SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7902

Length: 1760 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7902

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ataxin-3, putative; K11863 Ataxin-3 [EC:3.4.22.-]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	71%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Machado-Joseph disease protein MJD	IPR006155	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPV0

Fln msg: Overlapping hits, possible frame ERROR between 260 and 256, your sequence is longer than subject: 485 - 435

Fln protein: MVVRERFELWSPLQAKKRICGRYNIELPARVSHSKESKPYPTPITTHMATQEITNGGLLYHEVQESKLCAVHCVNTVLQGPxxxSEFDLASIAADLDHKEKQMMMEGGMESVDYLQYMAEGSSNVSMDGNFSIQVLEKALEIWDLHVIPLESPLAGQAQIDPQNEDGFICHLENHWFCIRKVGGEWYNFNSFYPAPEYLSKFYLSAYLDTLKGAGWSIFLVRGNFPRDCPVSSSETSNAYGQWLTPDDAQRITKSVAVTHNVSREKEKEPMSNILSTAEMTGGATSPINSSNNEESQLRAAIAASLGSQKVQSYYPDSFDRPFESLQNTLDYEDPELMAAIAASLKDSSTSGGGSSDNPFVAQSMQLLGQESELLPPVAANMEDSLPTTVTSGHTNDLQNEGTFTTTENKLPEKQDPASTTAMDIGMVENSSFSEDHTGNSQASHIAAPMLNVNSGHSNVSQLAAAMAASLANVQVPPRTDHPT*

Protein Length: 486

Fln nts: ATTGGGGATAA_-_ATGGTGGTGAGAGAACGTTTTGAACTCTGGAGTCCACTGCAAGCAAAGAAAAGAATATGTGGCAGGTATAACATAGAGTTACCAGCTAGGGTTTCACACAGTAAGGAATCGAAACCATATCCAACTCCCATTACCACGCATATGGCCACCCAGGAAATCACCAATGGAGGATTGCTGTACCACGAGGTACAGGAATCCAAGCTCTGTGCAGTCCATTGTGTGAACACTGTGTTGCAAGGACCGxxxxxxxxxTCGGAGTTTGATCTTGCGAGCATTGCAGCAGATTTGGACCACAAGGAAAAGCAGATGATGATGGAAGGAGGGATGGAATCGGTAGATTACCTGCAATATATGGCGGAGGGCTCGTCAAATGTCTCCATGGATGGAAATTTCAGTATACAGGTTTTGGAGAAGGCTCTAGAAATTTGGGACCTTCATGTAATTCCACTGGAATCACCGTTGGCAGGGCAAGCCCAGATAGATCCTCAGAATGAAGATGGTTTTATTTGTCATCTTGAGAATCACTGGTTCTGTATCAGGAAAGTAGGTGGAGAGTGGTACAATTTCAATAGCTTCTATCCTGCTCCTGAATATCTCTCCAAGTTCTACCTTTCTGCCTACTTGGATACACTTAAAGGTGCGGGCTGGAGCATCTTCCTTGTTAGAGGCAATTTTCCAAGGGATTGCCCTGTCTCCAGTTCTGAAACTAGTAATGCTTATGGACAATGGCTGACTCCTGATGACGCACAGAGGATCACCAAATCCGTGGCAGTGACACACAATGTCTCTCGTGAAAAGGAAAAAGAGCCCATGTCAAATATATTGTCTACTGCTGAGATGACAGGTGGGGCAACTTCACCCATTAATAGCTCCAATAATGAAGAGTCTCAGTTGAGGGCTGCTATAGCTGCTAGCCTGGGGAGCCAGAAAGTTCAGAGTTACTATCCGGATTCATTTGACAGACCCTTCGAATCTTTGCAAAATACATTAGATTACGAAGATCCAGAATTGATGGCTGCTATTGCAGCTAGTTTGAAGGACTCTTCTACCTCAGGTGGTGGAAGTTCTGATAATCCATTTGTAGCTCAATCAATGCAATTGCTGGGACAAGAGTCAGAATTGTTGCCTCCTGTTGCAGCTAATATGGAGGATTCTCTGCCAACCACAGTCACCTCTGGGCACACAAATGATTTACAAAATGAAGGCACGTTTACTACTACAGAAAATAAATTGCCAGAGAAACAAGATCCAGCCTCCACAACCGCGATGGATATTGGCATGGTGGAGAACTCATCCTTCTCCGAGGATCATACAGGCAACAGTCAGGCATCTCACATTGCAGCTCCGATGCTCAATGTGAACTCTGGCCATTCAAATGTTTCTCAGTTAGCAGCTGCAATGGCGGCAAGCCTAGCTAATGTTCAAGTACCTCCGCGAACAGATCATCCCACATGA___CCAGGGATAAGCAGAGATTTCAAATCCAGAGGTTGATTGCACTGGCAACTTTATGCTAGGCAGATTGACTCTGATTTGATCATAAATATATTGTATTTCCCTTAAAAGACACATCCTTATTCATGGATTACTTGGAATTACTAAAAGATTGTGGCCGGAGAGAAAAATTTGCTAGAATAATTTTGGATATTTGTTTTGAATCATCATGCGGCAGGGGGCTTGCTGTCTCTTCCACAGATTTTCAATGTTAAATTAGTGCACATCAGGAAGTTCAACTACATTTTAGGTTATGTCTA

Fln Alignment:

sp_v1.1_unigene7902___MATQEITNGGLLYHEVQESKLCAVHCVNTVLQGPxxSEFDLASIAADLDHKEKQXXXXXXXXSVDYLQYMAEGSSNVSMDGNFSIQVLEKALEIWDLHVIPLESPLAGQAQIDPQNEDGFICHLENHWFCIRKVGGEWYNFNSFYPAPEYLSKFYLSAYLDTLKGAGWSIFLVRGNFPRDCPVSSSETSNAYGQWLTPDDAQRITKSVAVTHNVSREKEKEPMSNILSTAEMTGGATSPINSSNNEESQLRAAIAASLGSQKVQSYYPDSFDRPFESLQNTLDYEDPELMAAIAASLKDXXXXXXXXXDNPFVAQSMQLLGQESELLPPVAANMEDSLPTTVTSGHTNDLQNEGTFTTTENKLPEKQDPASTTAMDIGMVENSSFSEDHTGNSQASHIAAPMLNVNSGHXXXXXXXXXXXXXXXXXXXPPRTDHPT
B8LPV0______________MATQEITNGGLLYHEVQESKLCAVHCVNTVLQGPxxSEFDLATIAGDLDHKEKQMMMEGGMESVDYLQYMAEGSSNVSMDGNFSIQVLEKALEIWDLHVIPLESPLAGQAQIDPQNEDGFICHLENHWFCIRKVGGEWYNFNSFYPAPEHLSKFYLSAYLDTLKGAGWSIFLVRGNFPRDCPVSSSETSNAYGQWFTPDDAQRITKSMAITHNASHEKEKESISNISSTAEVKGGTTSPIDSSNYEDSQLRAAIAASLGSQKVQSYYPDSFVRPFDCMQNTLDYEDPELMAAIAASLKDSSTSGSGNSDNLFVAPSMQLLGQESQLLPPVAANTEDSLPTSITSGQTSGLQNEGTLPTTDDNLPEKQEPTSTTAMDIG-VENSSLSQDHTGNSQASHIAAPMLNVNSGHSNVSQLAAAMAASLANVQVPPRTDRQT

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
72			87	12	0.992554
159	75		25		1.0
253		66		33	1.0
269		20		80	0.995493
516	33			66	0.997452
519			33	66	0.997452
554	11			88	0.923564
1012		83	16		0.994512
1013		83	16		0.994512
1023			63	36	1.0
1194	92			7	0.999532
1195	92	7			0.999532
1226		88	11		1.0
1368	10		89		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain