSRLGQGPRLLGRFPEGRIEEFLNARTLSAPDLRCPEISAQIAAKLREFHQLDVPGPRKPKLWTRLRDWVKTALAVCPKIEAAEFQLDCMEEEVDNLEKLLSREDETIGFCHNDLQYGNIMLHEEDKSLTIIDYEYSSYNPVAYDIANHFCEMAANYHTDTPHILDYSKYPDFEERQRFVKEYLKSS---GEMESDR-VGQLLEDVEKYALASHLLWGLWGVISDHVNNIEFDYIDYARQRFQQYQLSKSLLLNV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
337		40	60		1.0
488	71	28			1.0
498	85		14		0.993533
500	85	14			0.993533
515		33		66	1.0
560		83	16		0.994512
850		18		81	0.999994
1004	75		25		1.0
1116		11		88	0.923564
1141			33	66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain