SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7887

Length: 2382 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7887
ACGTCGTGACCTTGGCTGTCATTCAATTTTCTTGTGGTGGTGGTTAAGAGTTGACAGGGTTTCGAAGTGCCGAGGAGTGTTAGATCGGTCCGGATGGAAGCTCTCAAATGACCCCATAATCCCAACGGACGGGATTCGAACCAGAACTGGACTGAATTCTCATCGCTTATTTTCGAAGCAAAGACTGGGTCATAATAATTTTCATGCAAGGAGGCTCTCCATGTGCTCCATTCTCACCGGTCTCTATCTTACAACAAAAGATGAACCCATCCATAAAAGGAGTGTCAGCTACTAAGCAGTCCTCTTTGAATCCAAATGCAGCAGAATTTGTTCCCTCAGCACTTAGAGCTGCACCTGGCAGTGCAAACAACACAGATGTATTCAAGTTAGAAGCTGCAGAGAGCTGTGGTAAAGCTGTCTTAAATAGAACTGAGTCAGCAACCTCTAGCACCTCCGATGATGAGACGAGGCAATACTGGCGTTTCAGGCTTCCTGACGACATTACACCAGATTTTGGACAGGATGCTTTGCAAGAGTCTGAGGGTTTTTTATCAGGAAGTTTGACTGGTCATGATTATCCACGTGCTTCCAAGTCTGAGGGTGTAATGGAAAGTGGGCAACTAGCTTTTGACAAGATGTGTCAAAGTGTTGATGTCAGTTTTACCAATGGCAAGTCTAAATTTGCATTTCCTCAGCATGTGGAAGGAAGATCTGGTAGTGGAATGGCACCTCTATCTGCTTCTAGTGGATGGGAGCAGCATATTATGGGTCATGATCAGCAGCTGGTGAAAAACAGAGATGGATATTTCAGTGCTGATGAATGTGATGTTGGGTTTTTGAATGAATTGGTAGGAGAACAAGCACTTTCAGACAATGGTGATGTCAATCCTGTGGAGCTTCTTGCTACAGAATTCCCAGGTTTTGCAGCTGAGAGTCTGGCAGACATATACTATGCAAATGGAGGTGATTTAAGCTTGACAATGGAGATGCTTACTCAACTTGAGCTTCAAGATGATGCTGGTTCACAGCAGTCCTTTCATACAAGGACACCGTCTGCTCCAAACCTTACTAGCATGGATTTTCCTGCACTGAGTTCAGAAATGTTAAATGGCCTGTCACAATATACAGACAGTGAAGTCCAACAAGCAGTGAACACACTTAGGAGGGAGGAGGCAGATAAGCTTTTTTTTGGTGGACGTAGTAATCTTGGTGGTTCTAGATCTGCTACTGACTTTGCTACAATTGTCAGGAAAAGCGCATCTGATTCTGGTCAGTGGAAATATGAGAAAAATGGTGCTGTGGATATAAATCTTGGGTCTAGTAGAAATGCTCAAGTTTCATCAGGTTCCTCTGCAGCGAATAACAGAGTGATCAATGGAGACAGACTACGGAGCTATACTAGTACTCGCCAGAATCAACAACTTTGGCTTGAAACTGGAGAAGCAGTAGCGAGTATGTATTCAAACCTGAGAGAAGAAGCTCGGGATCACGCTCGTGTTCGAAATGCATATTTTGAACAGGCTCGGCAAGCTTACGTGTCAGGTAATAAGGCTCTTGCAAAGGACTTGAGTGCAAAAGGGCAGTGGCACAATGGGCTAATGAAAGCTGCCCATCGTAAAGCCGGAGAAGCAATTTATCATCAAAGGAATGTAGGAACTACTCATATTCCAAACCTCATTCAAGGAGAGGATAGGTTGATTGATCTTCACGGTCTCCATGTTAATGAAGCCATACATGTATTAAAGAATGAACTTGCTGGTCTCCGTAATAAAGCAAGGTCTATTGGTCAGCGGCAACAGGTTTTAATTTGTGTTGGGACAGGACACCATACAAAGGGATCACGTACACCAGCAAGGTTGCCTGCTGCTGTTGAAAGGTACCTATTAGAGGACGAGCATCTTGATTACACTGAACCACAGCCAGGAATGTTACGAGTTTCTATATACTGACTAGAGATATTTGAGATGTGCAATATGGTCTCCCTTCCAAAGGCTTGCATAATTGTCATTTAGTGTATAGGAAGAGCAACAGGGATCTCGAGTCCTTTTCAATATCTGCCCGTGGAGATATATGTATCATGATCTGTATCTTTACTGTAACATTTACATCATTCAAGCAAATGATAGATGTTAGTTTTCAAATGTAACTTCCTATATGTGCCATAGACCGCAAACCACAGGAAGTGTGGCCTATTCAAAAAGCTTTTACCTTCCTGAAAGTGAGAAAACAAGTGACAAGGCTCTTGAATTTTTGGGTTGCCTGTTACAGAAAAGGATGGACTTCAGAATTTTAGCATTCACTAATTTTTTATTGAGTACTGTTCATTTATTAAGATTGTAATTAAACGAGCCAATTAATTTAACCGGGTACAGGGAATTTCAT

Ace file of the UniGene sp_v1.1_unigene7887

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	61%

Source	InterPros	Term	Type	Identity
Blast2go	Smr protein/MutS2 C-terminal	IPR002625	-	61%
Blast2go	Ataxin-2, C-terminal	IPR009818	-	61%
Blast2go	Domain of unknown function DUF1771	IPR013899	-	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKX6

Fln msg: your sequence is longer than subject: 582 - 462

Fln protein: MQGGSPCAPFSPVSILQQKMNPSIKGVSATKQSSLNPNAAEFVPSALRAAPGSANNTDVFKLEAAESCGKAVLNRTESATSSTSDDETRQYWRFRLPDDITPDFGQDALQESEGFLSGSLTGHDYPRASKSEGVMESGQLAFDKMCQSVDVSFTNGKSKFAFPQHVEGRSGSGMAPLSASSGWEQHIMGHDQQLVKNRDGYFSADECDVGFLNELVGEQALSDNGDVNPVELLATEFPGFAAESLADIYYANGGDLSLTMEMLTQLELQDDAGSQQSFHTRTPSAPNLTSMDFPALSSEMLNGLSQYTDSEVQQAVNTLRREEADKLFFGGRSNLGGSRSATDFATIVRKSASDSGQWKYEKNGAVDINLGSSRNAQVSSGSSAANNRVINGDRLRSYTSTRQNQQLWLETGEAVASMYSNLREEARDHARVRNAYFEQARQAYVSGNKALAKDLSAKGQWHNGLMKAAHRKAGEAIYHQRNVGTTHIPNLIQGEDRLIDLHGLHVNEAIHVLKNELAGLRNKARSIGQRQQVLICVGTGHHTKGSRTPARLPAAVERYLLEDEHLDYTEPQPGMLRVSIY*

Protein Length: 583

Fln nts: ACGTCGTGACCTTGGCTGTCATTCAATTTTCTTGTGGTGGTGGTTAAGAGTTGACAGGGTTTCGAAGTGCCGAGGAGTGTTAGATCGGTCCGGATGGAAGCTCTCAAATGACCCCATAATCCCAACGGACGGGATTCGAACCAGAACTGGACTGAATTCTCATCGCTTATTTTCGAAGCAAAGACTGGGTCATAATAATTTTC_-_ATGCAAGGAGGCTCTCCATGTGCTCCATTCTCACCGGTCTCTATCTTACAACAAAAGATGAACCCATCCATAAAAGGAGTGTCAGCTACTAAGCAGTCCTCTTTGAATCCAAATGCAGCAGAATTTGTTCCCTCAGCACTTAGAGCTGCACCTGGCAGTGCAAACAACACAGATGTATTCAAGTTAGAAGCTGCAGAGAGCTGTGGTAAAGCTGTCTTAAATAGAACTGAGTCAGCAACCTCTAGCACCTCCGATGATGAGACGAGGCAATACTGGCGTTTCAGGCTTCCTGACGACATTACACCAGATTTTGGACAGGATGCTTTGCAAGAGTCTGAGGGTTTTTTATCAGGAAGTTTGACTGGTCATGATTATCCACGTGCTTCCAAGTCTGAGGGTGTAATGGAAAGTGGGCAACTAGCTTTTGACAAGATGTGTCAAAGTGTTGATGTCAGTTTTACCAATGGCAAGTCTAAATTTGCATTTCCTCAGCATGTGGAAGGAAGATCTGGTAGTGGAATGGCACCTCTATCTGCTTCTAGTGGATGGGAGCAGCATATTATGGGTCATGATCAGCAGCTGGTGAAAAACAGAGATGGATATTTCAGTGCTGATGAATGTGATGTTGGGTTTTTGAATGAATTGGTAGGAGAACAAGCACTTTCAGACAATGGTGATGTCAATCCTGTGGAGCTTCTTGCTACAGAATTCCCAGGTTTTGCAGCTGAGAGTCTGGCAGACATATACTATGCAAATGGAGGTGATTTAAGCTTGACAATGGAGATGCTTACTCAACTTGAGCTTCAAGATGATGCTGGTTCACAGCAGTCCTTTCATACAAGGACACCGTCTGCTCCAAACCTTACTAGCATGGATTTTCCTGCACTGAGTTCAGAAATGTTAAATGGCCTGTCACAATATACAGACAGTGAAGTCCAACAAGCAGTGAACACACTTAGGAGGGAGGAGGCAGATAAGCTTTTTTTTGGTGGACGTAGTAATCTTGGTGGTTCTAGATCTGCTACTGACTTTGCTACAATTGTCAGGAAAAGCGCATCTGATTCTGGTCAGTGGAAATATGAGAAAAATGGTGCTGTGGATATAAATCTTGGGTCTAGTAGAAATGCTCAAGTTTCATCAGGTTCCTCTGCAGCGAATAACAGAGTGATCAATGGAGACAGACTACGGAGCTATACTAGTACTCGCCAGAATCAACAACTTTGGCTTGAAACTGGAGAAGCAGTAGCGAGTATGTATTCAAACCTGAGAGAAGAAGCTCGGGATCACGCTCGTGTTCGAAATGCATATTTTGAACAGGCTCGGCAAGCTTACGTGTCAGGTAATAAGGCTCTTGCAAAGGACTTGAGTGCAAAAGGGCAGTGGCACAATGGGCTAATGAAAGCTGCCCATCGTAAAGCCGGAGAAGCAATTTATCATCAAAGGAATGTAGGAACTACTCATATTCCAAACCTCATTCAAGGAGAGGATAGGTTGATTGATCTTCACGGTCTCCATGTTAATGAAGCCATACATGTATTAAAGAATGAACTTGCTGGTCTCCGTAATAAAGCAAGGTCTATTGGTCAGCGGCAACAGGTTTTAATTTGTGTTGGGACAGGACACCATACAAAGGGATCACGTACACCAGCAAGGTTGCCTGCTGCTGTTGAAAGGTACCTATTAGAGGACGAGCATCTTGATTACACTGAACCACAGCCAGGAATGTTACGAGTTTCTATATACTGA___CTAGAGATATTTGAGATGTGCAATATGGTCTCCCTTCCAAAGGCTTGCATAATTGTCATTTAGTGTATAGGAAGAGCAACAGGGATCTCGAGTCCTTTTCAATATCTGCCCGTGGAGATATATGTATCATGATCTGTATCTTTACTGTAACATTTACATCATTCAAGCAAATGATAGATGTTAGTTTTCAAATGTAACTTCCTATATGTGCCATAGACCGCAAACCACAGGAAGTGTGGCCTATTCAAAAAGCTTTTACCTTCCTGAAAGTGAGAAAACAAGTGACAAGGCTCTTGAATTTTTGGGTTGCCTGTTACAGAAAAGGATGGACTTCAGAATTTTAGCATTCACTAATTTTTTATTGAGTACTGTTCATTTATTAAGATTGTAATTAAACGAGCCAATTAATTTAACCGGGTACAGGGAATTTCAT

Fln Alignment:

sp_v1.1_unigene7887___MQGGSPCAPFSPVSILQQKMNPSIKGVSATKQSSLNPNAAEFVPSALRAAPGSANNTDVFKLEAAESCGKAVLNRXXXXXXXXXXXXXRQYWRFRLPDDITPDFGQDALQESEGFLSGSLTGHDYPRASKSEGVMESGQLAFDKMCQSVDVSFTNGKSKFAFPQHVEGRSGSGMAPLSASSGWEQHIMGHDQQLVKNRDGYFSADECDVGFLNELVGEQALSDNGDVNPVELLATEFPGFAAESLADIYYANGGDLSLTMEMLTQLELQDDAGSQQSFHTRTPSAPNLTSMDFPALSSEMLNGLSQYTDSEVQQAVNTLRREEADKLFFGGRSNLGGSRSATDFATIVRKSASDSGQWKYEKNGAVDINLGSSRNAQVSSGSSAANNRVINGDRLRSYTSTRQNQQLWLETGEAVASMYSNLREEARDHARVRNAYFEQARQAYVSGNKALAKDLSAKG
B8LKX6______________MQGGSPCAPFSLVSILEQKMNSSIKGVSTTKLSSLNPNAAEFIPSALRAAPGSANNTDAFKVEAAESCGKAILNRTESATSSTSDDESRQYWRFRLPDDITPDFGEDALQDSEGFLSGSLTSHDYPR--KSEGVMESGQLVFDKMSQSVDVSFPNGKSKFAFPQHVEGRSGSGMTPLSASSGWEQHILGHDQQLVKNRDGYFSADECDVGFLNELVGEQALSDNGDINPVELLATEFPGFAAESLADIYYANGGDLSLTMEMLTQLELQDDAGSQQSFHSRTPSAPNLTSMDFPALSSEMLNGLSQYSDSEVQQAVNTYRRGEADKLFFGGRGISGSSRSATDFATVVRKNASDSVQWKYEKNGAVDINLGSSRNPQVSSGSSAVNSRVINGDRLRSYTSTRQNQQLWLETGEAVGSMYSDLREEARDHARVRNAYFEQARQAYLVGNKALAKELSAKG

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
71	16	66		16	0.988813
72			83	16	0.994512
73	66		33		1.0
76	83		16		0.994512
559	84		15		0.999986
715		10	90		0.90298
718	90	10			0.90298
719		11	88		0.923564
721			88	11	0.923564
723	88		11		0.923564
724	88	11			0.923564
727			88	11	0.923564
744			27	9	1.0
746	72	27			1.0
752		30		70	1.0
753		30	70		1.0
754			70	30	1.0
755			70	30	1.0
756	70		30		1.0
759	70			30	1.0
765	70	30			1.0
767		30		70	1.0
1260	25	75			0.996473
1437	80			20	0.995493
1438	80			20	0.995493
1443	80	20			0.995493
1918	14	85			1.0
2332	83		16		0.994512
2334	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain