SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7920

Length: 1222 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7920

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytol kinase 1, chloroplastic n=2 Tax=Arabidopsis RepID=PHYK1_ARATH	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	phytol kinase	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	vitamin E biosynthetic process	GO:0010189	Biological Process	67%
Blast2go	phytol kinase activity	GO:0010276	Molecular Function	67%
Blast2go	cell part	GO:0044464	Cellular Component	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Z1

Fln msg: Overlapping hits, possible frame ERROR between 464 and 454, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 276 - 375

Fln protein: QCWAPLL*TCM*RKTLEFSIHVL*QWAQFCKVINCSYRIWPWSTATAMDMGCTALVMVGAYGLVSAFVSLAVTILSGILFMMSWPLFSASEDARYIAAIVPLANFLRLLIYGLKLATNEALVNAVSRKGSPEELLRGPMYYVMALIFCTIxxxxxTPIGMVSLAMMCGGDGIADIIGRRFGQYKLPYNNEKSWAGSIAMFLFGFLISLGILYYFSLFGFIDLDWETTARNVAIISMAATVVESLPVTLTRFLDDNISVPSTCILVGLCLFPMQSS*

Protein Length: 277

Fln nts: TCCAATGCTGGGCACCTCTGCTATAGACCTGCATGTGAAGGAAAACACTTGAGTTTAGCATTCACGTGCTATAACAATGGGCCCAGTTTTGTAAAGTTATCAACTGCAGCTACAGAATCTGGCCTTGGTCGACTGCTACGGCAATGGACATGGGCTGTACAGCCCTGGTCATGGTGGGAGCTTATGGTTTAGTATCTGCCTTCGTGTCCTTGGCTGTGACTATCTTATCAGGAATATTATTCATGATGTCCTGGCCTCTTTTCAGTGCTTCTGAAGATGCCCGTTATATTGCTGCAATTGTGCCTCTAGCAAATTTTTTAAGGCTTCTGATTTACGGACTCAAATTAGCAACAAATGAAGCGTTAGTCAATGCTGTGAGCAGAAAGGGCAGCCCTGAGGAATTATTAAGAGGACCTATGTATTACGTGATGGCTCTAATTTTCTGCACCATTxxxxxxxxxxxxxxxACCCCTATAGGAATGGTTTCTTTGGCAATGATGTGTGGCGGGGATGGTATAGCTGATATTATAGGAAGAAGATTTGGACAATATAAGCTTCCTTATAACAACGAGAAAAGCTGGGCAGGAAGTATAGCTATGTTTCTATTTGGCTTCTTGATTTCCCTGGGGATTTTGTACTATTTCTCTTTATTTGGATTCATTGATCTAGATTGGGAGACTACAGCTCGAAATGTTGCAATAATATCAATGGCTGCAACCGTTGTTGAATCCCTTCCGGTAACATTAACAAGGTTTTTGGATGACAACATTTCAGTTCCTTCAACATGCATACTGGTTGGGCTCTGCCTTTTTCCAATGCAAAGTTCATAAGGAACCAGTTTGAAGATATTATAGTTGAAGAAATATTCGTGCAAAGTTCATACGGAACCAGTTTGAAGATATTATAGTTGGAAGTAGCATGAAGAATGCACTTTGAACGATGCTCAAAATACGGGTTTACTGTACAAATTCTGTGCTGTGCCATGTCATAAAGAACATGACAGTTCTATTCAATCGGAGCCAAAATACCAAGTTTTTCGGTGGGAGAACTGTAATGAAACCTCCAATATGATCAATAGAATCGAGAACAATAAAGATTTTATTACATAGTGGAACCTTCTATATTTATAAAAGCTATAACATTAACATGTTAATGTTTAGTGTGGTAGTGTGATTACATTAACATGTTAATGTTTAGCGTGGTAGTGTGATTACACTAGATTCA

Fln Alignment:

sp_v1.1_unigene7920___VTILSGILFMMSWPLFSASEDARYIAAIVPLANFLRLLIYGLKLATNEALVNAVSRKGSPEELLRGPMYYVMALIFCTIFxxxETPIGMVSLAMMCXXXXXXXXXXXXXXQYKLPYNNEKSWAGSIAMXXXXXXXXXXXXYYFSLFGFIDLDWETTARNVAIISMAATVVESLPVTLTRFLDDNISVPSTCILVGLCLF
D5A9Z1______________VHISIGLIFMLFWPVFSTGPQAPYLAALAPGLNIFRMIGLGLGILKNEAMVKSMSRHGNARELLKGPLYYASTITLVTVIxxxISPIGPVTISNLCAGDGFADIVGRRLGTVKLPYNKNKSFAGSFTMLLMGFIFSVGYLFYFASFGYYEVSTRMILSSL-LISIVATVVESLPISTE--LDDNLTVPLVSVLVGVLLF

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
549	66		33		0.997452
560	66		33		0.997452
594	75			25	0.996473
595		25	75		0.996473
597	75	25			0.996473
602			25	75	0.996473
603	75			25	0.996473
605	25	75			0.996473
606		25		75	0.996473
608			25	75	0.996473
610		25		75	0.996473
611		25		75	0.996473
684			88	11	0.923564
685		10	90		0.90298
687		10	90		0.90298
720		10	90		0.90298
722		90		10	0.90298
723		10		90	0.90298
725		90		10	0.90298
726	90		10		0.90298
734			10	90	0.90298
735		90		10	0.90298
737	90			10	0.90298
738	90		10		0.90298
741	10	90			0.90298
746	10	90			0.90298
763		11		88	0.923564
775	90		10		0.90298
776	90		10		0.90298
808			90	10	0.90298
950	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain