SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7874

Length: 1666 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin family protein	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	nodulin family protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 342 - 626

Fln protein: ECKQQVPYVNWNEMLLSELEDEKPKGVDLLPEWERQKRLAQLQTQLLHAAAEGAVRIKRRKGPRRGEDFTLMQAMIKADFWLMFFSLAFGAGSGLTVIDNLGQMSQSMGYASGHIFVSMMSIWNFLGRVGGGYLSEIVARDYAYPRPATMAVAQITMAIGHILFAMGWSGSLYLGTLLVGLGYGAHWAIIPATASEIFGLKNFGVLYNFFIMANPVGSLIFSGLIAGTLYDWEAEKQHSRHRPMPRLSAMFFGISGGSLKGDESLDCHGRSCFFLTYWIMSAVCIVAAVLSMIIVYRTRTVYKNLYGKNLNSGEGSFRKEKDLPKGEASSSDLRRSVSKNG*

Protein Length: 343

Fln nts: GAGAATGTAAGCAACAGGTTCCATATGTGAACTGGAACGAAATGCTATTGAGTGAGCTTGAAGATGAAAAGCCTAAAGGAGTCGATCTTCTGCCAGAGTGGGAGAGACAGAAACGCCTTGCTCAATTGCAGACCCAATTGTTGCATGCTGCTGCTGAAGGAGCTGTGAGGATTAAGAGAAGGAAGGGGCCTCGCAGGGGAGAAGATTTCACTCTGATGCAGGCCATGATTAAAGCTGATTTTTGGCTCATGTTCTTTTCTCTAGCCTTTGGAGCAGGTTCAGGCTTAACAGTTATTGACAACCTTGGGCAGATGAGCCAGTCAATGGGCTATGCAAGTGGTCATATATTTGTGTCCATGATGAGCATTTGGAACTTCCTTGGGCGTGTTGGTGGTGGATATCTCTCCGAGATTGTTGCAAGGGATTATGCATACCCCCGACCTGCAACTATGGCAGTAGCACAGATCACAATGGCCATTGGTCACATTCTCTTTGCAATGGGCTGGTCAGGATCATTATACTTAGGGACATTGCTTGTTGGTTTGGGCTATGGTGCTCACTGGGCTATCATCCCAGCCACTGCTTCTGAAATCTTTGGGCTGAAAAATTTTGGCGTGCTATACAATTTTTTCATCATGGCTAATCCGGTAGGGTCTTTAATCTTTTCTGGACTTATTGCCGGTACACTCTATGATTGGGAAGCAGAAAAGCAGCACTCAAGACATAGACCTATGCCCAGATTATCAGCAATGTTTTTTGGCATATCTGGTGGGTCTCTTAAGGGAGATGAGTCCCTGGATTGCCATGGTCGTTCATGTTTTTTCCTCACTTATTGGATCATGTCAGCGGTGTGTATTGTTGCAGCAGTCCTGAGTATGATAATTGTTTATAGAACGAGGACTGTCTACAAAAATCTCTATGGAAAGAACTTGAATTCAGGAGAGGGATCTTTCAGGAAGGAGAAAGATTTGCCGAAAGGAGAAGCTTCGTCTAGTGACCTAAGACGCAGTGTTTCAAAGAATGGGTAG___CCTATTTTAAGCTCAAGCTTTCTCAGCTAAGGTCATGCAAGGGCTTACCTGGGCTTGAAGGGTTGATTTCGAAATTACTAGACATTCTCAATTGAAGGTCGAGCTTTTGACCCTATCATTTACCTGCCTTACTTTCTCATCATTTGGAGTTTTATAAGTTTATTGTTGACGCCTGATGGCGGGCCTTAAATGCTACAATTTGTTTGTTGGGGAAGGAGTGTTTAATTTGAACTTTAAACTGTCCTAGAATCGTTCTCATCACCAATGCTGGATTGTGAGTTGCTGGCAAGTTTGGAAGTGAGGAATAGGGCATGTGTCTTTGTTGCAGAACCTGGTGGTGCATTTATATATCAGACACCCATATAGCAGTTGTACCTACTGTCAATAAGTTTGTTTTCAAGGAGCTGAACAGCGACTGTGATTAATGCCTGCTTTCACCCTCTAAAAGAAAGCATTTCAAGTTTTAGCTTCTAGTTGTATTGCATATGAGATTTCTCACAACTTGGTAATTCTTATTTACCAAATAGAAAGCACTGTGCTGATGAAGTTTCCTGGCAGAGATTAATGAAAGCTTTGTATCATTTTTCTGGGCTATCTATATGTAAGCCGTTTCTCTTATAAATATTGGTAGTTAAGAT

Fln Alignment:

sp_v1.1_unigene7874___PRRGEDFTLMQAMIKADFWLMFFSLAFGAGSGLTVIDNLGQMSQSMGYASGHIFVSMMSIWNFLGRVGGGYLSEIVARDYAYPRPATMAVAQITMAIGHILFAMGWXXXXXXXXXXXXXXXXAHWAIIPATASEIFGLKNFGVLYNFFIMANPVGSLIFSGLIAGTLYDWEAEKQHS-RHRPMPRLSAMFFGISGGSLKGDESLDCHGRSCFFLTYWIMSAVCIVAAVLSMIIVYRTRTVYKNLY
B8LRH5______________PRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAMGFVDVSMFVSLISIWGFFGRIGAGSISEHFIRKAGVPRPVWMAASQLFMIVGYIFMAIGMPGSLYLGSIVVGVCYGVRLSISVPTASELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYP---VLLSGIYPSEL--EDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIH

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
869			66	33	0.997452
893	75		25		0.996473
1007		80		20	0.995493
1008			80	20	0.995493
1009		80	20		0.995493
1010	80		20		0.995493
1149		14		85	0.993533
1150			14	85	0.993533
1154		85	14		0.993533
1161	85		14		0.993533
1164	14			85	0.993533
1167	14			85	0.993533
1475	87			12	0.992554
1476	87		12		0.992554
1477	87		12		0.992554
1483		87		12	0.992554
1577			80	20	0.999996
1600	88			11	0.923564
1623			25	75	0.996473
1625	25			75	0.996473
1626	25	75			0.996473
1627	25			75	0.996473
1629	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain