SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7795

Length: 1360 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7795

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	triacylglycerol lipase 2	-	-	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH1

Fln msg:

Fln protein: MQRLRSSAPSMIRRTFGIPELKRKTSNTWAAVQDTFYSTKDVFERHRVVFTIGTSIASVGTAWAGYSLRYLHQEKVEQRLESIEKAMTKVHHVEQEELKKIVNTGNVSYPACVATVGTSLIIGYGLGWRGGKWHANRTFRKQQQKLLGLNKPQKWRFLRKPFSRLRPSEAKVGESGITHMNAPNTQQTQLS*

Protein Length: 193

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCATGGGAGGACGCAATTCAAGTGCATGAGGCTCGGCTTTAAAGAATTGTGTTATATTTTTGCCATGGCACTTATCTTTATGAAAAAGAAATGAGATTGTCACGCAAGGGAGCGAATTAAGTGAAAA_-_ATGCAGCGACTCAGAAGCTCTGCTCCCTCTATGATACGCAGAACCTTTGGAATTCCAGAACTGAAACGCAAAACTTCCAATACATGGGCTGCTGTTCAGGACACCTTTTATTCTACGAAGGATGTATTCGAGAGGCACCGTGTGGTATTCACCATTGGAACATCCATTGCTTCTGTAGGAACTGCATGGGCAGGTTATTCTTTAAGATACCTTCATCAGGAAAAGGTTGAACAACGCCTTGAGTCAATTGAGAAAGCTATGACAAAGGTTCATCATGTCGAACAGGAGGAACTCAAGAAAATTGTCAATACAGGAAATGTTAGCTACCCAGCATGTGTTGCTACCGTGGGAACCTCTCTAATTATTGGGTATGGGCTTGGATGGCGAGGTGGGAAATGGCATGCAAACAGAACATTCCGTAAGCAGCAGCAGAAGCTTCTAGGGTTGAACAAGCCTCAAAAATGGCGGTTTTTGAGAAAACCTTTTTCAAGATTAAGACCTTCTGAAGCCAAGGTAGGGGAGTCTGGAATCACACATATGAATGCTCCAAATACTCAACAAACACAGCTATCCTGA___TCAGCTATCCTTGTATTTGTTTTGCAAATTGTGGTATTTCTTCCAATATCCTTGGTCATTCAGGGTATAGCCACATAAGTTTGTATTAGCCATTATTTTTCTAAAGAAATTAAAAATCCATATCATGGAAATAATTTTCTTTAAGTTGTTCAGCAGGGCTTTCTTATGGGAACTAGCTTGGTTTATTTGGACAGTTATCCCTTCAGTTCATACTCCCACACCCTTTGTCCTAAATTTTCTTTTCCATTGAAAAAGCAGAATTGAACTTTAAAATATGGTGTTTACATTGGCTTAAGTGCCAAGTGCCAGAAGATTGCACACTGCAATGAAACATCATAGTTTCACAGTGCATACATTTTTCAGCTACAGAGCACTCATACTTTTAGCATACTATGGGAGATAGACCATCTTAAATAGTGTGTTTTTCTTGATTGTGCATATGATATCTGCAAATGATTTCTGAAACTAATATTGACATGTACATGTGCGTGAAAGATGAAATATCTAGATTTCTTCTTGATTTGACAGAAAACTTCTGTGCTCCTGTCGTTTCTCAAAATCAGTCCTGTTGGAGAACATACCATATGATAGACTATAGTGGCTTTTGCTGGTTTGTGTTATGGAATTGATAG

Fln Alignment:

sp_v1.1_unigene7795___MQRLRSSAPSMIRRTFGIPELKRKTSNTWAAVQDTFYSTKDVFERHRVVFTIGTSIASVGTAWAGYSLRYLHQEKVEQRLESIEKAMTKVHHVEQEELKKIVNTGNVSYPACVATVGTSLIIGYGLGWRGGKWHANRTFRK-QQQKLLGLNKPQKWRFLRKPFSRLRPSEAKVGESGITHMNAPNTQQTQLS
A9NKH1______________MQRVRSSAPSMMRRSFGIPQLKRRASNTWAAVQDTFYSTKDVFERHRVVFTIGTSIASVGTAWAGYSLRYLHQAKVEERLESIEKAMTRVHHVEEEELKKIVNKGNVSYPACVATVGISLIIGYGLGWRGGKWHANRIFRKQQQQKLIGLNKPQKWRFLRKPFSRLRPSEGKEGESGITHTNAPNTQQAQLS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
103	66		33		0.997452
119	66		33		0.997452
199	85			14	0.993533
389	90	10			0.90298
393		90	10		0.90298
402	90	10			0.90298
850		87	12		0.992554
851		87	12		0.992554
852	87	12			0.992554
854	87		12		0.992554
858		12		87	0.992554
859			87	12	0.992554
860		12	87		0.992554
1193	12			87	0.992554
1221	42		57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain