SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7816

Length: 2085 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7816
ATGGGTGAACCGAAATGCAGGCCAGACCTCGTCAAATCCGCTAGGGCATAAACGAACAGCCTCCACGCCATGTGTCCACCCGCTTCACCAACTCCAACCTTCCTTCCTTGATCGATGCCTGCGAGGTACTCTGAATCTTATTAGATCCATGACACATTGCTTCACGCTCCTTTAGAGCTTCGAAGTTGCTGGAACAATGAACTCCTGCGCGTTCTCACCCGCATTGCACTACTGTCACACGAGATGCGAGTCTCCGAGCAGCAGCAGCTCCAATGGCGTCGCTGCGCCTTCGCTTGTTGCAGAGAGGTCCATTGTTCGAGTCCTCCAGCGATCTGTCGTCGCACCTGTTCTTATGGGCGCAAAGATCCGCAAGGGGAAGAAAGGTCGCGAAACAGAGTATCCGTGGCCGGAGAAAGTCTGCGGGGACTCCAAAGACGGTTATCTGAGCTACTTGTCGAGTTTCAAGCCCAGTTCTATCAAGCCTAAGCCCTTCATCCTTCCTTTCGAGAGGCCAATTGCTGAAATCGAAAAAAAAATCGCTGAGGTAAGGGATTTGGCAAAGGAGACTGGCATGGACTTCAGTGAACAGATTCTTGAGCTGGAGAAAAAATATGAGCAGGTCGTGAAAGATCTATATGCACAACTGACTCCAATACAGCGTTTAAGTGTTGCACGGCATCCAAATAGGCCTACTTTTCTTGATCATGTGTTCAACATTACCGATAAGTGGGTGGAGCTACATGGTGATCGTGCCGGATATGATGATCCGGCGATTGTGACTGGTATTGGAAGCATAGATGGAATCAGCTTTATGTTCATAGGACATCAGAAAGGCCGGAATACAAAGGAAAATATCTATCGAAATTTTGCAATGCCAACTCCACATGGCTATCGAAAGGCTTTGCGAATGATGGAGCATGCTGATCACCATGGTTTCCCCATTATTTCATTTATTGATACTCCAGGCGCATATGCTGAGAAACAGTCTGAAGAAAAAGGCCAAGGGGAAGCAATAGCCCACAATTTGAGGTCAATGTTTGGCCTTAAGGTTCCTGTTGTTACAGTTGTGATTGGAGAAGGTGGTTCAGGTGGAGCACTTGCAATAGGATGCTGTAACAAAATGCTAATGCTAGAGAATTCAGTGTATTATGTAGCCAGTCCCGAGGCGTGTGCTGCAATCCTTTATAAGTCAGCTAAAGCTGCTCCTAAGGCAGCAGAGAAATTGAAAATTACAGCCCAAGAGCTACACAAGTTTAAGATTAGCGATGAAGTTATTCCTGAACCTCTTGGTGGTGCACATACAAACCCATTTGAGGCTTCAAAACTAATAAAGAATGCTGTCATGAAGCACATGCATGAGCTGCTCAAAATGAGCCCTGATGAGGTGCAGCGGGATCGGATTGCCAAGTTCCGTGCTATTGGTCTCTTTCAAGATGGTGAATTGGATTCTTATAGAAAACGTAACATGAAGAAGAGGGATGCACCTATCCCAGAGCCACCAAGCATTGTGGCCCCTTCACTGCAGACATTAGAATCAAGTCTAAATTACAAGCCTGAAAACATGAAAGGGGATGATGTAGATTTGAAGTTACCCTCACTAAGCCCAAAGTCAGAGAACATAAAAAGGGATGATCCAAAAGTTGACAAAACAGACACTGTTAATGCATCATCTAATCACAATTTGGTTTAGGATTAGGTAAGCTTTAGAATCCAGTGGGCTTTCTGCGTCAATAGGAAGTTTGTTTATTTTATTGGCCAAAGTTAATTCAATAACACATTCTTGGTAGGGGTGTAATAAATAAAGCTTTGAAGTAAGATATGTCCATGACATTGTTCTACTTTGCTGTAAATGATATGTTACAGAAATGCAGGCTGTTCTTTTTGCAACAGTTACAACTACAAACGTGAGTTCAGAAAAGGGCCTGAGCTCAGATAATTTTGTGAATTTAGAGCTCAAAGCTGTCCTTTAAAATCGGTTATAATGTTGTCACTTACTGGGTAAAAGGGGTTTGTATCGTTCAGAGGCATTACATGTGTCTATTAGCAAATTTACGATCATTCTTACGTTATTTATATGTAGGTTAC

Ace file of the UniGene sp_v1.1_unigene7816

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acetyl-CoA carboxylase	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	chloroplast carboxyltransferase alpha subunit isoform 2	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Acetyl-CoA carboxylase, alpha subunit	IPR001095	-	0.0	80%
Blast2go	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVD9

Fln msg:

Fln protein: MNSCAFSPALHYCHTRCESPSSSSSNGVAAPSLVAERSIVRVLQRSVVAPVLMGAKIRKGKKGRETEYPWPEKVCGDSKDGYLSYLSSFKPSSIKPKPFILPFERPIAEIEKKIAEVRDLAKETGMDFSEQILELEKKYEQVVKDLYAQLTPIQRLSVARHPNRPTFLDHVFNITDKWVELHGDRAGYDDPAIVTGIGSIDGISFMFIGHQKGRNTKENIYRNFAMPTPHGYRKALRMMEHADHHGFPIISFIDTPGAYAEKQSEEKGQGEAIAHNLRSMFGLKVPVVTVVIGEGGSGGALAIGCCNKMLMLENSVYYVASPEACAAILYKSAKAAPKAAEKLKITAQELHKFKISDEVIPEPLGGAHTNPFEASKLIKNAVMKHMHELLKMSPDEVQRDRIAKFRAIGLFQDGELDSYRKRNMKKRDAPIPEPPSIVAPSLQTLESSLNYKPENMKGDDVDLKLPSLSPKSENIKRDDPKVDKTDTVNASSNHNLV*

Protein Length: 499

Fln nts: ATGGGTGAACCGAAATGCAGGCCAGACCTCGTCAAATCCGCTAGGGCATAAACGAACAGCCTCCACGCCATGTGTCCACCCGCTTCACCAACTCCAACCTTCCTTCCTTGATCGATGCCTGCGAGGTACTCTGAATCTTATTAGATCCATGACACATTGCTTCACGCTCCTTTAGAGCTTCGAAGTTGCTGGAACA_-_ATGAACTCCTGCGCGTTCTCACCCGCATTGCACTACTGTCACACGAGATGCGAGTCTCCGAGCAGCAGCAGCTCCAATGGCGTCGCTGCGCCTTCGCTTGTTGCAGAGAGGTCCATTGTTCGAGTCCTCCAGCGATCTGTCGTCGCACCTGTTCTTATGGGCGCAAAGATCCGCAAGGGGAAGAAAGGTCGCGAAACAGAGTATCCGTGGCCGGAGAAAGTCTGCGGGGACTCCAAAGACGGTTATCTGAGCTACTTGTCGAGTTTCAAGCCCAGTTCTATCAAGCCTAAGCCCTTCATCCTTCCTTTCGAGAGGCCAATTGCTGAAATCGAAAAAAAAATCGCTGAGGTAAGGGATTTGGCAAAGGAGACTGGCATGGACTTCAGTGAACAGATTCTTGAGCTGGAGAAAAAATATGAGCAGGTCGTGAAAGATCTATATGCACAACTGACTCCAATACAGCGTTTAAGTGTTGCACGGCATCCAAATAGGCCTACTTTTCTTGATCATGTGTTCAACATTACCGATAAGTGGGTGGAGCTACATGGTGATCGTGCCGGATATGATGATCCGGCGATTGTGACTGGTATTGGAAGCATAGATGGAATCAGCTTTATGTTCATAGGACATCAGAAAGGCCGGAATACAAAGGAAAATATCTATCGAAATTTTGCAATGCCAACTCCACATGGCTATCGAAAGGCTTTGCGAATGATGGAGCATGCTGATCACCATGGTTTCCCCATTATTTCATTTATTGATACTCCAGGCGCATATGCTGAGAAACAGTCTGAAGAAAAAGGCCAAGGGGAAGCAATAGCCCACAATTTGAGGTCAATGTTTGGCCTTAAGGTTCCTGTTGTTACAGTTGTGATTGGAGAAGGTGGTTCAGGTGGAGCACTTGCAATAGGATGCTGTAACAAAATGCTAATGCTAGAGAATTCAGTGTATTATGTAGCCAGTCCCGAGGCGTGTGCTGCAATCCTTTATAAGTCAGCTAAAGCTGCTCCTAAGGCAGCAGAGAAATTGAAAATTACAGCCCAAGAGCTACACAAGTTTAAGATTAGCGATGAAGTTATTCCTGAACCTCTTGGTGGTGCACATACAAACCCATTTGAGGCTTCAAAACTAATAAAGAATGCTGTCATGAAGCACATGCATGAGCTGCTCAAAATGAGCCCTGATGAGGTGCAGCGGGATCGGATTGCCAAGTTCCGTGCTATTGGTCTCTTTCAAGATGGTGAATTGGATTCTTATAGAAAACGTAACATGAAGAAGAGGGATGCACCTATCCCAGAGCCACCAAGCATTGTGGCCCCTTCACTGCAGACATTAGAATCAAGTCTAAATTACAAGCCTGAAAACATGAAAGGGGATGATGTAGATTTGAAGTTACCCTCACTAAGCCCAAAGTCAGAGAACATAAAAAGGGATGATCCAAAAGTTGACAAAACAGACACTGTTAATGCATCATCTAATCACAATTTGGTTTAG___GATTAGGTAAGCTTTAGAATCCAGTGGGCTTTCTGCGTCAATAGGAAGTTTGTTTATTTTATTGGCCAAAGTTAATTCAATAACACATTCTTGGTAGGGGTGTAATAAATAAAGCTTTGAAGTAAGATATGTCCATGACATTGTTCTACTTTGCTGTAAATGATATGTTACAGAAATGCAGGCTGTTCTTTTTGCAACAGTTACAACTACAAACGTGAGTTCAGAAAAGGGCCTGAGCTCAGATAATTTTGTGAATTTAGAGCTCAAAGCTGTCCTTTAAAATCGGTTATAATGTTGTCACTTACTGGGTAAAAGGGGTTTGTATCGTTCAGAGGCATTACATGTGTCTATTAGCAAATTTACGATCATTCTTACGTTATTTATATGTAGGTTAC

Fln Alignment:

sp_v1.1_unigene7816___MNSCAFSPALHYCHTRCEXXXXXXXNGVAAPSLVAERSIVRVLQRSVVAPVLMGAKIRKGKKGRETEYPWPEKVCGDSKDGYLSYXXXXXXXXXXXXXXXXXFERPIAEIEKKIAEVRDLAKETGMDFSEQILELEKKYEQVVKDLYAQLTPIQRLSVARHPNRPTFLDHVFNITDKWVELHGDRAGYDDPAIVTGIGSIDGISFMFIGHQKGRNTKENIYRNFAMPTPHGYRKALRMMEHADHHGFPIISFIDTPGAYAEKQSEEKGQGEAIAHNLRSMFGLKVPXXXXXXXXXXXXXALAIGCCNKMLMLENSVYYVASPEACAAILYXXXXXXXXXXXXXXITAQELHKFKISDEVIPEPLGGAHTNPFEASKLIKNAVMKHMHELLKMSPDEVQRDRIAKFRAIGLFQDGELDSYRKRNMKKRDAPIPEPPSIVAPSLQTLESSLNYKPENMKGDDVDLKLPSL--SPKSENIKRDDPKVDKTD-----TVNASSNHNLV
A9NVD9______________MNSCSFSPALRHSHTRCESL------STNSNLVAAERFRVRVLPRSVVSRVFMGFKIRKGKKGRETEYPWPEKVGGNLKDGYLRYLSSFKPMSTKPKPFLLPFERPIADIEKKIAEVRDLAKETGMDFSEQILELEKKYEQVVKDLYAQLTPIQRLSVARHPNRPTFLDHVFNITDKWVELHGDRAGYDDPAIVTGIGSIDGISFMFIGHQKGRNTKENIHRNFAMPTPHGYRKALRMMKHADHHGFPIISFIDTPGAYAAKQSEEKGQGEAIAHNLRSMFGLKVPIVTVVIGEGGSGGALAIGCCNKMLMLENSVYYVASPEACAAILYKSAKAAPKAAEKLRITAQELEKFKITDEVIPEPLGGAHMDPFEASKQIKNAVMKHMHELLQLSPDEVQRDRIAKFRSIGLWQDSEIDTYRKRNMKKRDAPIPEPSSIAAPSLQTLESSLNYKPENMKEDDVDFKVHPLNSSVKTENVKRGDLKVDKTDEETRSTVNASSNHNLI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
353		77		22	0.999999
431			20	80	0.995493
432		80		20	0.995493
611	80			20	0.995493
612	80		20		0.995493
613	80		20		0.995493
614			20	80	0.995493
669	12		87		0.992554
672			12	87	0.992554
673			12	87	0.992554
880	90	10			0.90298
1525		87	12		0.992554
1590	88		11		0.923564
1592			11	88	0.923564
1598			88	11	0.923564
1800	78		21		1.0
1804	86			13	0.999973
1832		54		45	1.0
1984	36			63	1.0
1998		57		42	1.0
2010			50	50	1.0
2011			50	50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
257	268	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain