SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7861

Length: 2357 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7861
CGTCGTGACCTTGGCTGTCACTCAGTTGGTTTTTTCGATAATCATTGAGGGAATGTCGTACCTTTGTTGTTACCCATGAAATGAACTGAAACTTCAAGGATTTTGTTTGGTGGAAGTGTTTCACTCAGTGGCGGGGAAGTCGCTCGATATAAGTGGAAGTAGTAGCGGAAAGAGGAACGCTCAATTGATTCAACGGAAGCATAGAAAGCGGGGAGAGCAAACAGAGGCAAACAAAGGGAGAACAGAATTGATTTGGAATTGAAATTGGGTGAAGATGGATTGGGAAGAAAGCACGGAGGGGAACGTTGTGGGTGAGAGTAACAAGAAGAGTGTAATCAGCAGCGAGCAGATGGACGTGGAGGCTTATGGCTCTCTGTACAGCGGGAGGACAAAGATAACGCGTTTAATCTTCATCGCTGACCACTGCGGCAATGAGAGCATGAGGGTGGAGGCCCTGCGGATGGCCTACGATGAGATCAAGAAGGGCGACAACACCCAACTCTTCAAAGAGGTCGCCCACAAGATCGGTGGGAAGTTGGGTTCTGATTACTCCCTCGACCAAGACTGGATTGACTCAGTCGAACGCCGGGCTGAACAGCGCAAAGACAAGCTCGAGAATGAGCTAAATGGCTACAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCTGTTGTGGTTGCCAAGCTAAAATGTGCTGCAGGTCTAGCTCACCTCGAAAGCAAGAAATACAAGCTAGCTGCTCGCAAGTTTGTTGAGACAAACTTTGACCTAGGGAACAACTATACAGAAGTTATTGCTCCGCAGGATGTTGCAACTTATGGAGGACTTTGTGCACTTGCGTCCTTTGATAGATCAGAACTTAAGAATAAAGTTATAGACAATATCAATTTTCGAAATTTCTTGGAACTAGTGCCTGAAGTAAGGGAACTTATTCATGACTTCTATGCAAGCCGATATGCTTCATGCATAGAGTATCTGCAGAATCTCAAGGCAAACCTACTGCTTGATATACATCTACATGATCACGTGGAAACACTGTATGATCAGATTCGGCACAAAGCCCTTATCCAGTATACAACTCCTTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACTGGGGTGGAATTTGATAGGGATGCACGAGCAATGATGTTGCGGGCCAATATCATGAGGCATGATTTTATCTCAAGATCATCCAGGAGGATGTGACTTGGCATGATTATTTTTGCAAATTAATATTCTGTTGCATTTGACGATCTATACAAGCTTTGGGAATTCTGTAAATGTTGCAGGAATTGTTCTGATTTTTTAGTCTAAGAAATCTGTGTAAACATGCTTGATTGTGATCAATACGTTGGCAATTAGTGTTTTTTTTCTCCATTGCACCATTTATGTGGAGGTGCTATATATACTGTTTATAGCTTTTAAAGTTTTAATTTACCCCATATATTGAAATTGAAATGGGTATAGTACCTGAATAAGCTGCATTTGATCTGGATTCTTGAGTTGAACACCCTATGTCTTTTGATGACAATTTGAGGACATCTAATTTAGAGAGATTTCTTGAGGAATGCAGGGCTTTTTCCACGGATGGCGATTTAGGAGGTTGTTCGGTCCCAAGGTTTCCAAAGTCTGCTGGCCTGCTTAAGTTTTGAGTATTTACTTCTGATGCTCATTTCCCCAAGTCAAGATTGTTCACAGCGTTATTCATGAATGTTTCCAATAGGGAAATCAATTATTCTTCCAATGAACTGGTGAAGCCATGGTTCAGTTGATATCAGTCCTGTATTGTACTTGGTAATTTTGGAAATTTTATTTTTCAGTTAGAGCTCATCTTGGTAAAGACTGAGCAATAAGTGCTGACAAGAATGAGTTTATTCAAGGTGATTATGAGTTGATGCTTTGAGGATGCTGTTTCTTTCATTCTCTAATCATAATTTCGGTTTGGTTCTTTGTTAAACTGACTATTTTGTTTGAGAGGCACTATATA

Ace file of the UniGene sp_v1.1_unigene7861

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cop9 signalosome complex subunit, putative; K12175 COP9 signalosome complex subunit 1	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	fusca protein fus6	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	87%
Blast2go	response to absence of light	GO:0009646	Biological Process	87%
Blast2go	hyperosmotic response	GO:0006972	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	cullin deneddylation	GO:0010388	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	signalosome	GO:0008180	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome component (PCI) domain	IPR000717	-	87%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	87%
Blast2go	26S proteasome, regulatory subunit Rpn7	IPR019585	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC30

Fln msg:

Fln protein: MDWEESTEGNVVGESNKKSVISSEQMDVEAYGSLYSGRTKITRLIFIADHCGNESMRVEALRMAYDEIKKGDNTQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQDQPVVVAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISRSSRRM*

Protein Length: 435

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGTTTTTTCGATAATCATTGAGGGAATGTCGTACCTTTGTTGTTACCCATGAAATGAACTGAAACTTCAAGGATTTTGTTTGGTGGAAGTGTTTCACTCAGTGGCGGGGAAGTCGCTCGATATAAGTGGAAGTAGTAGCGGAAAGAGGAACGCTCAATTGATTCAACGGAAGCATAGAAAGCGGGGAGAGCAAACAGAGGCAAACAAAGGGAGAACAGAATTGATTTGGAATTGAAATTGGGTGAAG_-_ATGGATTGGGAAGAAAGCACGGAGGGGAACGTTGTGGGTGAGAGTAACAAGAAGAGTGTAATCAGCAGCGAGCAGATGGACGTGGAGGCTTATGGCTCTCTGTACAGCGGGAGGACAAAGATAACGCGTTTAATCTTCATCGCTGACCACTGCGGCAATGAGAGCATGAGGGTGGAGGCCCTGCGGATGGCCTACGATGAGATCAAGAAGGGCGACAACACCCAACTCTTCAAAGAGGTCGCCCACAAGATCGGTGGGAAGTTGGGTTCTGATTACTCCCTCGACCAAGACTGGATTGACTCAGTCGAACGCCGGGCTGAACAGCGCAAAGACAAGCTCGAGAATGAGCTAAATGGCTACAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCTGTTGTGGTTGCCAAGCTAAAATGTGCTGCAGGTCTAGCTCACCTCGAAAGCAAGAAATACAAGCTAGCTGCTCGCAAGTTTGTTGAGACAAACTTTGACCTAGGGAACAACTATACAGAAGTTATTGCTCCGCAGGATGTTGCAACTTATGGAGGACTTTGTGCACTTGCGTCCTTTGATAGATCAGAACTTAAGAATAAAGTTATAGACAATATCAATTTTCGAAATTTCTTGGAACTAGTGCCTGAAGTAAGGGAACTTATTCATGACTTCTATGCAAGCCGATATGCTTCATGCATAGAGTATCTGCAGAATCTCAAGGCAAACCTACTGCTTGATATACATCTACATGATCACGTGGAAACACTGTATGATCAGATTCGGCACAAAGCCCTTATCCAGTATACAACTCCTTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACTGGGGTGGAATTTGATAGGGATGCACGAGCAATGATGTTGCGGGCCAATATCATGAGGCATGATTTTATCTCAAGATCATCCAGGAGGATGTGA___CTTGGCATGATTATTTTTGCAAATTAATATTCTGTTGCATTTGACGATCTATACAAGCTTTGGGAATTCTGTAAATGTTGCAGGAATTGTTCTGATTTTTTAGTCTAAGAAATCTGTGTAAACATGCTTGATTGTGATCAATACGTTGGCAATTAGTGTTTTTTTTCTCCATTGCACCATTTATGTGGAGGTGCTATATATACTGTTTATAGCTTTTAAAGTTTTAATTTACCCCATATATTGAAATTGAAATGGGTATAGTACCTGAATAAGCTGCATTTGATCTGGATTCTTGAGTTGAACACCCTATGTCTTTTGATGACAATTTGAGGACATCTAATTTAGAGAGATTTCTTGAGGAATGCAGGGCTTTTTCCACGGATGGCGATTTAGGAGGTTGTTCGGTCCCAAGGTTTCCAAAGTCTGCTGGCCTGCTTAAGTTTTGAGTATTTACTTCTGATGCTCATTTCCCCAAGTCAAGATTGTTCACAGCGTTATTCATGAATGTTTCCAATAGGGAAATCAATTATTCTTCCAATGAACTGGTGAAGCCATGGTTCAGTTGATATCAGTCCTGTATTGTACTTGGTAATTTTGGAAATTTTATTTTTCAGTTAGAGCTCATCTTGGTAAAGACTGAGCAATAAGTGCTGACAAGAATGAGTTTATTCAAGGTGATTATGAGTTGATGCTTTGAGGATGCTGTTTCTTTCATTCTCTAATCATAATTTCGGTTTGGTTCTTTGTTAAACTGACTATTTTGTTTGAGAGGCACTATATA

Fln Alignment:

sp_v1.1_unigene7861___MDWEESTEGNVVGESNKKSVISSEQMDVEAYGSLYSGRTKITRLIFIADHCGNESMRVEALRMAYDEIKKGDNTQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTXXXXXXXXXXAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISRSSRRM
D5AC30______________MDWEESTEGNVVGEGNKKSVISSEQMDVEAYGSLYSGRTKIMRLIFIADHCGNESMRMEALRMAYDEIKKGDNTQLFKEVTHKIGGKLGSDYALDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQEQVVVVAKLKCAAGLAHLENKKYKLAARKFVETNFDLGNNYTDVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLHTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISKSSRRM

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
146		25		75	0.996473
174			80	20	0.995493
175	80		20		0.995493
178	80		20		0.995493
186	60		40		1.0
671	12		87		0.992554
712		88		11	0.923564
857	76		15		0.999983
1036	10		90		0.90298
1543		83	16		0.994512
1544	83	16			0.994512
1547	83			16	0.994512
1551		16		83	0.994512
1552	83	16			0.994512
1553	16			83	0.994512
1555			16	83	0.994512
1556		83	16		0.994512
1558	83			16	0.994512
1560	66		33		1.0
1561		16		83	0.994512
1562		83	16		0.994512
1565		83		16	0.994512
1566		83		16	0.994512
1573	83			16	0.994512
1577			83	16	0.994512
1578	83	16			0.994512
1579		83	16		0.994512
1580			16	83	0.994512
1587			80	20	0.995493
1848	33		66		1.0
2217	90		10		0.90298
2334	33	66			0.997452
2335	33			66	0.997452
2336	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain