SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7822

Length: 1015 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7822

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S27 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SLV7_PHYPA	-	-	2.0e-33	80%
FL-Next	sp=Ribosomal protein S27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	protein	-	-	1.53464e-35	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	1.53464e-35	97%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	1.53464e-35	97%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S27e	IPR000592	-	1.53464e-35	97%
Blast2go	Ribosomal protein, zinc-binding domain	IPR011332	-	1.53464e-35	97%
Blast2go	Ribosomal protein S27e, zinc-binding domain	IPR023407	-	1.53464e-35	97%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
89		75	25		0.996473
91	75		25		0.996473
92		75	25		0.996473
181	25		75		0.996473
201			33	66	0.997452
202		66	33		0.997452
204			33	66	0.997452
712		80	20		0.995493
917	4	4		91	0.997977
918	1		94	3	0.924724
953	88			11	0.999952
966	66		33		0.997452
968	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain