SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7856

Length: 1060 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7856 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Patatin T5, putative n=1 Tax=Ricinus communis RepID=B9SUA7_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	protein	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Patatin/Phospholipase A2-related	IPR002641	-	0.0	68%
Blast2go	Acyl transferase/acyl hydrolase/lysophospholipase	IPR016035	-	0.0	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW42

Fln msg: Distance to subject end: 86 aas, your sequence is shorter than subject: 330 - 392

Fln protein: MEAGLEAGHGRLSCDSNKLSHEIFSMLENNFLFGLDWDKEFVDKKSTSGKVRILSIDGGGMQGIVAGRTLAYLEKILQAKTGDPDARIADFFDVAIGTGVGGLIAAMLFANDGTGRPLCRAEEAWRLLAEEGRRMFKPASGRLQAIFRRSGARFSGKSMERVLKRLFASKNGRSMTLKETVKPLLIPCYDLSSAAPFLFSRADALETDNFDFRLWEVCRAAAAAPGFFEPVFLSSVDGRTSCTAIDAGLVMNNPTAAAITHVVHNKQEFPSVRCVEDLLVLSVGTGHFDRAYDYEKVKRWGAGQWAKPVVKIVGDGISENVDHVLLRHGI

Protein Length: 331

Fln nts: CTCCATTTATTTCAGCTATTGTTAGTGGAGAAGATCCGTTAACTTTACGCATTGCTATTCTAATCGAATT_-_ATGGAGGCGGGCTTGGAAGCCGGTCATGGCCGACTGAGCTGCGACAGCAACAAGCTCAGCCACGAGATTTTTTCGATGCTGGAGAACAATTTTCTGTTCGGCCTCGACTGGGATAAAGAATTCGTCGACAAGAAGTCCACAAGCGGAAAGGTCCGCATTCTGAGTATCGATGGCGGGGGGATGCAAGGCATCGTGGCGGGGCGCACACTGGCGTATCTGGAAAAGATCCTGCAGGCGAAAACCGGCGATCCCGATGCCAGAATTGCGGACTTTTTCGACGTCGCAATCGGGACCGGCGTCGGAGGTCTCATCGCCGCCATGCTCTTCGCCAACGACGGCACAGGCCGCCCTCTGTGCCGGGCGGAGGAAGCGTGGAGGTTGCTGGCGGAAGAGGGCCGCAGAATGTTCAAGCCGGCGTCGGGGAGGCTCCAGGCTATATTCCGGCGGTCGGGCGCCCGGTTCTCCGGCAAGAGCATGGAACGCGTCTTGAAGCGCCTGTTCGCCAGCAAGAACGGGCGGAGCATGACGCTGAAGGAAACGGTAAAGCCCCTCTTGATTCCCTGCTACGACCTGTCGAGCGCCGCCCCTTTCCTTTTCTCCCGGGCCGATGCACTCGAGACGGACAACTTCGACTTCCGCCTCTGGGAAGTCTGTCGGGCGGCGGCGGCGGCTCCTGGGTTCTTTGAGCCCGTGTTCTTGAGTTCCGTCGACGGTCGGACTAGCTGTACGGCAATCGACGCGGGATTGGTGATGAACAATCCGACGGCGGCGGCCATAACGCACGTTGTGCATAACAAGCAGGAGTTTCCGTCTGTGCGATGCGTGGAAGATTTGCTGGTTCTCTCCGTGGGAACGGGGCATTTCGATCGGGCTTACGATTACGAGAAGGTGAAGAGATGGGGCGCCGGCCAGTGGGCTAAGCCTGTCGTTAAAATCGTCGGAGATGGAATTTCCGAGAATGTGGATCACGTCCTATTGAGACATGGCATT

Fln Alignment:

sp_v1.1_unigene7856___VRILSIDGGGMQGIVAGRTLAYLEKILQAKTGDPDARIADFFDVAIGTGVGGLIAAMLFANDGTGRPXXXXXXXXXXXXXXXXRMFKPASGRLQAIFR-RSGARFSGKSMERVLKRLFASKNGRSMTLKETVKPLLIPCYDLSSAAPFLFSRADALETDNFDFRLWEVCRAAAAAPGFFEPVFLSSVD--GRT-SCTAIDAGLVMNNPTAAAITHVVHNKQ------EFPSVRCVE--DLLVLSVGTGHFDRAYDYEKVKRWGAGQWAK-----PVVKIVGDGISENVD
A9NW42______________ITVLSIDGGGVRGIIPAAILEFLEETLQKLDG-PDVSIADYFDVIAGTSTGGLVTAMLAAPNENNRPLFAAKDITKFYLDNCPHIFPPTTGFLQSVFKYLNGPKYSGDYLHKILKKYLGDKR-----LHQTLTNVVITTYDIQIQQPAIFSTFTAKKDKLTDAFLADVCIGSSAAPTYLPAYYFQTKDSSGNTRDFNLVDGGIAANNPTLLAINQVTKQTLVDCPGFAVPTSKASDTTKFLVLSLGTGQKMETYNATDAAKWGLIGWLSNGGKTPIIDMFSQSSADMVD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
662		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
320	334	GCC GCC GCC GCC GCC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain