SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7867

Length: 2275 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7867
CGTCGTGACCTTGGCTGTCACTCAATTTCAGTTGTTCTGATCTTGCATTCCGGATCTACATTTTTCTATTAATTTTTTCTACAGCGCATAATTCAGATCGATCAAAAAGAGCTCCATTTCACCATTTATTTTTGGCTTGGCGAAATTTCACGAGTCTTATGGGCAGACAATTCTGGCATCGAAACAGCTAGTCTACTTTCAAATGGACAAATAAACAAGCAAAGTCTCGTTCATTAAAACCGTGTGGTGTTCCTTTCTTGAGGAGTTTTCAATCGTCAACATTTCTGGGTTGAACTTCGAGGAGAAAAATGGGTGACTTCAACCTGGCATTAGTTATCATAGCAGCAGTGGTGTGTGTTGTTGTGTTTCTTTTCAATATTTACCTGCTTATTAATTATCAACACCCAGATGACATAAATCAAGCATATTTCCCGAAGCTAGTGGTGGTTCTGGGCCTTTCAGTGGCCGAAATTTCCATTCTCATGCTACCAGCAGATGTTGCAAATCGTCAAGCTTGTAATAATGCAATATACAATGGGGCCTGTAATTTAACACTTCCTATGAAGGATCTGTGGTTGGCAGTATATATCATTGATGTGGTGCTAGTATTTTTTGTCATACCATTTGCCATGTTTTACTATGAAGGTGATCAAGACAAGAGCTGTGGGAAGAGGGTTTTTAGTGCTTTGATGTGGGTCATTGTGACTGCTGTAGTTGTTGGTCTCACACTTGGCATTCTTTATGGCCTTGTTGGTAAAGTCGACTTTACTGTACGGAAGATTTCTTCTTCAACAACTAACTTTCCCAGCAGTTGGTCCAGTCTTTCACTTTCAAAAAATCATCCTTGTTTAGCAGGAACAAATGGCAATACAAATTTGTGTGATGCTTACACAGCTGGTGCATCATCAGAAACTACGTGGACCATGCGCACAACTTTTCCTGAATATGTTGTTGCTCTTGCTACAATTGTTGGATCAGTACTTTTTTCTATATTTGGTGGTGTAGGTATTACTTGTTTACCTTTGGGTCTTGTCTTCTCCTTTCTTCGTCGACCGAAAGCTATTATTACTCGTGCACAGTATATCAAGGAGGCCACTGAATTAGGGAAGCGAGCAAGAGAGGTAAAAGAGGCAGCTGCTGCACTTCAACGAGAAGAGAGAAGCGGTAGCAAAGGCAGAAAATGGCGGAAAAATGTAAAGGCAGTTGAGAAGGAGCTTCTTTTTCTAGAAGAAGATGTGAAGGCTTTGGAGGAAATGTATCCTCAGGGTGAAAAGGCAGAGGCATCATGGGCTTTAACAGTGCTTGGCTATTTAGCAAGATTGATACTTGGAATATTTGGGTTTATTGTTTCGGTGGCTTGGGTTGCGCACATTGTGTTATACATGTTGATCAATCCTCCAGTCTCTCCCTTCCTTAATGAGGTTTTCATCAAGCTAGATTCTGTTTGGGGGCTTCTTGGAACTGTAGCATTTGCTTTCTTTTGCTTCTACCTCCTCCTTGCTGTGATAGCAGGGGCAATGGTTCTTGGCTTAAGGCTTGTTTTTATAACAATTCATCCAATGAAGTGGGGTGGAACATTGATGAATTCTTTCCTTTTCAACGTTGGGCTCATTCTTCTCTGTTCAATCAGTGTCATCCAATTTTGTTCCACAGCCTTTGCTGTGTATGCACAAGCAACTGCTGCTCAGGAGATATTTGGTCACACTCTTGAATCCTTGCGTGGCATTAAATACCTTTACAAGTACAATGTGTTCCAAATAGTCTTTATTGTTTTGGCTGGTCTAACTTTGATCTATTATCTTGCTTTTGGTTGGAAAAAACGAAAACCAAGAGGAAGGCTACAGCTCGCTAGTTAAAATGTGCAGTTCTTGAGATATCCTGTATGATGGAAGTTGCATGTTATTCTGGAGATACACCTGCATGTCAGAATGCAGTGTGGGTATAATTGGCATAGATATCATTCATTTTTCCCTTTGGGCATCAGGTTTACTTGTGTATGTGAAGAAATTGTAATCTAGATTATTTGTGACAGTTGAATATACTATAATGATTGAGATTATTTGAGGACGTGCCAACAATTTCTTATGTAGGGTGAATTTGATGATTGGCTTTTATTTTTTTCCTCGTAATCTATCCAGAGTTTGCATTTAAACTCACGAAGGACTCATGCCTCAGTCTAGTGAGAACATTTGAATATATGTATATATGAGCTTTTTGTAAATGCAATATGGATATTGCTTATTGAAATACATGCATGCCAAGTTCGATGTGTGCG

Ace file of the UniGene sp_v1.1_unigene7867

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LMBR1 integral membrane family protein	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LMBR1-like membrane protein	IPR006876	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI3

Fln msg: your sequence is longer than subject: 516 - 157

Fln protein: MGDFNLALVIIAAVVCVVVFLFNIYLLINYQHPDDINQAYFPKLVVVLGLSVAEISILMLPADVANRQACNNAIYNGACNLTLPMKDLWLAVYIIDVVLVFFVIPFAMFYYEGDQDKSCGKRVFSALMWVIVTAVVVGLTLGILYGLVGKVDFTVRKISSSTTNFPSSWSSLSLSKNHPCLAGTNGNTNLCDAYTAGASSETTWTMRTTFPEYVVALATIVGSVLFSIFGGVGITCLPLGLVFSFLRRPKAIITRAQYIKEATELGKRAREVKEAAAALQREERSGSKGRKWRKNVKAVEKELLFLEEDVKALEEMYPQGEKAEASWALTVLGYLARLILGIFGFIVSVAWVAHIVLYMLINPPVSPFLNEVFIKLDSVWGLLGTVAFAFFCFYLLLAVIAGAMVLGLRLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQFCSTAFAVYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIVFIVLAGLTLIYYLAFGWKKRKPRGRLQLAS*

Protein Length: 517

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCAGTTGTTCTGATCTTGCATTCCGGATCTACATTTTTCTATTAATTTTTTCTACAGCGCATAATTCAGATCGATCAAAAAGAGCTCCATTTCACCATTTATTTTTGGCTTGGCGAAATTTCACGAGTCTTATGGGCAGACAATTCTGGCATCGAAACAGCTAGTCTACTTTCAAATGGACAAATAAACAAGCAAAGTCTCGTTCATTAAAACCGTGTGGTGTTCCTTTCTTGAGGAGTTTTCAATCGTCAACATTTCTGGGTTGAACTTCGAGGAGAAAA_-_ATGGGTGACTTCAACCTGGCATTAGTTATCATAGCAGCAGTGGTGTGTGTTGTTGTGTTTCTTTTCAATATTTACCTGCTTATTAATTATCAACACCCAGATGACATAAATCAAGCATATTTCCCGAAGCTAGTGGTGGTTCTGGGCCTTTCAGTGGCCGAAATTTCCATTCTCATGCTACCAGCAGATGTTGCAAATCGTCAAGCTTGTAATAATGCAATATACAATGGGGCCTGTAATTTAACACTTCCTATGAAGGATCTGTGGTTGGCAGTATATATCATTGATGTGGTGCTAGTATTTTTTGTCATACCATTTGCCATGTTTTACTATGAAGGTGATCAAGACAAGAGCTGTGGGAAGAGGGTTTTTAGTGCTTTGATGTGGGTCATTGTGACTGCTGTAGTTGTTGGTCTCACACTTGGCATTCTTTATGGCCTTGTTGGTAAAGTCGACTTTACTGTACGGAAGATTTCTTCTTCAACAACTAACTTTCCCAGCAGTTGGTCCAGTCTTTCACTTTCAAAAAATCATCCTTGTTTAGCAGGAACAAATGGCAATACAAATTTGTGTGATGCTTACACAGCTGGTGCATCATCAGAAACTACGTGGACCATGCGCACAACTTTTCCTGAATATGTTGTTGCTCTTGCTACAATTGTTGGATCAGTACTTTTTTCTATATTTGGTGGTGTAGGTATTACTTGTTTACCTTTGGGTCTTGTCTTCTCCTTTCTTCGTCGACCGAAAGCTATTATTACTCGTGCACAGTATATCAAGGAGGCCACTGAATTAGGGAAGCGAGCAAGAGAGGTAAAAGAGGCAGCTGCTGCACTTCAACGAGAAGAGAGAAGCGGTAGCAAAGGCAGAAAATGGCGGAAAAATGTAAAGGCAGTTGAGAAGGAGCTTCTTTTTCTAGAAGAAGATGTGAAGGCTTTGGAGGAAATGTATCCTCAGGGTGAAAAGGCAGAGGCATCATGGGCTTTAACAGTGCTTGGCTATTTAGCAAGATTGATACTTGGAATATTTGGGTTTATTGTTTCGGTGGCTTGGGTTGCGCACATTGTGTTATACATGTTGATCAATCCTCCAGTCTCTCCCTTCCTTAATGAGGTTTTCATCAAGCTAGATTCTGTTTGGGGGCTTCTTGGAACTGTAGCATTTGCTTTCTTTTGCTTCTACCTCCTCCTTGCTGTGATAGCAGGGGCAATGGTTCTTGGCTTAAGGCTTGTTTTTATAACAATTCATCCAATGAAGTGGGGTGGAACATTGATGAATTCTTTCCTTTTCAACGTTGGGCTCATTCTTCTCTGTTCAATCAGTGTCATCCAATTTTGTTCCACAGCCTTTGCTGTGTATGCACAAGCAACTGCTGCTCAGGAGATATTTGGTCACACTCTTGAATCCTTGCGTGGCATTAAATACCTTTACAAGTACAATGTGTTCCAAATAGTCTTTATTGTTTTGGCTGGTCTAACTTTGATCTATTATCTTGCTTTTGGTTGGAAAAAACGAAAACCAAGAGGAAGGCTACAGCTCGCTAGTTAA___AATGTGCAGTTCTTGAGATATCCTGTATGATGGAAGTTGCATGTTATTCTGGAGATACACCTGCATGTCAGAATGCAGTGTGGGTATAATTGGCATAGATATCATTCATTTTTCCCTTTGGGCATCAGGTTTACTTGTGTATGTGAAGAAATTGTAATCTAGATTATTTGTGACAGTTGAATATACTATAATGATTGAGATTATTTGAGGACGTGCCAACAATTTCTTATGTAGGGTGAATTTGATGATTGGCTTTTATTTTTTTCCTCGTAATCTATCCAGAGTTTGCATTTAAACTCACGAAGGACTCATGCCTCAGTCTAGTGAGAACATTTGAATATATGTATATATGAGCTTTTTGTAAATGCAATATGGATATTGCTTATTGAAATACATGCATGCCAAGTTCGATGTGTGCG

Fln Alignment:

sp_v1.1_unigene7867___MLINPPVSPFLNEVFIKLDSVWGLLGTVXXXXXXXXXXXXVIAGAMVLGLRLVFITIHPMKWGGTLMNSFLFNVGLILLCSISVIQFCSXXXXXXXXXXXXXEIFGHTLESLRGIKYLYKYNVFQIVFIVLAGLTLIYYLAFGWKKRKPRGRLQLAS
D5ABI3______________MLINPPVSPFLNEVFIKLDSVWGLLGTVAFAFFCFYLLLAVIAGAMVLGLRLVFITIHPMKWGGTLMNSFLFNVALILLCSISVIQFCSTAFAVYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIVFIVLAGLTLIYYLAFGWKKRKTRGRLQLAS

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
167	87		12		0.992554
247	27		72		1.0
248		27		72	1.0
249		27	72		1.0
252		72	27		1.0
255			27	72	1.0
258		30		70	1.0
260		30	70		1.0
298		14		85	0.993533
345			87	12	0.992554
346		87	12		0.992554
347	87		12		0.992554
676	10			90	0.90298
679		10		90	0.90298
680			10	90	0.90298
686	11			88	0.923564
687			11	88	0.923564
693		11		88	0.923564
694	11		88		0.923564
697		11		88	0.923564
746		85		14	0.993533
754	11		88		0.923564
756	87	12			0.992554
857	83		16		0.994512
896		12		87	0.992554
985		12		87	0.992554
1332	83		16		0.999991
1371	90		10		0.90298
1373		10		90	0.90298
1377	10			90	0.90298
1378		10		90	0.90298
1379	88	11			0.923564
1381	88			11	0.923564
1382		88	11		0.923564
1383	88		11		0.923564
1387		11		88	0.923564
1388	11		88		0.923564
1389	88	11			0.923564
1965	2			88	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain