SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7791

Length: 1945 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7791
CGTCGTGACCTTGGCTGTCACTCAGGTTTTTTATACGGGATTGGAAGTGGGGTTGAGCAGAGTGATGCAAAGGCTTTTTTGTATCATCATTTTGCTGCAGAAGGTGGAAACTTTCAGTCGAAGATGGCACTGGCCTATACCTATTATCGACAACAGATGTATGAGAAATCTGTTAAGCTTTATGCAGAACTTGCATCTGTAGCAGTGGCTAGCTTTCTTAGTTTCAATGATTCACCATTGGTTGAACCAGTAAGGATCAATGATGGAGCTGAAGAGAACAAAGCAGCATTAAGGAAGTCCCGTGGTGAGGAAGATGATGATTTCCAAATTATTGAATATCAGGCCCAGAAAGGGAATGCACTGGCAATGTATAAACTTGGTATATTCTACTACTTCGGTTTGAGGGGGGTTCGCCGTGACAATGCGAAAGCATTATCATGGTTTCTTAAAGCGGTTGAGAAGGGAGACTCAAATTCGATGGAATTTCTCGGTGAAATTTATGCAAGAGGTTCCGGAGTTGAGAGGAATTTTACCAAGGCACTAGAGTGGTTCAAGGCTGCCTCTAGGCGAAAGCGGTTTTCTGCATATAATGGCATTGGCTATTTGTATATGAAGGGTCATGGAGTAGAAAAGAAAAATTATACAAAGGCAAGAGAATTCTTCAAAAAGGCAGCGGAAAATGACGACCCCAATGGTCATGGCCATTACAATCTGGGAGTGTTGTACTTTAAAGGACTGGGTGTGAAGAAAGACATTAAAGTAGCTTCCAGGTATTTTATAACAGCAGCTAATGCTGGTCAACCAAAGGCCTTCTATCAATTAGCAAAAATGTTCCAGAAAGGCATTGGTCTGAAAAAGGATCTTAAGATGGCCACTACATTCTATAAGCTTGTTGCAGAGAGAGGACCTTGGGGATCCTTGTTGCGATGGGCATTAGAGTGTTACTTGAAAGGGCAAACAGGCAGAGCTCTGCTATTGTACTCGAGAGTTGCTGAACTTGGATATGAGGTTGCACAGAGTAATGCTGCATGGATTCTTGATAAGTTTGGGGAATATGATATATGCATAGGAAAGTCAGGTTTCTGCAGTGATGTTGAACGACATCAACGTGCACACACCCTTTGGTGGCATGCATCAGAGCAGGGTAATGAGCATGCGGCACTTTTAATTGGGGATGCCTATTATTATGGCAGGGGTACTGAAAGAGATTTTGAGCGTGCTGCAGAGGCTTACATGCATGCTCATTCCCAGGCAAATGCCCAGGCTATGTTCAACCTTGGATACATGCATGAACACGGAGAGGGCCTTCCTTTTGATTTGCACTTGGCAAAACGATATTATGATCAAGCTTTGCAGACCGATTCACATGCCAAGTTGCCTGTGATGCTTGCTCTTCTGAGTGTATGGATTAGAAAGAACTATGGTGACAGCTGCTTGGTGATATTAATCGATTCTCTCCCTGGCATGCTTCCCAAATTAGGAAACTGGTTGAAGAAGACCCTTATTGATGATGGCAACGTGACTTTAGTTACATTGTTTGCCTGCCTTTTGACAGTCTTGTATCTTCGTGATAGGCAAAGGCGAATGGCTGCTCAAGTAGTTCCTCAGCCTCAAGTAGATAATAATTGATAATCATGACTTTCTGAGGTCAGTCTCGTCTAATTCAATGTTCTGCTGAACATGAACATTAAGAATCATGAGTGGGCATATAGTATTTTCTTGTACATGGGTTCTTTGGCCTGAGATGACTTCCTGTAGTTTGAGTTTTGTCGTAGAGTCATTGGGGTCATCTGACTATGTGACCTAATTCGAGATCATATAGGGCCATGCGAAGTAATTGCTGAACAAATACCTAGTTTTTTGGATGGAAGATATTTCACCTTTTTCTTTGGCTAAAATGCTTCCTTCCATTGAAGTATCAAAATAATACAGTGCATTTTCCACC

Ace file of the UniGene sp_v1.1_unigene7791

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	suppressor of lin-12-like protein-related / sel-1 protein-related; K07126	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sel1-like	IPR006597	-	0.0	81%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	0.0	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR29

Fln msg: your sequence is longer than subject: 543 - 266

Fln protein: RRDLGCHSGFLYGIGSGVEQSDAKAFLYHHFAAEGGNFQSKMALAYTYYRQQMYEKSVKLYAELASVAVASFLSFNDSPLVEPVRINDGAEENKAALRKSRGEEDDDFQIIEYQAQKGNALAMYKLGIFYYFGLRGVRRDNAKALSWFLKAVEKGDSNSMEFLGEIYARGSGVERNFTKALEWFKAASRRKRFSAYNGIGYLYMKGHGVEKKNYTKAREFFKKAAENDDPNGHGHYNLGVLYFKGLGVKKDIKVASRYFITAANAGQPKAFYQLAKMFQKGIGLKKDLKMATTFYKLVAERGPWGSLLRWALECYLKGQTGRALLLYSRVAELGYEVAQSNAAWILDKFGEYDICIGKSGFCSDVERHQRAHTLWWHASEQGNEHAALLIGDAYYYGRGTERDFERAAEAYMHAHSQANAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALQTDSHAKLPVMLALLSVWIRKNYGDSCLVILIDSLPGMLPKLGNWLKKTLIDDGNVTLVTLFACLLTVLYLRDRQRRMAAQVVPQPQVDNN*

Protein Length: 544

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTTTATACGGGATTGGAAGTGGGGTTGAGCAGAGTGATGCAAAGGCTTTTTTGTATCATCATTTTGCTGCAGAAGGTGGAAACTTTCAGTCGAAGATGGCACTGGCCTATACCTATTATCGACAACAGATGTATGAGAAATCTGTTAAGCTTTATGCAGAACTTGCATCTGTAGCAGTGGCTAGCTTTCTTAGTTTCAATGATTCACCATTGGTTGAACCAGTAAGGATCAATGATGGAGCTGAAGAGAACAAAGCAGCATTAAGGAAGTCCCGTGGTGAGGAAGATGATGATTTCCAAATTATTGAATATCAGGCCCAGAAAGGGAATGCACTGGCAATGTATAAACTTGGTATATTCTACTACTTCGGTTTGAGGGGGGTTCGCCGTGACAATGCGAAAGCATTATCATGGTTTCTTAAAGCGGTTGAGAAGGGAGACTCAAATTCGATGGAATTTCTCGGTGAAATTTATGCAAGAGGTTCCGGAGTTGAGAGGAATTTTACCAAGGCACTAGAGTGGTTCAAGGCTGCCTCTAGGCGAAAGCGGTTTTCTGCATATAATGGCATTGGCTATTTGTATATGAAGGGTCATGGAGTAGAAAAGAAAAATTATACAAAGGCAAGAGAATTCTTCAAAAAGGCAGCGGAAAATGACGACCCCAATGGTCATGGCCATTACAATCTGGGAGTGTTGTACTTTAAAGGACTGGGTGTGAAGAAAGACATTAAAGTAGCTTCCAGGTATTTTATAACAGCAGCTAATGCTGGTCAACCAAAGGCCTTCTATCAATTAGCAAAAATGTTCCAGAAAGGCATTGGTCTGAAAAAGGATCTTAAGATGGCCACTACATTCTATAAGCTTGTTGCAGAGAGAGGACCTTGGGGATCCTTGTTGCGATGGGCATTAGAGTGTTACTTGAAAGGGCAAACAGGCAGAGCTCTGCTATTGTACTCGAGAGTTGCTGAACTTGGATATGAGGTTGCACAGAGTAATGCTGCATGGATTCTTGATAAGTTTGGGGAATATGATATATGCATAGGAAAGTCAGGTTTCTGCAGTGATGTTGAACGACATCAACGTGCACACACCCTTTGGTGGCATGCATCAGAGCAGGGTAATGAGCATGCGGCACTTTTAATTGGGGATGCCTATTATTATGGCAGGGGTACTGAAAGAGATTTTGAGCGTGCTGCAGAGGCTTACATGCATGCTCATTCCCAGGCAAATGCCCAGGCTATGTTCAACCTTGGATACATGCATGAACACGGAGAGGGCCTTCCTTTTGATTTGCACTTGGCAAAACGATATTATGATCAAGCTTTGCAGACCGATTCACATGCCAAGTTGCCTGTGATGCTTGCTCTTCTGAGTGTATGGATTAGAAAGAACTATGGTGACAGCTGCTTGGTGATATTAATCGATTCTCTCCCTGGCATGCTTCCCAAATTAGGAAACTGGTTGAAGAAGACCCTTATTGATGATGGCAACGTGACTTTAGTTACATTGTTTGCCTGCCTTTTGACAGTCTTGTATCTTCGTGATAGGCAAAGGCGAATGGCTGCTCAAGTAGTTCCTCAGCCTCAAGTAGATAATAATTGA___TAATCATGACTTTCTGAGGTCAGTCTCGTCTAATTCAATGTTCTGCTGAACATGAACATTAAGAATCATGAGTGGGCATATAGTATTTTCTTGTACATGGGTTCTTTGGCCTGAGATGACTTCCTGTAGTTTGAGTTTTGTCGTAGAGTCATTGGGGTCATCTGACTATGTGACCTAATTCGAGATCATATAGGGCCATGCGAAGTAATTGCTGAACAAATACCTAGTTTTTTGGATGGAAGATATTTCACCTTTTTCTTTGGCTAAAATGCTTCCTTCCATTGAAGTATCAAAATAATACAGTGCATTTTCCACC

Fln Alignment:

sp_v1.1_unigene7791___GFLYGIGSGVEQSDAKAFLYHHFAAEGGNFQSKMALAYTYYRQQMYEKSVKLYAELASVAVASFLSFNDSPLVEPVRINDGAEENKAALRKSRGEEDDDFQIIEYQAQKGNALAMYKLGIFY
B8LR29______________GFLYEIGSGVEQSDAKAFLYHHFAAEGGNFQSKMALAYTYYRQQMYEKSVKLYAELASVAVASFLSFNESPLVEPVRINDGAEENKEALRKSRGEEDDDFQIIEYQAQKGSAVAMYRLGIFY

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
534		72	27		1.0
1087	83		16		0.994512
1275		85		14	0.993533
1276		85	14		0.993533
1277			14	85	0.993533
1278			14	85	0.993533
1283	87		12		0.992554
1284		87	12		0.992554
1316	87		12		0.992554
1317			12	87	0.992554
1537			10	90	0.90298
1538		10		90	0.90298
1829	15		84		0.999986
1935	33	66			0.997452
1942		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain