SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7889

Length: 1271 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7889

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MYBR domain class transcription factor n=2 Tax=Malus x domestica RepID=D9ZJ78_MALDO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	dna binding	-	-	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKB7

Fln msg: your sequence is shorter than subject: 250 - 270

Fln protein: DHLEDTKDRWEKIALAVPGKSPAEVQRHYEILVEDIASIEAGRVPIPCYVDEVAEQAADNGSAKKGGTHSSVYANLASENNGTGKGSSKSDQERRKGIPWTEEEHKMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNGSDVSSPQGPITGQGNQSSGSAGQSANHGSQPGLPSVYGATVGQPIAGPMVSAVGTPVMLPPGHAPYVVPVAYPMPQPPTMHR*

Protein Length: 251

Fln nts: GACCATTTGGAGGATACAAAAGATAGGTGGGAAAAAATAGCCTTGGCGGTGCCGGGAAAAAGCCCTGCTGAGGTCCAACGGCATTACGAAATCCTTGTAGAGGACATTGCCTCCATTGAAGCTGGTCGTGTGCCTATTCCATGCTATGTGGATGAAGTTGCAGAGCAAGCTGCTGATAATGGAAGCGCCAAGAAAGGGGGAACCCATTCTTCTGTTTATGCGAATCTGGCATCTGAAAATAATGGAACGGGAAAGGGGAGCTCCAAATCCGACCAGGAACGTCGCAAGGGAATTCCATGGACCGAAGAAGAACACAAGATGTTCTTGCTTGGTCTGGAAAAATTTGGCAAAGGTGACTGGAGGAGCATCTCAAGGAATTTTGTTATTTCTCGAACTCCCACACAGGTGGCTAGTCATGCACAAAAGTATTTTATTCGGTTGAATTCGATGAACAGGGACAGAAGACGATCTAGCATTCATGATATTACTAGTGTGAATGGGAGTGATGTATCATCACCACAGGGACCTATAACTGGTCAAGGAAATCAATCTTCAGGATCTGCAGGGCAATCTGCTAATCATGGTTCTCAGCCAGGGCTTCCTAGTGTATACGGAGCTACTGTTGGTCAGCCCATTGCTGGGCCTATGGTTTCTGCTGTTGGCACTCCTGTAATGCTTCCTCCGGGACATGCTCCTTATGTTGTTCCAGTTGCTTACCCTATGCCACAGCCGCCAACTATGCATAGATAA___CTAGAGAGAAGGAGCTGAACACTTTGGACTGCAAAGCTTCATTTGATAATATGTTTGTTGTCATCGTATCAATAGGAAATGATGCATGTCAACTGATCTTCTAAATGCTGATCAGTTGGTGTGTCATTGCTCAATATGCACCTTTTCCTGTGTGGTATGAAAGAGATCATTTTCTTCCTCCACTAAAGTTGCCAAAGTGGAGGACGTTAATTTTCTTGCAAAGAATGATTTTGATGGTTGCAAAGAATGATTTTGATTGGGAGACATGTAAGAAAAAACTCAGAGTTGCTATTCTTTTATTATTTCCTTTCTTCAGTCAAAATCAGAAAAGAGGAAGCCTCTGGATACAGCTAGCAATATTATATGATAACTGTTACCATTTGGCGCAGAATACACAAAGATGGAGATTTCAATAACGTTGCTCTGTTTAGCATCAGCATGATTTAGGATGCTTTGTGCAGATTATTGGCCAGATATGTTTGTGTGCTTCTTATGGGTAGGAAATTAAATGCCATTTGTCT

Fln Alignment:

sp_v1.1_unigene7889___HLEDTKDRWEKIALAVPGKSPAEVQRHYEILVEDIASIEAGRVPIPCYVDEVAEQAADNGSAKKGGTHSSVYANLASENNGTGKGSSKSDQERRKGIPWTEEEHKMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNGSDVSSPQGPITXXXXXXXXXXXXXXXXXXXPGLPSVYGATVGQPIAGPMVSAVGTPVML
B8LKB7______________HLEDTDDRWEKIASAVPGKSPAEVKRHYEILVEDIASIEAGRVPIPSYLDEVAEQA-DDGTAKKGGTHSSAYANLPSESNGTGKGTSKSDQERRKGIPWTEEEHRMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNGSDVSSPQGPITGQGNQSSGSAGQPANHVSQPGIPSVYGATVGQPIAGPMVSAVGTPVML

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
507		14		85	0.993533
708	80		20		0.999996
739	90		10		0.90298
745	90	10			0.90298
769	88		11		0.923564
779		88		11	0.923564
794		18		81	0.999994
798	81	18			0.999994
799	81		18		0.999994
802		20		80	0.999996
803		20	80		0.999996
806			20	80	0.999996
808		20		80	0.999996
992	80		20		0.999996
1016	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain