SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7872

Length: 1461 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7872

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	mca1 (mid1-complementing activity 1)	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion import	GO:0070509	Biological Process	88%
Blast2go	mechanosensory behavior	GO:0007638	Biological Process	88%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	88%
Blast2go	integral to plasma membrane	GO:0005887	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR4

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 179 - 418

Fln protein: MRTALHWENLGDLANVAQLTGLDAVRLIALIVKAASSARMHKKNCRHFAQHLKLIGNLLEQLKITELKKYPETREPLEQLEDALRRSYVLVDSCQNRSYLYLLAMGWTIVTQFKQAQAEIDRYLKIIPLISLVDNHRVKDRLQAIEKDQREYTLDEEEEKVHDAILHPESSVLNSSMLR

Protein Length: 180

Fln nts: ATGGGAGTGTACTCGATTATTATGCTGTGAGACGGCAGAAAGAGGAACGCATTTCGAAGGAGCGAAGGTTTTAAAGCACGAAAATTTGAGTGCATTGTGGCGAAGGAGGCGGCGAAATGCAGCTGGAACGGAAGGGACTGTTTTTGAAAGGTAAGCCTCGGCTTCGAACCCTGTTAAATTTGCGCCGGAATCTTGAATCCGAGCGTGTTTAGAGCGCTAAATGCAAGGTTTTCAGAAACAGAGCTTAAAACGCTGCATAACAGGTGAATATAACCGCTCCGGGAAATCAATTTGGGGCACTGTTACTTTATTTTGTGAGTTTTGTGTCGGCACTGTAAATGCCAGCTACGATAAGTGAAAATTTGCCAGTTGTGGCTCTGAATAGTGAATTTTTATTTTAGATGCTGAGGATCAGAAGCTTAGAGTATATATATAAATAATAATGCGTGCCTTGGAAATGAAGAATGTATATTGAATGTGAGGGACGGCTCAGGCTAAAGATTTAAAGATTATGCTTTCGGTGCCCCGAGCCTTGGATTTCAGAAGCACTTTAGCTTATAATGGTACAGGATGGATGAGTGATGTTGTTTTGTAGTTATAACACGAGCGTAAAAGCCGTGAAGTGTTTAGAAGAAGGTAAAAGGAAGCGGTTGAAGGTCATTGTGGCTTAATGTTGTTTGATGCACATCCAAGTACATTGAAATTTTAAGATATTTGGCTGCAATTACAGAATTTTGCCACAATTGTCAAGGTGCACTGTATCCTGTGAAAATGCGCAGGATCGTTGGTTACTGTGCGACTATTTGACGGAAAGTGGAATAATTTGATGAAATGCAGGCTTATGCATAATTTTTTGGCCTTTCACGATCGGATAAGAGTGGCTAACTGAGAAATTGAAAGTTTTTGAAAGGATCTCATCATC_-_ATGAGGACGGCACTGCATTGGGAGAATCTGGGCGATCTAGCGAATGTCGCCCAGCTGACGGGACTTGACGCCGTGAGGCTGATCGCTCTGATCGTCAAAGCTGCCAGCAGTGCGCGGATGCATAAAAAGAACTGCCGTCACTTTGCACAGCACCTGAAGCTCATAGGGAACCTGCTGGAACAACTTAAGATTACGGAATTGAAGAAATATCCCGAAACCAGAGAGCCTCTGGAGCAGTTGGAAGATGCGCTGAGAAGGTCATATGTTCTTGTCGACAGTTGCCAAAATAGAAGCTATCTGTATTTGCTTGCGATGGGATGGACTATCGTAACCCAGTTCAAGCAAGCTCAAGCAGAAATTGACAGATATCTGAAGATCATTCCTCTCATTAGCCTCGTGGACAACCACAGAGTTAAGGACCGACTCCAGGCCATTGAGAAGGATCAGCGAGAATACACTCTAGATGAAGAAGAGGAGAAAGTTCATGATGCAATCTTACATCCAGAATCTTCAGTATTGAACTCTTCAATGTTGCGGAA

Fln Alignment:

sp_v1.1_unigene7872___MRTALHWENLGDLANVAQLTGLDAVRLIALIVKAASSARMHKKNCRHFAQHLKLIGNLLEQLKITELKKYPETREPLEQLEDALRRSYVLVDSCQNRSYLYLLAMGWTIVTQFKQAQAEIDRYLKIIPLISLVDNHRVKDRLQAIEKDQREYTLDEEEEKVHDAILHPESSVLNSSMLR
B8LLR4______________MRTALHWENVGDLANVTQLTGLNAVSLIALIVKAASNARMHKKNCRQFAQHLKLIGNLLEQLKATELKKYPETREPLEQLEDALRRSYVLVDSCQNRSYLYLLAMGWTIVNQFRQAHAEIDRYLKIVPLINLLDNHRVKDRLQAIEKDQREYTLDEEEEKVHDAILHPESSVLNSSMLR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
92		25		75	0.996473
96	16			83	0.994512
97			16	83	0.994512
102		83	16		0.994512
205	28	71			1.0
1161	33		66		1.0
1212	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain