SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7930

Length: 1549 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7930

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os08g0386700 protein n=4 Tax=Oryza sativa RepID=Q6ZA16_ORYSJ	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	beta- -galactosyltransferase sqv-	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	81%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 31	IPR002659	-	0.0	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVS4

Fln msg: your sequence is shorter than subject: 265 - 340

Fln protein: KNRLAALEMELAAARKQGFVPKHSMVENGTTTSRRLMAVIGIMTEFGHRSNRDSIRKSWMPTGTKLRKLEEDKGIIIRFVLGRSANRGDIYDKAIDDENRQTKDFFILENHVESSEDLSKKSKLYFSNAADTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMKSGEVFSNPSHKWYEPESWKFGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYAHEDVSVGSWMLGLSVKHIDESQLCCTKSSQGGICATG*

Protein Length: 266

Fln nts: AAGAACAGATTAGCAGCACTAGAGATGGAGTTAGCTGCAGCCAGGAAGCAAGGTTTTGTTCCAAAGCATTCAATGGTTGAGAATGGTACAACTACAAGCAGAAGGTTGATGGCTGTGATAGGAATCATGACAGAGTTTGGTCATAGGTCCAACAGAGACTCAATAAGGAAGTCATGGATGCCAACTGGCACAAAGTTAAGAAAACTGGAAGAAGACAAAGGAATCATCATCCGTTTTGTTCTAGGTCGAAGTGCAAACAGGGGAGATATTTATGACAAAGCTATTGATGATGAAAACCGGCAAACGAAAGATTTTTTTATTCTTGAAAACCATGTGGAGTCTTCTGAGGATTTGTCCAAAAAGTCTAAACTATATTTCAGCAATGCTGCTGATACCTGGGATGCTGACTTCTATGTCAAGGTTCAAGATAATGTTTTTGTTAATATAGATAAACTGGGGGCAATGCTTGCCACACACTGGGATAAACCACGTGCTTACATTGGGTGCATGAAATCGGGAGAGGTTTTCTCCAATCCGAGCCACAAGTGGTATGAACCGGAATCATGGAAGTTTGGAGATGGGAAATCATATTTTCGTCATGCATCTGGTGAAATGTATGTCGTATCACGAGCTGTGGCACAGTTCATTTCAATAAACAATGCTATTCTCCAAACATACGCACATGAAGATGTATCAGTTGGATCATGGATGTTGGGTTTGTCTGTCAAGCATATTGATGAAAGCCAGCTTTGTTGTACAAAATCAAGTCAAGGTGGAATATGCGCAACCGGTTAA___AGACATTTATGAAAGATGACGTCTGTTCTTATATGGATAAACCCTTTGACCTAATGTCTTTTCAGCCTACTGCAATTTCATCTTCAGTAACATTATTTCGACTATGCTGATTGCAAAGTGAAAATGAGAGCAGATGCATTGAAACTACGGGAGCACAAGGCAGTATTATCCATCGGGATCCATAGAGTCAACTTTGCTTATCAATCTTGAGCAATTCCAGTGTCTTTAAAATTTTTTAATAGGAGGTTACCATTCATTTCCACAATATCTGTGGCGTATAGGTCTTACATATTTATGTTTTATATGCGAGGGTTCACAAAGTGGTGGAATGCGAATATGGGGAAATCTGCTCGAACATTCACATTCATCTAGTTTCCTCGGATCTGAAATACAGGGGATTTTAGGCTGAGGAAACTTTTGTATCTCCCTTCTTTTTATTATTTGTGGAGGATAAGTGGCCATGTCCATCTGTCCGTGTATCAATAGACAAGGAAATCATGTTATACTGTTTCTTTTCCATTTTGAAAACCAGAAATAGGGCATTGAGAGCCTGGTTAATATTCAACTCATTCTATTATTAAACAAGACCAAAAATTATGCACTGGGTATACTTGTCTATTATTACAAAATAGACTAAATGATTCATCGATGGTCACATCTTCTCAACCTGAACACAATTAGCAAGTCTATTTAACGTTGAAAACTCTGTCGTGACAATTCCATGGAAAAAACAGGAGACTAACTACAGATTTAA

Fln Alignment:

sp_v1.1_unigene7930___RKQGFVPKHSMVENGTTTSRRLMAVIGIMTEFGHRSNRDSIRKSWMPTGTKLRKLEEDKGIIIRFVLGRSANRGDIYDKAIDDENRQTKDFFILENHVXXXXXXXXXXXXYFSNAADTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMKSGEVFSNPSHKWYEPESWKFGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYAHEDVSVGSWMLGLSVKHIDESQLCCTKSSQGGICAT
A9NVS4______________RQQGFVPKHSMVENDTTTGRRLMAVVGIMTEFGHRSHRDSIRKSWMPTGTKLRKLEEDKGIIIRFVVGRSANRGDIYDKAIDDENRQTKDFFILENHVESSEELPKKPKLYFSNAADTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMKSGEVFSNPSHKWYEPESWKFGDGKSYFRHASGEMYVVSRAIAQFISINNAILQTYAHEDVSVGSWMLGLSVKHIDESQLCCSKSTQGGICAT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
233			66	33	0.997452
325	33			66	0.997452
328	66		33		0.997452
329	66		33		0.997452
1039		10	90		0.999898
1362	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain