SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7931

Length: 2782 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7931
AAGAAAACGGCAATAGAGGTTTTACNCTGCAGAAATCTGGAAGCGCGAGTGATGGTATTCATTCACGAAACCTTCTGCTATTCTCTTCAGAAACGGGTCATCCACTGCTGCAGCGTCTGGACGGTCTCCATGAATGATGCAGAAGAAGCGAGTAACATTAGTTGACCGACTACTGCCTCCAATCTGCAGGCAATGCACAGAATCGCATGTTGAATAGCTGGATTTGCAAGAATTTCAAGCATGAATGTTGTGAGCATTGATAAGTTATTTGTGAGCAAGGTGGCAGCAGTAGCAATCACAGTTTAAGTTATATACGGTGTGCATGAATGAATTCCCGCCTGGCTGCTGACTGTACAACATCGTTATTAATAAGGAGTTTGGGTGGATTTAAGTGTCAGGCATTAGCATTGGACTCTTTTCTCTGGAAATCATGCGATTCAAAGTTGTGTTCTTCGTGGTCTGGAATCTATTGAAGTGGCTGTAAGAAAAGGTGCTTTGCAGTGAAAGGTTCCAGGTTGGCAGGTACTCTGCTTGCAGAGAAATCTGGGCATGCTGTTTGAGTTTTATAGGAAAAGCTATTGACATTGAAGCCTGGCAGCTGAACAGGATTACTTGCAAGTTGTTATTCATTTGTTGGAATGATGAGTAGTCAGAAAGGGGATAGTTTATGGCACAAAGAACCAGCCATAGAGCCTCATCATGCCATCCAAGCTATTTCTACCACTATTGCCTTTCAAACTTCTAATACCAGTAAATCCGAGGGTCCAACCTTTGCTAAGGATAACTCATCTTTTGAACGTCTCGTGCCACAGTCAGTATCATCCAATTCCCCTGAACCAGTGGATTCTAACCAAGAAAATCCCTTTCCTCGATTTTCATTACCATCTTCAAGTAAGAAACTGAACTCCAGTCCTAGTGTCCTCAAACATTATCCCTGCCTCGTCAAATGTTATTGATCCAGAGCACATTTCTTCTACATCCTCGACATTTTGTACTGATCTACATTTTTCACCCTCGATTTCACAACATCATCCACCTGGCATCCTGCCATTCCTCCCCCACCCATCAGAAAGTTCACTGCGGGCTTCTGTCATGCCGCCCTCTCAATCTGCATTTTCTCAGTCTCTATTTTCTGGTGATTACATGAAACAGAGCTATGGAGATACACATTCAGGGGATCCCTTGCAGGACATTTTCAACTTCCCTGATGTTGCTTCAGAATGCAGCCAGCGTAATCAGGTTGCTGCCAGTAGTGGAATAGTTGGCCAAGGTCATACTAAACCAGATGAATGGCAAGATTGGTCAGAGCAACTGCCTTCTGATGATGACTCTTTGGTTGCCAGTTGGACTAACCTCCTTGTTGTTGATAGTGGTGAAGAACCTGGCTTGAATACAATATATCCGGCTGCAACGTTGCCAAGTACAGGTTCTGTTTCACAACTCCAGCAGGATCTTTGTGCCCCTGCTGGAGGAAATCAAGTTGCTTCAAGCTCCACATCATCTGGAACTGGGACTTCTAACAAGCCACGGTTGAGATGGACTCCAGAACTCCATGAGAGATTTATCGAAGCTGTTAAGAAGCTACATGGTGCTGAGAAAGCAACTCCAAAAGGTGTTTTGAAGCTCATGAATGTTGAAGGCTTGACAATATATCATGTGAAAAGCCACCTGCAGAAATATCGGATTGCTAAGTATATGCCAGATCAAAGAGAAGGCAAAACTTCTTGCAGTGCTGCTGGAAAAGAAGACAAGAAGAGGAATTCTTCTGATGACTTATCAACTCTGGATCTGAAAGCGGGAATGCAAATTACGGAGGCATTGCGGTTACAGATGGAGATGCAAAAGAAGTTACACGAGCAGCTTGAGGTCCAGAGGGCATTGCAGTTAAAGATAGAAGAACATGGAAAATACCTACAGAAGATGTTTGAAGAGCAACAAAAAACAGATAGCTCATTCAAGAGTCAAAGCCTATCTGCCCCTCGTTCAAGCAATCCGTTTGCTGCTGCAGCTCCCTTTGAGCAGTCTTCTGATGTTGAAGATTATGGTTCCCTATCATTTCCTGCCAAAAGAATTGAGACGGTGCAAAGCGGGGATAAGAGTGTCCGTGGGACACTTCCAGCTGTGAGTGCCAGTGACAAATCATTGCCGATTGTGGTGGTCGCTGACAACAATTCTGAAGTTGTGGCAAACACCGAAAAGACCCCCCGTCGTTGTGGGTCAGGGTCAATTCCAGAGGCCGAAGATGGAACAAAATCACCACCGGCAAAACGTATGAGATCAAACCCCGAGAACACATGTATGGATAAACTAGGTCCTCTATCAAGAGGCTTGGTATCATGAACAATTAGCCTTTGCCTGAATCAGTTTTTGAGACATGCATTTCAACTTTGTCTCAGCAGAGGGATATTTTTATGTGGTGCTGATCACCTTCGGCAGTCTTTAGTGAACAAATATTCCAGCATCTGGATATGGGCTCCGCGAGGATGCATGTGGATTGTAAGTAGAATAGAGAGCAGTGCAGGTCACTGAATTCACAATATTATGCGTTTTGGAGCACCTTTCGAGTGAAACATATGCTTATCATCTGTTCAAATTGTCCTCATTTTATTAATGTTTAGGAGTTTCCAATGATAGTTCGAATTGTGTAACATTTTCTAACACCTGAAACTGTAGCTACCGATATCCTGAAGGGCTTTTCCATAACAAAATATTACTTTCTTAGAGATAAGAGTCTCACTTATTCTACAGCATTGTAAATTATGAAGCGTTATGAAATATGTTT

Ace file of the UniGene sp_v1.1_unigene7931

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor, putative	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	dna binding	-	-	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKH4

Fln msg: Separated hits, possible frame ERROR between 875 and 916,

Fln protein: MMSSQKGDSLWHKEPAIEPHHAIQAISTTIAFQTSNTSKSEGPTFAKDNSSFERLVPQSVSSNSPEPVDSNQENPFPRxxxxxxxxxxxxxxxVSSNIIPASSNVIDPEHISSTSSTFCTDLHFSPSISQHHPPGILPFLPHPSESSLRASVMPPSQSAFSQSLFSGDYMKQSYGDTHSGDPLQDIFNFPDVASECSQRNQVAASSGIVGQGHTKPDEWQDWSEQLPSDDDSLVASWTNLLVVDSGEEPGLNTIYPAATLPSTGSVSQLQQDLCAPAGGNQVASSSTSSGTGTSNKPRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRIAKYMPDQREGKTSCSAAGKEDKKRNSSDDLSTLDLKAGMQITEALRLQMEMQKKLHEQLEVQRALQLKIEEHGKYLQKMFEEQQKTDSSFKSQSLSAPRSSNPFAAAAPFEQSSDVEDYGSLSFPAKRIETVQSGDKSVRGTLPAVSASDKSLPIVVVADNNSEVVANTEKTPRRCGSGSIPEAEDGTKSPPAKRMRSNPENTCMDKLGPLSRGLVS*

Protein Length: 569

Fln nts: AAGAAAACGGCAATAGAGGTTTTACaCTGCAGAAATCTGGAAGCGCGAGTGATGGTATTCATTCACGAAACCTTCTGCTATTCTCTTCAGAAACGGGTCATCCACTGCTGCAGCGTCTGGACGGTCTCCATGAATGATGCAGAAGAAGCGAGTAACATTAGTTGACCGACTACTGCCTCCAATCTGCAGGCAATGCACAGAATCGCATGTTGAATAGCTGGATTTGCAAGAATTTCAAGCATGAATGTTGTGAGCATTGATAAGTTATTTGTGAGCAAGGTGGCAGCAGTAGCAATCACAGTTTAAGTTATATACGGTGTGCATGAATGAATTCCCGCCTGGCTGCTGACTGTACAACATCGTTATTAATAAGGAGTTTGGGTGGATTTAAGTGTCAGGCATTAGCATTGGACTCTTTTCTCTGGAAATCATGCGATTCAAAGTTGTGTTCTTCGTGGTCTGGAATCTATTGAAGTGGCTGTAAGAAAAGGTGCTTTGCAGTGAAAGGTTCCAGGTTGGCAGGTACTCTGCTTGCAGAGAAATCTGGGCATGCTGTTTGAGTTTTATAGGAAAAGCTATTGACATTGAAGCCTGGCAGCTGAACAGGATTACTTGCAAGTTGTTATTCATTTGTTGGA_-_ATGATGAGTAGTCAGAAAGGGGATAGTTTATGGCACAAAGAACCAGCCATAGAGCCTCATCATGCCATCCAAGCTATTTCTACCACTATTGCCTTTCAAACTTCTAATACCAGTAAATCCGAGGGTCCAACCTTTGCTAAGGATAACTCATCTTTTGAACGTCTCGTGCCACAGTCAGTATCATCCAATTCCCCTGAACCAGTGGATTCTAACCAAGAAAATCCCTTTCCTCGATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTGTCCTCAAACATTATCCCTGCCTCGTCAAATGTTATTGATCCAGAGCACATTTCTTCTACATCCTCGACATTTTGTACTGATCTACATTTTTCACCCTCGATTTCACAACATCATCCACCTGGCATCCTGCCATTCCTCCCCCACCCATCAGAAAGTTCACTGCGGGCTTCTGTCATGCCGCCCTCTCAATCTGCATTTTCTCAGTCTCTATTTTCTGGTGATTACATGAAACAGAGCTATGGAGATACACATTCAGGGGATCCCTTGCAGGACATTTTCAACTTCCCTGATGTTGCTTCAGAATGCAGCCAGCGTAATCAGGTTGCTGCCAGTAGTGGAATAGTTGGCCAAGGTCATACTAAACCAGATGAATGGCAAGATTGGTCAGAGCAACTGCCTTCTGATGATGACTCTTTGGTTGCCAGTTGGACTAACCTCCTTGTTGTTGATAGTGGTGAAGAACCTGGCTTGAATACAATATATCCGGCTGCAACGTTGCCAAGTACAGGTTCTGTTTCACAACTCCAGCAGGATCTTTGTGCCCCTGCTGGAGGAAATCAAGTTGCTTCAAGCTCCACATCATCTGGAACTGGGACTTCTAACAAGCCACGGTTGAGATGGACTCCAGAACTCCATGAGAGATTTATCGAAGCTGTTAAGAAGCTACATGGTGCTGAGAAAGCAACTCCAAAAGGTGTTTTGAAGCTCATGAATGTTGAAGGCTTGACAATATATCATGTGAAAAGCCACCTGCAGAAATATCGGATTGCTAAGTATATGCCAGATCAAAGAGAAGGCAAAACTTCTTGCAGTGCTGCTGGAAAAGAAGACAAGAAGAGGAATTCTTCTGATGACTTATCAACTCTGGATCTGAAAGCGGGAATGCAAATTACGGAGGCATTGCGGTTACAGATGGAGATGCAAAAGAAGTTACACGAGCAGCTTGAGGTCCAGAGGGCATTGCAGTTAAAGATAGAAGAACATGGAAAATACCTACAGAAGATGTTTGAAGAGCAACAAAAAACAGATAGCTCATTCAAGAGTCAAAGCCTATCTGCCCCTCGTTCAAGCAATCCGTTTGCTGCTGCAGCTCCCTTTGAGCAGTCTTCTGATGTTGAAGATTATGGTTCCCTATCATTTCCTGCCAAAAGAATTGAGACGGTGCAAAGCGGGGATAAGAGTGTCCGTGGGACACTTCCAGCTGTGAGTGCCAGTGACAAATCATTGCCGATTGTGGTGGTCGCTGACAACAATTCTGAAGTTGTGGCAAACACCGAAAAGACCCCCCGTCGTTGTGGGTCAGGGTCAATTCCAGAGGCCGAAGATGGAACAAAATCACCACCGGCAAAACGTATGAGATCAAACCCCGAGAACACATGTATGGATAAACTAGGTCCTCTATCAAGAGGCTTGGTATCATGA___ACAATTAGCCTTTGCCTGAATCAGTTTTTGAGACATGCATTTCAACTTTGTCTCAGCAGAGGGATATTTTTATGTGGTGCTGATCACCTTCGGCAGTCTTTAGTGAACAAATATTCCAGCATCTGGATATGGGCTCCGCGAGGATGCATGTGGATTGTAAGTAGAATAGAGAGCAGTGCAGGTCACTGAATTCACAATATTATGCGTTTTGGAGCACCTTTCGAGTGAAACATATGCTTATCATCTGTTCAAATTGTCCTCATTTTATTAATGTTTAGGAGTTTCCAATGATAGTTCGAATTGTGTAACATTTTCTAACACCTGAAACTGTAGCTACCGATATCCTGAAGGGCTTTTCCATAACAAAATATTACTTTCTTAGAGATAAGAGTCTCACTTATTCTACAGCATTGTAAATTATGAAGCGTTATGAAATATGTTT

Fln Alignment:

sp_v1.1_unigene7931___MMSSQKGDSLWHKEPAIEPHHAIQAISTTIAFQTSNTSKSEGPTFAKDNSSFERLVPQSVSSNSPEPVDSNQENPFPRFxxxxxxxxxxxxxxVSSNIIPASSNVIDPEHISSTSSTFCTDLHFSPS-ISQHHPPGILPFLPHPSESSLRASVMPPSQSAFSQSLFSGDYMKQSYGDTHSGDPLQDIFNFPDVASECSQRNQVAASSGIVGQGHTKPDEWQDWSEQLPSDDDSLVASWTNLLVVDSGEEPGLNTIYPAATLPSTGSVSQLQQDLCAPAGGNQVAXXXXXXXXXXXNKPRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRIAKYMPDQREGKTSCSAAGKEDKKRNSSDDLSTLDLKAGMQITEALRLQMEMQKKLHEQLEVQRALQLKIEEHGKYLQKMFEEQQKTDSSFKSQSLSAPRSSNPFAAAAPFEQSSDVEDYGSLSFPAKRIETVQSGDKSVRGTLPAVSASDKSLPIVVVADNNSEVVANTEKTPRRCGSGSIPEAEDGTKSPPAKRMRSNPENTCMDKLGPLSRGLVS
B8LKH4______________MMSSQKADRLWHGESAIEPHHAVQAVSTTIASQISNTSKSEGPTFAKDNSSFQRLVPQAVSSDSPEPVDSGQENPFPRFxxxxxxxxxxxxxxMSSNIIPALSNVVNPENISSTSSTFCTDLHFSPSSISQHHPPGILPFLPHPSECSLRASVMPPSQSAFSQSLFSGDYMKQSYGDTHTGDPLQDIFNFPDVASECSQRNQGATSSGIVGQGHTEPDEWQDWPEQLPSDDDSLVANWTDLLVVESGEDPGLNTIYPAAKLPTTGSISQLHQGFCAPAGGNQFASSSTSSGTGTSNKQRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRIAKYMPDQGEGKTSCYAAGKEDKKRNSSDDLPTLDLKAGMQITEALRLQMEMQKKLHEQLEVQRALQLKIEEHGKYLQKMFEEQQKTDSSFKSQSLSAPRSSNPFAAAGPLEQSSDVEEDGSRSFPAKRIETVQNKDNSGRGTLLAVGARDKSLP-VVVADNNSEVVADTEKTP-PCGSGSIPDAEDGIKAPPAKRIRSNPDNTCMDKLGPLSTGLVS

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
284		33	66		1.0
287		33	66		1.0
289		66		33	1.0
290	66		33		1.0
291	33		66		1.0
293	66	33			1.0
294			66	33	1.0
296	66		33		1.0
299	66			33	1.0
300	66		33		1.0
305	66			33	1.0
306		33	66		1.0
307	33			66	1.0
364	85		14		0.993533
369			14	85	0.993533
371		14		85	0.993533
373	85			14	0.993533
374	85		14		0.993533
375			14	85	0.993533
376	85	14			0.993533
377	85			14	0.993533
379			85	14	0.993533
381		14	85		0.993533
383		14		85	0.993533
384	14			85	0.993533
386		12	87		0.992554
389		12	87		0.992554
393			12	87	0.992554
394	12			87	0.992554
395	87	12			0.992554
396	87	12			0.992554
397			87	12	0.992554
400			12	87	0.992554
402	87			12	0.992554
404			87	12	0.992554
407		12		87	0.992554
409	87	12			0.992554
410	12		87		0.992554
481			14	85	0.993533
489	87			12	0.992554
491	87			12	0.992554
492	87	12			0.992554
493	75		12	12	0.975346
494	75	12		12	0.975346
495		12	87		0.992554
496	12		87		0.992554
497		12		87	0.992554
502			25	75	1.0
505	75			25	1.0
508		25	75		1.0
510	75	25			1.0
511	75			25	1.0
512		25	75		1.0
513	25		75		1.0
951		85	15		1.0
956		85	15		1.0
958	85	15			1.0
959	85	15			1.0
963			15	85	1.0
964	85		15		1.0
965		15		85	1.0
973		15	85		1.0
974	85			15	1.0
2045			33	66	0.997452
2089	75		25		0.996473
2228	12		87		0.992554
2381		10		89	0.999919
2583		90		10	0.90298
2584	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain