SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7793

Length: 1625 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7793

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to kinesin motor protein-related n=1 Tax=Vitis vinifera RepID=UPI0001985761	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	kinesin motor	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kinesin, motor domain	IPR001752	-	0.0	78%
Blast2go	Kinesin, motor region, conserved site	IPR019821	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: Distance to subject end: 105 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 410 - 509

Fln protein: MEGTEENRGVNYRTLEELFRVANERKGQFKYDISVSVLEVYNEQIRDLLASPQPGQAIKKLEIKQMAEGIHHVPGLVEAQVHSMNEVWEVLQTGSSARAVGSTNANEHSSRSHCILYVMVRGENSINGECTRSKLWLVDLAGSERVAKTDVQGDRLKEAQNINKSLSALGDVISSLATKNSHIPFRNSKLTHLLQHELGGHSKTLMFVQISPNENDISETLCSLNFASRVRGIELGPARKQYDSTELVKYKQMVEKAKQDGKSKEGSMKKMEETIQNLEAKLKGRDQANKLLHDKVKELEGQLANERKARLNLESKLKEQQQQAGKVAEKPPLLVRQFGGVKTVNETNVLSKDLVNLSDALTENKQMLNAMECNGKPQEGELLLKNGLIDPYSKGQKENKSEPYDDQNVN

Protein Length: 411

Fln nts: GCAGTTAATCAGCACGAGGAACTAAAACTCCAGTACACTGAACTCAAAACAAAGTTTGTAGAAGAGAGCAAGGAACGCAAACAGCCTTATAACAAACTTTTGGAGCTGAAAGGAAATATTAGAGTCTTCTGTAGGTGTCGTCCATTGGGTGCTCAAGAGGTTGCAGAAGGAGCTGTTTCTGTGGCAGAATTTGACACTGCAAAAGACTCTGAGGTCAGTATCCGAACCAATGGAGCCTCCAAAAAGGTCTTCAAATTTGATTCAGTTTTTACTCCAGAAGCTGGTCAAGTGGATGTTTTTGCAGATACTGCACCTGTTGTGGTATCAGTTTTGGATGGGTACAATGTTTGTATATTTGCATATGGACAAACTGGAACTGGAAAGACATTTACA_-_ATGGAGGGAACAGAAGAAAACCGTGGTGTTAACTATCGAACATTGGAGGAGCTGTTCCGAGTAGCTAATGAAAGGAAAGGACAATTCAAATATGATATCTCTGTGAGTGTGTTAGAGGTTTACAATGAACAGATACGTGACTTGCTTGCATCTCCTCAGCCAGGACAAGCTATCAAGAAGCTAGAGATAAAACAGATGGCTGAAGGGATTCATCACGTACCAGGTCTTGTTGAAGCACAAGTGCACAGTATGAATGAGGTTTGGGAAGTGCTGCAAACTGGAAGCAGTGCTAGGGCTGTTGGCTCCACTAATGCCAATGAGCACAGTAGTCGTTCTCACTGCATACTTTATGTGATGGTAAGGGGGGAGAACTCAATTAATGGAGAATGCACTAGGAGCAAGCTTTGGTTGGTTGATCTAGCTGGAAGTGAGCGAGTAGCAAAAACTGATGTTCAAGGGGATCGTCTTAAGGAAGCACAGAACATCAACAAGTCACTCTCTGCTCTTGGGGATGTGATATCCTCTCTTGCAACTAAAAATAGTCACATTCCCTTCAGGAACTCCAAGCTGACACACTTACTACAACATGAACTAGGAGGACACTCAAAAACACTTATGTTTGTACAGATTAGTCCAAATGAAAATGACATAAGTGAAACACTTTGCTCACTGAATTTTGCTAGCAGAGTTCGTGGAATAGAGCTGGGTCCTGCTAGGAAACAGTATGATTCTACAGAGCTAGTGAAGTATAAACAGATGGTCGAGAAGGCCAAACAAGATGGAAAATCAAAGGAGGGTTCAATGAAGAAAATGGAAGAAACCATACAAAATTTGGAAGCAAAACTGAAAGGAAGAGACCAGGCAAACAAACTTCTTCATGATAAGGTAAAGGAACTAGAAGGACAACTTGCAAATGAGAGAAAGGCTCGATTGAATTTGGAAAGCAAACTCAAAGAACAACAGCAGCAGGCAGGGAAAGTGGCTGAAAAGCCACCCCTCCTCGTACGTCAATTTGGAGGTGTAAAGACTGTCAATGAAACAAATGTATTGTCTAAGGACTTGGTCAACCTCTCAGATGCTTTGACTGAAAATAAACAAATGCTGAATGCTATGGAATGCAATGGAAAACCACAGGAGGGTGAGCTCCTTTTGAAAAATGGCCTGATAGATCCTTACTCAAAGGGGCAGAAAGAAAATAAGTCTGAGCCATATGATGATCAAAATGTGAACCC

Fln Alignment:

sp_v1.1_unigene7793___RTLEELFRVANE---RKGQFKYDISVSVLEVYNEQIRDLLASPQPGQAIKKLEIKQMAEGIHHVPGLVEAQVHSMNEVWEVLQTGSSARAVGSTNANEHSSRSHCILYVMVR--GENS-INGECTRSKLWLVDLAGSERVAKT-DVQGDRLKEAQNINKSLSALGDVISSLATKNSHIPFRNSKLTHLLQHELGGHSKTLMFVQISPNENDISETLCSLNFASRVRGI
D5ACB2______________RASEDILKLMNRPFYREQGFR--LWLSFFEIYGGKLYDLLGDR------RKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
978		83		16	0.994512
979			33	66	1.0
980	60		20	20	0.99255
981		80	20		0.995493
982	80		20		0.995493
983	80			20	0.995493
989	80	20			0.995493
995	80	20			0.995493
996			80	20	0.995493
998	80			20	0.995493
999		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain