SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7894

Length: 2691 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7894
CGTCGTGACCTTGGCTGTCACTCAATCATTTGCATTGCATATCTCTGAGATATTTGAATGCTTAAGTTTGTGCCTTTGTTCGGTTTGGTTCAGTAATTTATTGTAGGCTTTGATTATCAGGAAGCGTACGCGTTTAAGATAAATATGGCGGATAATGGAAGTTTTAGTTCGGCCTACGAGAACTCTGCTGGGAACGGTTTAGCAAAAATCCAGACGCAGAAGAAGCATAATGGGATCTGCCACGATGATAGTACTACTCCTGTGAAGGCGCAGACTCTGGACGAGCTCCATTCGTTGCAAAAGAAGAAATCTGCGCCTTCAACTCCCATTAAAGGAGCTCAGGGGGCGTTTGCTGCTCAACTGTCCGAGGACGAAAGACAGAAGCAGCAGCTGAAGTCCATCAGTGCTTCTCTGGCATCTCTTACCAGGGAAACTGGCCCCAAGGTTCTGAGGGGAGATCCTACTAGGAAGGTGGAGGCTTTGAAGCCAGCAACCGATATTTCAAGCACTGTGCCTACGCCTAAATTTACAACTAGCGACAGTGCTTTGAAGTTTACACATATTCTACACAACCTTTCAGCAGCTGAGCTGTACGAACAGGCCATTAAATATGAGAAAGGTTCATTCATTACATCGACTGGTGCTCTGGCAACGCTTTCGGGGGCCAAAACCGGACGCTCTCCCAGAGATAAGCGTGTTGTTAAGGATGAGTCGACCGAGGCTGAACTATGGTGGGGCAAGGGATCTCCGAATATTGAGTATGGATGAGCATACATTCCTGGTCAACAGAGAAAGGGCCGTAGATTATCTCAATTCTTTGGAGAAGGTCTTTGTGAATGACCAGTTCCTGAACTGGGATCCTGAGCACCGAATCAAAGTCAGAATTGTCTCAGCGCGAGCATATCACGCTCTCTTCATGCACAACATGTGTATCCGACCCACCCCTGAAGAGCTGGAGGACTTTGGCACTCCGGACTTCACGATATACAATGCTGGCCAATTCCCTTGTAATCGATACACTCACTACATGACATCCTCCACCAGCATAGACCTTAATCTCCGTAGGAGAGAAATGGTTATTTTGGGTACACAATATGCGGGAGAAATGAAGAAGGGTTTGTTCAGCGTGATGCACTATCTTATGCCAAAGAGACAAATTCTTTCCCTCCATTCTGGCTGCAATATGGGAAAGGACGGGGATGTCGCCCTGTTTTTTGGATTATCAGGTATTGTGAATCAAACACGAGAGCTGCAAATCTCGTGAGATTCACAGAGTGTGTACTTTTTTTCTGCCTCAGGGCAAACACATTCATCCAAATTTCACGCACTGCTGACGCTTCAATATTTGGATTATCAGGTACTGGTAAGACCACTCTATCAACAGATCATAACAGGTTCCTGATCGGAGATGATGAACACTGTTGGAGTGAAAATGGCGTGTCTAATATTGAAGGAGGTTGTTATGCCAAATGTATAGATCTCTCGCGGGAAAAGGAGCCTGACATCTGGAACGCCATCAAGTTCGGCACTGTGTTGGAAAACGTGGTATTTGACGAGCACACCAGAGAAGTTGATTATGCTGACAAATCAGTCACAGAGAATACAAGGGCATCCTATCCGATCGAATATATACCCAACGCAAAGATACCCTGCGTGGGCCCTCATCCCAAAAATGTGATATTGCTCGCATGCGACGCCTTCGGCGTTTTGCCACCAGTTAGCAAACTGACTCTGCCCCAGACGATGTACCACTTTATCAGTGGATACACAGCCCTGGTAGCAGGCACAGAGGAAGGCATAAAAGAGCCTCAAGCTACGTTTTCTGCTTGTTTCGGCGCTGCTTTCATTATGCTACATCCTACAAGGTATGCAGCCATGCTGGCTGAGAAAATGCAGAAGCACGGCGCAACAGGATGGCTCGTCAACACCGGCTGGTCCAGCGGCAGCTATGGCGTGGGGCGAAGAATAAAGTTGCAGTACACGAGAAAGATCATTGATGCCATTCACGCCGGCTCCCTTTTGAAAGCCAAGTACTCAAAAACCGATGTATTCGGACTGGAAATCCCAGATGCTATTGATGGCGTACCCTCTGAGATTCTTCATCCAGAAAATACGTGGCCTGACAAGACCGCATACAGAGAAACGCTGCTCAAACTAGCAGGTCTTTTCGGCAACAACTTTGAGAAGTTTACAAACTATAAAATCGGAAAGGACAGCAAGCTGACTGAGGAAATCCAGGCAGCAGGTCCTCAGATTTAGTCAGCAAGCTGACTCCTCAGATTTAGTCGTGTAGACGGTCCTCAGTTTTAGTCTTTAAATTATCTTCTGTGAATTATGAAGGATAGGTGGTAGTAATATATTGATTTAATGCAGCAATAGAGCGGAAGATGGGCACTTATATTTTAGGTCTTTTAGATCGATATTCGGCATTCTGTTTCAATGCCGAAGTATGGCTTTCAAGTAGATTTTTATTGAAGAATTAAGTGAGAGATTTTAACAGTACTTTACGATGTAATACGGATAGCAAAGTTATTTGGGCGGTACCCGTTGATATCAATGGCTACCAAAGTAGTGATCTGCCAAATGTCTATGATTTGGGTTGTATCTATCTTTCTCAATGGGGCGAGTAATGAGCTGCCAAATATTTATGAAAAAAAATAATAGTGATTTATACCCTTTGGAAGTTTGCGT

Ace file of the UniGene sp_v1.1_unigene7894

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoenolpyruvate carboxykinase n=3 Tax=Flaveria RepID=Q94LX8_FLATR	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	phosphoenolpyruvate carboxykinase	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	0.0	90%
Blast2go	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE68

Fln msg: Overlapping hits, possible frame ERROR between 759 and 755, your sequence is longer than subject: 374 - 263

Fln protein: MADNGSFSSAYENSAGNGLAKIQTQKKHNGICHDDSTTPVKAQTLDELHSLQKKKSAPSTPIKGAQGAFAAQLSEDERQKQQLKSISASLASLTRETGPKVLRGDPTRKVEALKPATDISSTVPTPKFTTSDSALKFTHILHNLSAAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRVVKDESTEAELWWGKGSPNxxxMDEHTFLVNRERAVDYLNSLEKVFVNDQFLNWDPEHRIKVRIVSARAYHALFMHNMCIRPTPEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLRRREMVILGTQYAGEMKKGLFSVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGIVNQTRELQIS*

Protein Length: 375

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATTTGCATTGCATATCTCTGAGATATTTGAATGCTTAAGTTTGTGCCTTTGTTCGGTTTGGTTCAGTAATTTATTGTAGGCTTTGATTATCAGGAAGCGTACGCGTTTAAGATAAAT_-_ATGGCGGATAATGGAAGTTTTAGTTCGGCCTACGAGAACTCTGCTGGGAACGGTTTAGCAAAAATCCAGACGCAGAAGAAGCATAATGGGATCTGCCACGATGATAGTACTACTCCTGTGAAGGCGCAGACTCTGGACGAGCTCCATTCGTTGCAAAAGAAGAAATCTGCGCCTTCAACTCCCATTAAAGGAGCTCAGGGGGCGTTTGCTGCTCAACTGTCCGAGGACGAAAGACAGAAGCAGCAGCTGAAGTCCATCAGTGCTTCTCTGGCATCTCTTACCAGGGAAACTGGCCCCAAGGTTCTGAGGGGAGATCCTACTAGGAAGGTGGAGGCTTTGAAGCCAGCAACCGATATTTCAAGCACTGTGCCTACGCCTAAATTTACAACTAGCGACAGTGCTTTGAAGTTTACACATATTCTACACAACCTTTCAGCAGCTGAGCTGTACGAACAGGCCATTAAATATGAGAAAGGTTCATTCATTACATCGACTGGTGCTCTGGCAACGCTTTCGGGGGCCAAAACCGGACGCTCTCCCAGAGATAAGCGTGTTGTTAAGGATGAGTCGACCGAGGCTGAACTATGGTGGGGCAAGGGATCTCCGAATxxxxxxxxxATGGATGAGCATACATTCCTGGTCAACAGAGAAAGGGCCGTAGATTATCTCAATTCTTTGGAGAAGGTCTTTGTGAATGACCAGTTCCTGAACTGGGATCCTGAGCACCGAATCAAAGTCAGAATTGTCTCAGCGCGAGCATATCACGCTCTCTTCATGCACAACATGTGTATCCGACCCACCCCTGAAGAGCTGGAGGACTTTGGCACTCCGGACTTCACGATATACAATGCTGGCCAATTCCCTTGTAATCGATACACTCACTACATGACATCCTCCACCAGCATAGACCTTAATCTCCGTAGGAGAGAAATGGTTATTTTGGGTACACAATATGCGGGAGAAATGAAGAAGGGTTTGTTCAGCGTGATGCACTATCTTATGCCAAAGAGACAAATTCTTTCCCTCCATTCTGGCTGCAATATGGGAAAGGACGGGGATGTCGCCCTGTTTTTTGGATTATCAGGTATTGTGAATCAAACACGAGAGCTGCAAATCTCGTGA___GATTCACAGAGTGTGTACTTTTTTTCTGCCTCAGGGCAAACACATTCATCCAAATTTCACGCACTGCTGACGCTTCAATATTTGGATTATCAGGTACTGGTAAGACCACTCTATCAACAGATCATAACAGGTTCCTGATCGGAGATGATGAACACTGTTGGAGTGAAAATGGCGTGTCTAATATTGAAGGAGGTTGTTATGCCAAATGTATAGATCTCTCGCGGGAAAAGGAGCCTGACATCTGGAACGCCATCAAGTTCGGCACTGTGTTGGAAAACGTGGTATTTGACGAGCACACCAGAGAAGTTGATTATGCTGACAAATCAGTCACAGAGAATACAAGGGCATCCTATCCGATCGAATATATACCCAACGCAAAGATACCCTGCGTGGGCCCTCATCCCAAAAATGTGATATTGCTCGCATGCGACGCCTTCGGCGTTTTGCCACCAGTTAGCAAACTGACTCTGCCCCAGACGATGTACCACTTTATCAGTGGATACACAGCCCTGGTAGCAGGCACAGAGGAAGGCATAAAAGAGCCTCAAGCTACGTTTTCTGCTTGTTTCGGCGCTGCTTTCATTATGCTACATCCTACAAGGTATGCAGCCATGCTGGCTGAGAAAATGCAGAAGCACGGCGCAACAGGATGGCTCGTCAACACCGGCTGGTCCAGCGGCAGCTATGGCGTGGGGCGAAGAATAAAGTTGCAGTACACGAGAAAGATCATTGATGCCATTCACGCCGGCTCCCTTTTGAAAGCCAAGTACTCAAAAACCGATGTATTCGGACTGGAAATCCCAGATGCTATTGATGGCGTACCCTCTGAGATTCTTCATCCAGAAAATACGTGGCCTGACAAGACCGCATACAGAGAAACGCTGCTCAAACTAGCAGGTCTTTTCGGCAACAACTTTGAGAAGTTTACAAACTATAAAATCGGAAAGGACAGCAAGCTGACTGAGGAAATCCAGGCAGCAGGTCCTCAGATTTAGTCAGCAAGCTGACTCCTCAGATTTAGTCGTGTAGACGGTCCTCAGTTTTAGTCTTTAAATTATCTTCTGTGAATTATGAAGGATAGGTGGTAGTAATATATTGATTTAATGCAGCAATAGAGCGGAAGATGGGCACTTATATTTTAGGTCTTTTAGATCGATATTCGGCATTCTGTTTCAATGCCGAAGTATGGCTTTCAAGTAGATTTTTATTGAAGAATTAAGTGAGAGATTTTAACAGTACTTTACGATGTAATACGGATAGCAAAGTTATTTGGGCGGTACCCGTTGATATCAATGGCTACCAAAGTAGTGATCTGCCAAATGTCTATGATTTGGGTTGTATCTATCTTTCTCAATGGGGCGAGTAATGAGCTGCCAAATATTTATGAAAAAAAATAATAGTGATTTATACCCTTTGGAAGTTTGCGT

Fln Alignment:

sp_v1.1_unigene7894___MADNGSFSSAYENSAGNGLAKIQTQKKHNGICHDDSTTPVKAQTLDELHSLQKKKSAPSTPIKGAQGAFAAQLSEDERQKQQLKSISASLASLTRETGPKVLRGDPTRKVEALKPATDISSTVPTPKFTTSDSALKFTHILHNLSAAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRVVKDESTEAELWWGKGSPNxxMDEHTFLVNRERAVDYLNSLEKVFVNDQFLNWDPEHRIKVRIVSARAYHALFMHNM
D5AE68______________MADNGDFTFANERSAGNGLARIQTQKKQNGICHDDSAPPVKAQTLDELHSLQKKKSAPSTPNKGAQLGFAAQLSEEERQKQQMQSISASLASLTRETGPKVLRGDPSKKVEASKPAAEFPSSEPTAKFTTSDSSLKFTHILHNLSAAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRVVLDETTDDELWWGKGSPNxxMDEHTFLVNRERAVDYLNSLEKVFVNDQFLNWDPEHRLKVRIVSARAYHALFMHNM

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
768	75	25			0.996473
772	75		25		0.996473
777	75	25			0.996473
781		75	25		0.996473
919		40		60	1.0
965		15		84	0.999986
971	84			15	0.999986
972		84	15		0.999986
976			84	15	0.999986
977		15	84		0.999986
1009		46		53	1.0
1093	46		53		1.0
1102		50	50		1.0
1127	50		50		1.0
1150	50		50		1.0
1171		57	42		1.0
1207		75	25		0.996473
1211		50		50	1.0
1242	80		20		0.995493
1244	80	20			0.995493
1252	20		80		0.995493
1276	25		75		0.996473
1285		66		33	0.997452
1363			80	20	0.995493
1393		83	16		0.994512
1394	83		16		0.994512
1395			16	83	0.994512
1737	14	85			0.993533
1738	14			85	0.993533
1756		80		20	0.995493
1787			83	16	0.994512
1788		83	16		0.994512
1908	85		14		0.993533
1916	87			12	0.992554
1917		87	12		0.992554
1918	85		14		0.993533
2489	70		29		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain