SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7904

Length: 2966 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7904
CGTCGTGACCTTGGCTGTCATCTCAATTGTGCTCTTCGCGGCTCGCGGCTCACAGGAACGCGTTGGTAGAACTTGTATCCATTTTCAGACCAATTTGGCCATTGGAATACCTTAATTACCAGCAGACCCTTATATTGATGATCGTTGGTTGTATCGACGTTGAGAATACACCTTGAAGTTTCAAGATAGTCTCTGGATAGAGCTAATTCTACAGCTTTCGCTACCTTCTCTTTGAATTGAAATCGCGGCTTACCGGGACGCTTGAATATATACTCTGTTTACGTTGCTTTTAAGTTCGTGTTTTCTGTCGCGATTGTTGGGAGCAGGCATGGCTTTGGTTGTTAAGGCAAAATATAACACTTCTCTGAGGAGATTCAATGTGCTTCCAATGGAAGATGGCAGTCTGGACCTCTCCCTGGCTGGGCTAAGATCTAAAATCTGCGAGCTTTTCCAATTCAATCCATCTGCACAGTTTGTTATAACATATGTTGATGAAGACAATGATATTGTAACTATGGCAGATGACAATGATCTTCTTGATGTCTTGAATCAAGGTTTAAATCCTTTGCGCTTGGAGGTGTCTCTGATGAGTCAGAATAATAGGGCCACAGAAAAACAGGCTCAAAGCCAACCTTCAACCCCAAGGAATTTTTCAATAACCAAGGAGCAGGGGCAAGCTTTTGATCTAAGAAGTATTTGTTCAGAGGAAACCTTGAAATTATTACCTGAGCCTTTACGCAAGGCAATTCTAAAATGTACCAAGGAAACTGCAAATCTTGCCTCCACCGCAGCAGTGGCAGAATTGATAGAAGGTGTCGTCAAACTTGTCTCTACTCATCTTGGACCTCTCATGGAAAGGCAGCAAACTGGTGGAGCAGGCACTGGCACTCAACCAAATAGTACCGTTCCTTTCATCAATGTGTCAGCGGAGCAGGGTACTGGCAATGCTCAACCAACTTCAGGGGATCGCTTTATTCCTTCACCACAGCTTCCATTTGGACAGGTTCATGGTTTTGGTTTAAAAGGGAATCAATGCCTTGGTGAGAATTTGCATCGGACCTTTCACAAAGGTGTACAATGTGATGGTTGTGGGATGCATCCAATTATTGGCCCCCGCTACAAGTCTTTAGTGAAAGATGACTATGATTTGTGCCAAAGCTGCTTCTCGGATGTTGGCAATGAAGAAGAGTATATGAAACTTGATCGTGCTTTATACAGGCCACCAGCTCTATACCGGTCACCACACAAGGAACGCTCTTTTCATAGGGGACGTCACTTTCATAAGTCGCCTGTTTTTTATCCTTCTAAATGTCCTGCATTTACCCCCCCTCCTGGTTGTAATCTTTGGAATTCTCCTACATCTATATATTGTTCACAAGGCCCATCTGCTGGGAAACCGGCTAATAAAGCACCTGGAAAGCTTGACTGCCGTTTCGTTCAAGATGTCACTATCTTTGATGGAACACAGTTTGCTCCAGGGACACCCTTTACCAAGATTTGGCGTCTGCGCAACAATGGTACGCTAAAGTGGCCACATCAAACCCAACTTGTCCGAGTTGGTGGAGATGATTTGGGGGCTGGAGATGTAGTCAATCTCGAGATTCAAGAGGAAGGGTACGAGGTAGATGAGGAGCTTGATGCGGCAGTTGATTTTCTTGCCCCCATACAACCCGGACGCTATGTGTCATACTGGCGTCTGGTGGCACCTTCAGGTCAAAAGTTTGGGCAACGAGTGTGGGTCCTTATTCAGGTAGTACCACCAAGAGAGGAATGTCTACCCGATCTAATGGACTCTCTTCTAACTTTGAATGATGTTGAACAAAATAATTTAACTCAAGAACAGACCCAACAGAAGACAGTTGATGGTTCTTCTCAAGATACTTCTGAAAGGGCATGTTTGGGTGACAGTAAGATGGATTTGGATCCCAATGAGCTTGGATGCTCATCTATGGTCGCGGAGAAGGGTAAGCAACCATCTTCACTTGTTGAGGTGGGTAATGCTTTTACACAATCTCAGAGGGTTGATTTTCCAACAGAAATGCAAGGAGGCAGCAGCATAAATGTTGAAGTAATGCCATCTGATTTAGGAGCTGATTACCCATCACCTGCTAAATCAGTTCCACTACCAGTTCATGATGTATCTCGAGGACATATCGCTGTGTCTGCTAGTGCTCCATCTCTTGTAGGCTCTGAATCATTCTTTGCTGGGAAAGTGACAGAAGAGCAGACTCTTCTCCGTGAGCTTGAAGACATGGGTTTCAATCAGAGGATGCTGAATGCTGAACTACTCCGAAAACATAATTATGATTTACAGAAAACTCTTGATGATCTTTGTAGTGCAGCTGAGTGGGATCCCATTCTTGAAGAGCTTCAAGAAATGGGTTTCCATGATTCGGAAATGAACAGAACGTTGTTGGTGAAGAATGACGGGAGTGTAAAGAGAGTTGTTCTGGATCTTCTGTCAGCTGAAAAAGATGCTTCATCAATGCAATTTAATCTGTCTAAGAAGGCTAAACAGAGTTAGCTATGGAAGTGGGGTCGATTTTAAGTCTTTGTTGGGCAGTAGGGACATGTGAACTCGGCGTTTTTTCTTACAACTCGTAATAAGCCGTCTATATTTATGTTTGGTTTGTTTTCAAGTAGACGTCTGTGTTACCTGCCATACGCAGGTGTTGTTTGTACTTGTGATTGTTTTGAATTGGATCAATGGATATTGATACTCAAGCACTTAAGCAGTTCCTATTTGGTTAGATGTATGTTTTTTAATATGATGTATTCCAGTGTTTAGTTGGCACTACACCATTCATGAGCCATTTCTTAGTAATTAATAGATTATATGATGAAGTTCTTTTTGTTCAGCAATGCTTATATGCGTTGTGTTTCTACTTGTAGGGTTTGTTGGAGTCTTGTAATCATGATTGTTTGCTTTTAATTGACAATATGCATATGCATACTTCTGAGTTGGA

Ace file of the UniGene sp_v1.1_unigene7904

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	54%

Source	InterPros	Term	Type	Identity
Blast2go	Phox/Bem1p	IPR000270	-	54%
Blast2go	Zinc finger, ZZ-type	IPR000433	-	54%
Blast2go	UBA-like	IPR009060	-	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPV6

Fln msg:

Fln protein: MALVVKAKYNTSLRRFNVLPMEDGSLDLSLAGLRSKICELFQFNPSAQFVITYVDEDNDIVTMADDNDLLDVLNQGLNPLRLEVSLMSQNNRATEKQAQSQPSTPRNFSITKEQGQAFDLRSICSEETLKLLPEPLRKAILKCTKETANLASTAAVAELIEGVVKLVSTHLGPLMERQQTGGAGTGTQPNSTVPFINVSAEQGTGNAQPTSGDRFIPSPQLPFGQVHGFGLKGNQCLGENLHRTFHKGVQCDGCGMHPIIGPRYKSLVKDDYDLCQSCFSDVGNEEEYMKLDRALYRPPALYRSPHKERSFHRGRHFHKSPVFYPSKCPAFTPPPGCNLWNSPTSIYCSQGPSAGKPANKAPGKLDCRFVQDVTIFDGTQFAPGTPFTKIWRLRNNGTLKWPHQTQLVRVGGDDLGAGDVVNLEIQEEGYEVDEELDAAVDFLAPIQPGRYVSYWRLVAPSGQKFGQRVWVLIQVVPPREECLPDLMDSLLTLNDVEQNNLTQEQTQQKTVDGSSQDTSERACLGDSKMDLDPNELGCSSMVAEKGKQPSSLVEVGNAFTQSQRVDFPTEMQGGSSINVEVMPSDLGADYPSPAKSVPLPVHDVSRGHIAVSASAPSLVGSESFFAGKVTEEQTLLRELEDMGFNQRMLNAELLRKHNYDLQKTLDDLCSAAEWDPILEELQEMGFHDSEMNRTLLVKNDGSVKRVVLDLLSAEKDASSMQFNLSKKAKQS*

Protein Length: 733

Fln nts: CGTCGTGACCTTGGCTGTCATCTCAATTGTGCTCTTCGCGGCTCGCGGCTCACAGGAACGCGTTGGTAGAACTTGTATCCATTTTCAGACCAATTTGGCCATTGGAATACCTTAATTACCAGCAGACCCTTATATTGATGATCGTTGGTTGTATCGACGTTGAGAATACACCTTGAAGTTTCAAGATAGTCTCTGGATAGAGCTAATTCTACAGCTTTCGCTACCTTCTCTTTGAATTGAAATCGCGGCTTACCGGGACGCTTGAATATATACTCTGTTTACGTTGCTTTTAAGTTCGTGTTTTCTGTCGCGATTGTTGGGAGCAGGC_-_ATGGCTTTGGTTGTTAAGGCAAAATATAACACTTCTCTGAGGAGATTCAATGTGCTTCCAATGGAAGATGGCAGTCTGGACCTCTCCCTGGCTGGGCTAAGATCTAAAATCTGCGAGCTTTTCCAATTCAATCCATCTGCACAGTTTGTTATAACATATGTTGATGAAGACAATGATATTGTAACTATGGCAGATGACAATGATCTTCTTGATGTCTTGAATCAAGGTTTAAATCCTTTGCGCTTGGAGGTGTCTCTGATGAGTCAGAATAATAGGGCCACAGAAAAACAGGCTCAAAGCCAACCTTCAACCCCAAGGAATTTTTCAATAACCAAGGAGCAGGGGCAAGCTTTTGATCTAAGAAGTATTTGTTCAGAGGAAACCTTGAAATTATTACCTGAGCCTTTACGCAAGGCAATTCTAAAATGTACCAAGGAAACTGCAAATCTTGCCTCCACCGCAGCAGTGGCAGAATTGATAGAAGGTGTCGTCAAACTTGTCTCTACTCATCTTGGACCTCTCATGGAAAGGCAGCAAACTGGTGGAGCAGGCACTGGCACTCAACCAAATAGTACCGTTCCTTTCATCAATGTGTCAGCGGAGCAGGGTACTGGCAATGCTCAACCAACTTCAGGGGATCGCTTTATTCCTTCACCACAGCTTCCATTTGGACAGGTTCATGGTTTTGGTTTAAAAGGGAATCAATGCCTTGGTGAGAATTTGCATCGGACCTTTCACAAAGGTGTACAATGTGATGGTTGTGGGATGCATCCAATTATTGGCCCCCGCTACAAGTCTTTAGTGAAAGATGACTATGATTTGTGCCAAAGCTGCTTCTCGGATGTTGGCAATGAAGAAGAGTATATGAAACTTGATCGTGCTTTATACAGGCCACCAGCTCTATACCGGTCACCACACAAGGAACGCTCTTTTCATAGGGGACGTCACTTTCATAAGTCGCCTGTTTTTTATCCTTCTAAATGTCCTGCATTTACCCCCCCTCCTGGTTGTAATCTTTGGAATTCTCCTACATCTATATATTGTTCACAAGGCCCATCTGCTGGGAAACCGGCTAATAAAGCACCTGGAAAGCTTGACTGCCGTTTCGTTCAAGATGTCACTATCTTTGATGGAACACAGTTTGCTCCAGGGACACCCTTTACCAAGATTTGGCGTCTGCGCAACAATGGTACGCTAAAGTGGCCACATCAAACCCAACTTGTCCGAGTTGGTGGAGATGATTTGGGGGCTGGAGATGTAGTCAATCTCGAGATTCAAGAGGAAGGGTACGAGGTAGATGAGGAGCTTGATGCGGCAGTTGATTTTCTTGCCCCCATACAACCCGGACGCTATGTGTCATACTGGCGTCTGGTGGCACCTTCAGGTCAAAAGTTTGGGCAACGAGTGTGGGTCCTTATTCAGGTAGTACCACCAAGAGAGGAATGTCTACCCGATCTAATGGACTCTCTTCTAACTTTGAATGATGTTGAACAAAATAATTTAACTCAAGAACAGACCCAACAGAAGACAGTTGATGGTTCTTCTCAAGATACTTCTGAAAGGGCATGTTTGGGTGACAGTAAGATGGATTTGGATCCCAATGAGCTTGGATGCTCATCTATGGTCGCGGAGAAGGGTAAGCAACCATCTTCACTTGTTGAGGTGGGTAATGCTTTTACACAATCTCAGAGGGTTGATTTTCCAACAGAAATGCAAGGAGGCAGCAGCATAAATGTTGAAGTAATGCCATCTGATTTAGGAGCTGATTACCCATCACCTGCTAAATCAGTTCCACTACCAGTTCATGATGTATCTCGAGGACATATCGCTGTGTCTGCTAGTGCTCCATCTCTTGTAGGCTCTGAATCATTCTTTGCTGGGAAAGTGACAGAAGAGCAGACTCTTCTCCGTGAGCTTGAAGACATGGGTTTCAATCAGAGGATGCTGAATGCTGAACTACTCCGAAAACATAATTATGATTTACAGAAAACTCTTGATGATCTTTGTAGTGCAGCTGAGTGGGATCCCATTCTTGAAGAGCTTCAAGAAATGGGTTTCCATGATTCGGAAATGAACAGAACGTTGTTGGTGAAGAATGACGGGAGTGTAAAGAGAGTTGTTCTGGATCTTCTGTCAGCTGAAAAAGATGCTTCATCAATGCAATTTAATCTGTCTAAGAAGGCTAAACAGAGTTAG___CTATGGAAGTGGGGTCGATTTTAAGTCTTTGTTGGGCAGTAGGGACATGTGAACTCGGCGTTTTTTCTTACAACTCGTAATAAGCCGTCTATATTTATGTTTGGTTTGTTTTCAAGTAGACGTCTGTGTTACCTGCCATACGCAGGTGTTGTTTGTACTTGTGATTGTTTTGAATTGGATCAATGGATATTGATACTCAAGCACTTAAGCAGTTCCTATTTGGTTAGATGTATGTTTTTTAATATGATGTATTCCAGTGTTTAGTTGGCACTACACCATTCATGAGCCATTTCTTAGTAATTAATAGATTATATGATGAAGTTCTTTTTGTTCAGCAATGCTTATATGCGTTGTGTTTCTACTTGTAGGGTTTGTTGGAGTCTTGTAATCATGATTGTTTGCTTTTAATTGACAATATGCATATGCATACTTCTGAGTTGGA

Fln Alignment:

sp_v1.1_unigene7904___MALVVKAKYNTSLRRFNVLPMEDGSLDLSLAGLRSKICELFQFNPSAQFVITYVDEDNDIVTMADDNDLLDVLNQGLNPLRLEVSLMSQNNRATEKQAQSQPSTPRNFSITKEQGQAFDLRSICSEETLKLLPEPLRKAILKCTKETANLASTAAVAELIEGVVKLVSTHLGPLMERXXXXXXXXXXXPNSTVPFINVSAEQGTGNAQPTSGDRFIPSPQLPFGQVHGFGLKGNQCLGENLHRTFHKGVQCDGCGMHPIIGPRYKSLVKDDYDLCQSCFSDVGNEEEYMKLDRALYRPPALYRSPHKERSFHRGRHFHKSPVFYPSKCPAFTPPPGCNLWNSPTSIYCSQGPSAGKPANKAPGKLDCRFVQDVTIFDGTQFAPGTPFTKIWRLRNNGTLKWPHQTQXXXXXXXXXXXXXXXXXEIQEEGYEVDEELDAAVDFLAPIQPGRYVSYWRLVAPSGQKFGQRVWVLIQVVPPR-EECLPDLMDSLLTLNDVXXXXXXXXXXXXKT--VDGSSQDTSERACLGDSKMDLDPNELGCSSMVAEKGKQPSSLVEVGNAFTQSQRVDFPTEMQGGSSINVEVMPSDLGADYPSPAKSVPLPVHDVSRGHIAVSASAPSLVGSESFFAGKVTE-----EQTLLRELEDMGFNQRMLNAELLRKHNYDLQKTLDDLCSAAEWDPILEELQEMGFHDSEMNRTLLVKNDGSVKRVVLDLLSAEKDASSMQFNLSKKAKQS
C0PPV6______________MALVIKVKYNTALRRFNVSAREDGSLDLSLAGLRSKICELFQLNPYAQFVITYIDEDNDVVTMADENDLLDVLNQGLNPLRLEVSLVSQNNRATEKQPQSQPSTPRNFSIPKEQGQGFDLRSICSDETLNLLPEPLRRAMLKCTKESLDLTSTPVVAELIEGVIKLASTHLGPLMERQQTAGAGSDTQPNNTVPFLNVPAEQGTGNAHPTLGDRFAPSP-FPVGVVHGFGLKGNHGFSENMHRTFHKGVQCDGCGMHPIIGPRYKSLVKDDYDLCQSCFSDTGNEEEYMRLDRALYRPPALYRPPHKERSFHGRRHFHKSPGFYPSKCPAFAPPPVCHPWSSPISMYNPQAPSAGKSASKAPGKLDCRFVQDVTIFDGTQLAPGTPFTKIWRLRNNGTLKWPNQTQLVRVGGDDLGAGDAVNLEIQEEGYQVDEELDAAVDFLAPIQPGRYVSYWRLMAPSGQKFGQRVWVLIQVVPPRDEDSLPDLMDSLLTFKEVEQNNLSQGQTKQNTADVDVSSQDTSEKPCLGDNKMDLDPNEPGFLSTVTDKGKQPSPLIEVGNAFPQSQRVDVPTEVQGSSSMIFEVTPPALGAGYSSPAQSVPLPVLDLSRGHIAVSASAPSLVGSETFFVGKETEDRNAVEQTLLHELEDMGFNQTMLNAELLRKHNYDLQKTLDDLCSASEWDPILEELQEMGFHDSEMNRTLLVKNEGSVKRVVLDLLSAEKDASSMQPTLSKKAKQS

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
65		12	87		0.992554
68	75		12		0.975346
69			85	14	0.993533
70	85	14			0.993533
71	85	14			0.993533
75			85	14	0.993533
77	85		14		0.993533
81	85	14			0.993533
82	14			85	0.993533
419	10		90		0.90298
905	13		86		0.999973
1019	40			59	1.0
1382	10	90			0.999898
1749	93		6		0.999453
2473	96		3		0.986325
2531	94		5		0.997984
2787	66	33			1.0
2796		12		87	0.992554
2841		25		75	0.996473
2865	14	85			0.993533
2866	14			85	0.993533
2867	14	14		71	0.984337
2869		16		83	0.994512
2870	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain