SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7944

Length: 1088 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7944

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	23S rRNA methyltransferase, putative	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	60%
Blast2go	protein	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	0.0	75%
Blast2go	tRNA (cytidine/uridine-2'-O-)-methyltransferase	IPR016914	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T2X8

Fln msg: your sequence is longer than subject: 305 - 250

Fln protein: MSSAIGSLPLTRDQTLRLSLCHFSPGFIRVRSFPLPLQNGFCNARCSSTLYHTKHWTSLALVRQSAPNDKGRCLLLHPFSRTHTSHRKTFKRILVTVSGSQLKPWTSTVGEAVRKSSNDRFLQVVLHSPQIPGNTGCVARTCAASAVGLHLIEPLGFQIDDTKLKRAGLDYWPYVVVKVHSSWSEFLDYFKQQEGQKRLLAFTKRGETVHTDMTYKPGDWLVFGSEPSGLPPEVLADCANEVYGGRTIRIPILETYVRCLNLSVCVGIAVYEASRQLGYEQFHDVSSDFIESEVNGKALTSTEL*

Protein Length: 306

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTTTTGAATATAGCCACCAAAATCTGGGATAAAACTGGTAGAGAGGTGCCTCCGTGCTCTGCTGGGGTGAAGGA_-_ATGTCGAGTGCAATTGGGTCATTGCCACTGACAAGGGACCAAACATTGAGATTGTCATTGTGCCATTTCTCACCCGGTTTTATACGTGTCCGGTCCTTTCCCCTTCCGCTGCAAAATGGCTTCTGCAATGCTAGATGTTCATCCACATTGTACCATACAAAACACTGGACTTCTCTCGCACTAGTTAGGCAATCGGCGCCGAACGACAAGGGCAGATGTCTTCTATTGCATCCATTCAGTAGAACACACACTTCACACAGGAAGACCTTCAAACGGATCCTTGTTACAGTTTCAGGAAGCCAATTAAAGCCTTGGACTTCAACGGTTGGGGAGGCTGTTAGGAAATCTTCAAACGATAGATTTCTTCAAGTAGTGTTGCATTCTCCACAGATTCCTGGTAATACGGGGTGTGTTGCTAGAACATGTGCAGCATCAGCAGTTGGTCTACATCTCATTGAGCCTCTAGGTTTCCAAATTGATGACACAAAATTGAAGCGTGCAGGTTTGGACTACTGGCCATATGTTGTTGTTAAGGTTCATAGTTCATGGAGTGAATTTCTTGACTACTTCAAGCAGCAGGAAGGTCAAAAACGACTTTTGGCATTTACCAAGAGAGGCGAGACTGTACATACGGATATGACCTACAAACCTGGGGATTGGCTCGTTTTTGGTTCAGAACCAAGTGGTCTGCCTCCAGAGGTTTTAGCTGACTGTGCAAATGAGGTATATGGTGGTCGAACCATTCGGATTCCTATACTGGAGACCTATGTCCGATGTCTGAATCTCTCAGTGTGTGTGGGTATTGCTGTTTACGAGGCTTCAAGACAACTTGGATATGAACAATTTCATGATGTATCTAGTGACTTTATAGAAAGTGAAGTCAATGGAAAGGCGTTAACATCCACTGAACTGTAA___ATACATCAGTTTATGATGGATGATTTATATGCAGAAGATTAATGTCTGTTGATTCTTTGAAATGTCGTCTTC

Fln Alignment:

sp_v1.1_unigene7944___TSLALVRQSAP-NDKGRCLLLHPFSRTHTSHRKTFKRILVTVSGSQLKPWTSTVGEAVRKSSNDRFLQVVLHSPQIPGNTGCVARTCAASAVGLHLIEPLGFQIDDTKLKRAGLDYWPYVVVKVHSSWSEFLDYFKQQEGQKRLLAFTKRGETVHTDMTYKPGDWLVFGSEPSGLPPEVLADCANEVYGGRTIRIPILETYVRCLNLSVCVGIAVYEASRQLGYEQFH-------DVSSDFIESEV
D7T2X8______________TSLKTLNAIAPFHFRTRVSLFRPFF-LHQVHRNRFYPICSLSKRGSDSSLPNGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDSSKSFLTEDI

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
60	66		33		0.997452
61	33		33	33	0.997753
62		33	66		1.0
63	33		33	33	0.997753
161	25			75	0.996473
254		25		75	0.996473
290	80		20		0.995493
727	40		60		1.0
768	16		83		0.994512
912		40		60	1.0
921		75		25	1.0
1006	80	20			0.995493
1007	80		20		0.995493
1010			20	80	0.995493
1011		80		20	0.995493
1012		80	20		0.995493
1014		80	20		0.995493
1020	20			80	0.995493
1022			20	80	0.995493
1023	80	20			0.995493
1024	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain