SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7917

Length: 876 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7917 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LINC4; LINC4 (LITTLE NUCLEI4)	-	-	43%
FL-Next	sp=Putative nuclear matrix constituent protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	45%
Blast2go	linc4 (little nuclei4)	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	nucleus organization	GO:0006997	Biological Process	68%
Blast2go	cytosol	GO:0005829	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FLH0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 242 aas, your sequence is shorter than subject: 260 - 1042

Fln protein: MGTEMRLTKNERDELLDLQTKLKEEIDDLRAQKQELLKEADELNVEKEKFEREWEILDEKREQLRNELEWVDDERKKVPKWLKDEEERLKQEKIVLREEIKRDAEGLRLEKEALESSMQHQRAVLFAEVQRERADLVRDIELRTSELENSIESRREELERHYQEKESSFLKEKEKEILYISAQRELLRKETEDMKSERQRLEKERKEITTNQEHTEKEWSEMKKDIEELQVQREKLKEQRESLHSEREELRAQLEELKN*

Protein Length: 261

Fln nts: ATGGGAACAGAGATGAGGCTCACAAAAAATGAAAGGGACGAGTTGCTGGATTTACAAACCAAACTGAAAGAAGAGATTGATGACTTAAGAGCTCAGAAGCAGGAATTATTGAAGGAAGCTGATGAGTTAAATGTAGAAAAGGAAAAATTTGAGAGGGAGTGGGAAATTCTGGATGAGAAAAGAGAGCAACTCAGGAATGAACTAGAATGGGTTGATGATGAGAGGAAGAAAGTACCAAAATGGCTGAAGGATGAAGAAGAAAGATTAAAGCAAGAGAAGATTGTGTTGAGGGAAGAAATAAAGCGTGATGCAGAAGGTCTCCGTCTTGAGAAAGAGGCTTTGGAAAGCAGTATGCAGCATCAACGAGCTGTGTTGTTTGCCGAAGTTCAGAGGGAGAGGGCAGATCTTGTCCGAGATATTGAGTTGCGAACCAGTGAATTGGAAAACAGTATTGAAAGTAGACGGGAAGAGTTAGAGAGGCATTACCAGGAAAAAGAGTCATCATTCTTAAAAGAAAAAGAGAAAGAAATCCTGTATATTAGTGCACAAAGGGAACTGTTACGTAAGGAAACAGAAGACATGAAATCAGAAAGACAGAGACTGGAGAAAGAAAGGAAGGAAATTACCACAAATCAGGAGCATACAGAGAAAGAGTGGTCTGAAATGAAGAAAGATATTGAAGAACTCCAGGTCCAAAGAGAAAAGCTAAAGGAACAGCGAGAGTCACTGCACAGTGAAAGAGAAGAACTACGAGCACAGCTTGAAGAACTAAAAAATTAAAAGATGAGTTAAAAATGACAGAAGAGAGCTTAAAGGTTTCTGAGCAGCAACTTTCACAGGTCAATATAAATGAATGTGAAAGTTATTTCTCCTGAG

Fln Alignment:

sp_v1.1_unigene7917___EMRLTKNERDELLDLQTKLKEEIDDLRAQKQELLKEADELNVEKEKFEREWEILDEKREQLRNELEWVDDERKKVPKWLKDEEERLKQEKIVLREEIKRDAEGLRLEKEALESSMQHQRAVLFAEVQRERADLVRDIELRTSELENSIESRREELERHYQXXXXXXXXXXXXEILYISAQRELLRKETEDMKSERQRLEKERKEITTNQEHTEKEWSEMKKDIEELQVQREKLK
Q9FLH0______________KLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLE

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
285		20		80	0.995493
763	10	90			0.90298
764			10	90	0.90298
766		90	10		0.90298
767	10	90			0.90298
768		10		90	0.90298
769	10			90	0.90298
770		90	10		0.90298
771	80	20			0.999996
772	80	20			0.999996
776			11	88	0.923564
777			11	88	0.923564
778	11	88			0.923564
779		88	11		0.923564
780		11	11	77	0.968132
781	11	11	77		0.968132
783	22		11	66	0.999999
784			12	87	0.992554
786		14		85	0.993533
787	14		85		0.993533
790		85	14		0.993533
793		14		85	0.993533
794			14	85	0.993533
796	83	16			0.994512
801		20		80	0.995493
825		25		75	0.996473
826		25	75		0.996473
827		25		75	0.996473
829	75			25	0.996473
849		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain