SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7789

Length: 849 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7789

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Photosystem II 22 kDa protein, chloroplastic n=7 Tax=Solanaceae RepID=PSBS_SOLLC	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	chloroplast chlorophyll a b-binding protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	nonphotochemical quenching	GO:0010196	Biological Process	93%
Blast2go	photosynthetic membrane	GO:0034357	Cellular Component	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	93%
Blast2go	membrane part	GO:0044425	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	0.0	93%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	0.0	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK12

Fln msg: Distance to subject end: 24 aas,

Fln protein: MGIGVSINTTMAQSVLASRGVSSCVAGIGPFSQRPLPPPPALPVARGLRILLPNASQRSWAMLTELQRANATGLNAGIAKTVALFRPKEKAAAPPKKGRAGRAAVPEEKPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPTPPTGLGRAVIPPGKGFRSAVGLSESGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPITDIEPLVLFN

Protein Length: 284

Fln nts: _-_ATGGGGATCGGTGTCTCCATTAACACAACAATGGCGCAGTCCGTTCTCGCCTCTCGAGGTGTTAGCAGCTGTGTAGCAGGCATCGGACCGTTCAGTCAGAGGCCTCTGCCGCCTCCGCCCGCATTGCCCGTCGCCAGGGGGCTCAGGATTCTGCTGCCAAACGCCTCTCAGAGATCGTGGGCAATGTTGACAGAGCTACAGAGAGCCAATGCCACGGGACTGAACGCTGGAATTGCAAAGACGGTGGCGTTGTTCCGGCCCAAAGAAAAGGCAGCCGCCCCGCCCAAGAAGGGGAGGGCAGGTCGGGCAGCAGTGCCCGAGGAGAAGCCCAAGGTGGAGGACGGCATCTTCGGGACCTCCGGAGGGATCGGTTTCACCAAGGCCAACGAACTGTTCGTGGGCCGCGTCGCCATGATCGGTTTCGCTGCGTCGCTGCTGGGAGAAGCGATAACAGGGAAGGGAATTCTGTCGCAGCTAAATTTGGAGACAGGAATTCCTATATATGAGGCAGAGCCTCTTCTGCTCTTCTTTATTCTCTTCACGCTGCTGGGAGCCATCGGAGCTTTGGGCGACAGAGGGAAGTTTGTGGACGATCCGACTCCCCCTACGGGTCTGGGGAGGGCCGTTATACCGCCCGGAAAGGGCTTCAGATCCGCTGTGGGGCTCTCCGAAAGCGGGCCTCTGTTCGGGTTCACGAAAGCGAACGAGCTGTTCGTGGGGAGGTTGGCGCAGCTGGGAATCGCCTTCTCCATCATCGGGGAGATCATAACAGGGAAGGGAGCGCTGGCGCAGCTCAACATTGAGACGGGAGTTCCCATAACTGACATCGAACCCCTGGTGTTGTTCAAC

Fln Alignment:

sp_v1.1_unigene7789___MAQSVLASRGVSSCVAGIGPFSQRXXXXXXXXXVARGLRILLPNASQRSWAMLTELQRANATGLNAGIAKTVALFXXXXXXXXXXXXXXXXXXXVPEEKPKVEDXXXXXXXXXXXXKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDDPTPPTGLGRAVIPPGKGFRSAVGLSESGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPITDIEPLVLFN
A9NK12______________MAQSVLASGGLSSCVAGIAGFNQRPLPSPPALPVARGLRIRPPNAAQISWSPLTELPSANAAGLNARIARTEALFRPKEKAAAPPKKGRTGRVALPEEKPKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDQTPTTGLEKAVIPPGKGFRSAVGLNESGPLFGFTKSNELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPVSEIEPLVLFN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
46		20		80	0.995493
153			40	60	1.0
165		80		20	0.995493
170		60	40		1.0
205	83			16	0.994512
206		16	83		0.994512
208		83		16	0.994512
340	16		83		0.994512
468		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain