SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7781

Length: 2440 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7781
GTACTACCAAGAAGAATGGCGAGGGCAGCATCCGGCCTTTCATATCCAGATCGGTTCTACGCAGCGGCCGCTTATGCCGGATTTGGCGAATCCGCTAAGCCTGCTAGGAGTTTTTCCGATGAAACAGCTTTGCTTCTCTACGCCCTTTATCAGCAGGCGACTGTTGGACCTTGCAATACCCCGAAGCCTCGAGCCTATAACCTCACGGAGCAGAGCAAGTGGTCCAGCTGGAATGGCCTTGGTAATCTGGCTTCTACAGAGGCAATGAGGCTATTTGTCAAAATCTTGGAGGAGGAAGATCCTGCATGGTACTCGAGGGTTCCTGAGCCTGTGGTGGAAACTGAAGAAAAAAGTTCCGTTTCAGCTTCTAATGGGATTTCAAAAGAAAATGGAGACTCTGTTGAGTCAGAAGATAAGGATATTGTACTGGAAGGTCTACTATCAGTCCGAGCTTATGACCAGTGGGTTGCACCGCCCTTATCTTCTCGGCCCCCAACAGTTCGCTATGAGCACGCAGCGGAAGTGGTGCAGGGAAAAATGTATGTTATTGGCGGTAACTGTAATGGACGCTATCTAAATGATATTCAGATGCTAGATCTAAAGACTCTGAGGTGGTCTAAGATTGAACCAAAGTTGGATCCGGGCTCTCCACCCTCTGTTGAAGCTGATTCTCAAGCAATTTTACCTCCTTGTGCTGGGCATAGTCTGGTCCGATGGGGCACCAAACTTCTTGCTCTGGGTGGGCACACCAAAGATTCTTCTGATACTGTGACAGTTAGGGCGTTTGATACAGAGACATATGCATGGTCTATATTGAAGTCATATGGAAAACCACCATTGGCACGTGGAGGGCAATCAGTGAATCTTGTTGGGTCTACTTTGGTTATGTTTGGTGGAGAGGACTCAAAGAGGCATCTTTTAAATGATCTCCATATTCTTGATTTGGAAACGATGACGTGGGATGCCATTGAAGCTGTGGGCCTGCCTCCAGCACCAAGGTCTGATCACACTGCTGCTGTTCACCTAGATCGATATCTATTGGTCTTTGGAGGCGGTTCTCATTCTACATGTTTCAATGATCTACATGTCCTTGATTTGCAGTCTATGGAGTGGTCTCAACCGCAACTACAGGGTCATCTGGTGACTCCTAGAGCTGGACATGCTGGTGTGGCAGTTGGTGAAAATTGGTATATTGTAGGTGGTGGAGATAATAAGAGTGGTGTGTCTGAGACGCTGGTTTTAAATATGTCTAAGCTTGTTTGGTCTGTGGTAACAACTGTGGAAGGAAGGGTACCAATTGCTAGTGAGGGCCTGAGTCTTGTTTCTGCTTCAATTAATGGAGAAGATATTGTAATTTCTTTTGGTGGTTACAATGGAAGATACAACAATGAGGTAAACATTTTAAAACCAAGTCACAAGGGGACAGCACAGCCTAAGATTGTAGAATCCCCAGCAGCAGCCGCCGCGGCTGCATCAGTTGCAGCTGCTTATGCAGTACCCAAAGTGGTAGTGCCAACATTGGATGGTATCAGGCGTCCAGATGCTGAAGTTGTGGTGCAAGAAAGCAAAGTTAGGGAGATCCTTATGGACAAATCAAATTTAGAGTCTCTGCATCAAAGGAATGATGAAACAAGACAACGGAATATAGCAACATTAAAAGCAGAGAAAGAGGATTTGGAAGCCACACTTTTAACTGTGCAAACAGAGAACTCTGGCCTCAGGCAAAGGCTTAGTGAAGCACAAGCTACACACGATGAGTTAATTAAGGAATTGCAATCTGTACGTGGACAGCTTGCTACTGAACAGTCAAGGTGCTTCAAACTAGAGGTTGATGTTGCAGAGCTGAAGCAAAAACTGCTGTCAATTGAAGGTTTACAGAAGGAGGTAGAGTTGCTTCGACGTGAAAAGTCTGCAGTGGATGAAGCTGCTGCACATGCTACACAGAAGCGAAGCTCGGGTGGAGTTTGGAGTTGGATTGCAGGGACTCCATCTGTCCAGGATTCAGTTTGATTTTAATGCAATCCATTCAAAGTGTGGATTGCATTTTTGCATCAGTGAAAAGAGCTTATTGTTAATTGTTTTAATAAATTATATGCATCATCTCATTTATGTACAGTCCTCTTGGTTAGGCTTTCGAAAAGAGAATATGTAATGGATTGCCCGTCTAACCCTTCTCATTTATTCTCGGAAATTAAATGCTGCTTTTTGGTTGTTACGCAAACAGTTATTAATTTATTCATTGATTGAAGAGGTCTCGTTTTGGAGATAACTGTGAATGATCAGCTAAATGTGTGCACTAGTGGTTGTTTGTCTCATAAATTGAAGTCTAACTTCTCCCAAACGAAACCTTTCAGGTTTTCTCTGTTAAGAACTTGGTATCTACCACAAGCGTCCTGTGATGAAATTATGGAGTAGCTTTAAAGGATACTGCATAGTTACG

Ace file of the UniGene sp_v1.1_unigene7781

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA binding protein, putative	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	acyl- binding	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	72%
Blast2go	lipid transport	GO:0006869	Biological Process	72%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%
Blast2go	cytosol	GO:0005829	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Blast2go	Acyl-CoA-binding protein, ACBP	IPR000582	-	72%
Blast2go	Kelch repeat type 1	IPR006652	-	72%
Blast2go	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	72%
Blast2go	Kelch-type beta propeller	IPR015915	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg:

Fln protein: MARAASGLSYPDRFYAAAAYAGFGESAKPARSFSDETALLLYALYQQATVGPCNTPKPRAYNLTEQSKWSSWNGLGNLASTEAMRLFVKILEEEDPAWYSRVPEPVVETEEKSSVSASNGISKENGDSVESEDKDIVLEGLLSVRAYDQWVAPPLSSRPPTVRYEHAAEVVQGKMYVIGGNCNGRYLNDIQMLDLKTLRWSKIEPKLDPGSPPSVEADSQAILPPCAGHSLVRWGTKLLALGGHTKDSSDTVTVRAFDTETYAWSILKSYGKPPLARGGQSVNLVGSTLVMFGGEDSKRHLLNDLHILDLETMTWDAIEAVGLPPAPRSDHTAAVHLDRYLLVFGGGSHSTCFNDLHVLDLQSMEWSQPQLQGHLVTPRAGHAGVAVGENWYIVGGGDNKSGVSETLVLNMSKLVWSVVTTVEGRVPIASEGLSLVSASINGEDIVISFGGYNGRYNNEVNILKPSHKGTAQPKIVESPAAAAAAASVAAAYAVPKVVVPTLDGIRRPDAEVVVQESKVREILMDKSNLESLHQRNDETRQRNIATLKAEKEDLEATLLTVQTENSGLRQRLSEAQATHDELIKELQSVRGQLATEQSRCFKLEVDVAELKQKLLSIEGLQKEVELLRREKSAVDEAAAHATQKRSSGGVWSWIAGTPSVQDSV*

Protein Length: 666

Fln nts: GTACTACCAAGAAGA_-_ATGGCGAGGGCAGCATCCGGCCTTTCATATCCAGATCGGTTCTACGCAGCGGCCGCTTATGCCGGATTTGGCGAATCCGCTAAGCCTGCTAGGAGTTTTTCCGATGAAACAGCTTTGCTTCTCTACGCCCTTTATCAGCAGGCGACTGTTGGACCTTGCAATACCCCGAAGCCTCGAGCCTATAACCTCACGGAGCAGAGCAAGTGGTCCAGCTGGAATGGCCTTGGTAATCTGGCTTCTACAGAGGCAATGAGGCTATTTGTCAAAATCTTGGAGGAGGAAGATCCTGCATGGTACTCGAGGGTTCCTGAGCCTGTGGTGGAAACTGAAGAAAAAAGTTCCGTTTCAGCTTCTAATGGGATTTCAAAAGAAAATGGAGACTCTGTTGAGTCAGAAGATAAGGATATTGTACTGGAAGGTCTACTATCAGTCCGAGCTTATGACCAGTGGGTTGCACCGCCCTTATCTTCTCGGCCCCCAACAGTTCGCTATGAGCACGCAGCGGAAGTGGTGCAGGGAAAAATGTATGTTATTGGCGGTAACTGTAATGGACGCTATCTAAATGATATTCAGATGCTAGATCTAAAGACTCTGAGGTGGTCTAAGATTGAACCAAAGTTGGATCCGGGCTCTCCACCCTCTGTTGAAGCTGATTCTCAAGCAATTTTACCTCCTTGTGCTGGGCATAGTCTGGTCCGATGGGGCACCAAACTTCTTGCTCTGGGTGGGCACACCAAAGATTCTTCTGATACTGTGACAGTTAGGGCGTTTGATACAGAGACATATGCATGGTCTATATTGAAGTCATATGGAAAACCACCATTGGCACGTGGAGGGCAATCAGTGAATCTTGTTGGGTCTACTTTGGTTATGTTTGGTGGAGAGGACTCAAAGAGGCATCTTTTAAATGATCTCCATATTCTTGATTTGGAAACGATGACGTGGGATGCCATTGAAGCTGTGGGCCTGCCTCCAGCACCAAGGTCTGATCACACTGCTGCTGTTCACCTAGATCGATATCTATTGGTCTTTGGAGGCGGTTCTCATTCTACATGTTTCAATGATCTACATGTCCTTGATTTGCAGTCTATGGAGTGGTCTCAACCGCAACTACAGGGTCATCTGGTGACTCCTAGAGCTGGACATGCTGGTGTGGCAGTTGGTGAAAATTGGTATATTGTAGGTGGTGGAGATAATAAGAGTGGTGTGTCTGAGACGCTGGTTTTAAATATGTCTAAGCTTGTTTGGTCTGTGGTAACAACTGTGGAAGGAAGGGTACCAATTGCTAGTGAGGGCCTGAGTCTTGTTTCTGCTTCAATTAATGGAGAAGATATTGTAATTTCTTTTGGTGGTTACAATGGAAGATACAACAATGAGGTAAACATTTTAAAACCAAGTCACAAGGGGACAGCACAGCCTAAGATTGTAGAATCCCCAGCAGCAGCCGCCGCGGCTGCATCAGTTGCAGCTGCTTATGCAGTACCCAAAGTGGTAGTGCCAACATTGGATGGTATCAGGCGTCCAGATGCTGAAGTTGTGGTGCAAGAAAGCAAAGTTAGGGAGATCCTTATGGACAAATCAAATTTAGAGTCTCTGCATCAAAGGAATGATGAAACAAGACAACGGAATATAGCAACATTAAAAGCAGAGAAAGAGGATTTGGAAGCCACACTTTTAACTGTGCAAACAGAGAACTCTGGCCTCAGGCAAAGGCTTAGTGAAGCACAAGCTACACACGATGAGTTAATTAAGGAATTGCAATCTGTACGTGGACAGCTTGCTACTGAACAGTCAAGGTGCTTCAAACTAGAGGTTGATGTTGCAGAGCTGAAGCAAAAACTGCTGTCAATTGAAGGTTTACAGAAGGAGGTAGAGTTGCTTCGACGTGAAAAGTCTGCAGTGGATGAAGCTGCTGCACATGCTACACAGAAGCGAAGCTCGGGTGGAGTTTGGAGTTGGATTGCAGGGACTCCATCTGTCCAGGATTCAGTTTGA___TTTTAATGCAATCCATTCAAAGTGTGGATTGCATTTTTGCATCAGTGAAAAGAGCTTATTGTTAATTGTTTTAATAAATTATATGCATCATCTCATTTATGTACAGTCCTCTTGGTTAGGCTTTCGAAAAGAGAATATGTAATGGATTGCCCGTCTAACCCTTCTCATTTATTCTCGGAAATTAAATGCTGCTTTTTGGTTGTTACGCAAACAGTTATTAATTTATTCATTGATTGAAGAGGTCTCGTTTTGGAGATAACTGTGAATGATCAGCTAAATGTGTGCACTAGTGGTTGTTTGTCTCATAAATTGAAGTCTAACTTCTCCCAAACGAAACCTTTCAGGTTTTCTCTGTTAAGAACTTGGTATCTACCACAAGCGTCCTGTGATGAAATTATGGAGTAGCTTTAAAGGATACTGCATAGTTACG

Fln Alignment:

sp_v1.1_unigene7781___MARAASGLSYPDRXXXXXXXXXXXESAKPARS----FSDETXXXXXXXXXXXTVGPCNTPKPRAYNLTEQSKWSSWNGLGNLASTEAMRLFVKILEEEDPAWYSRVPE----PVVETEEKS---------SVSASNGISKENGDSVESEDKDIVLEGLLSVRAYDQWVAPPLSSRPPTVRYEHAAEVVQGKMYVIGGNCNGRYLNDIQMLDLKTLRWSKIEPKLDPGSPPSVEADSQAILPPCAGHSLVRWGTKLLALGGHTKDSSDTVTVRAFDTETYAWSILKSYGKPPLARGGQSVNLVGSTLVMFGGEDSKRHLLNDLHILDLETMTWDAIEAVGLPPAPRSDHTAAVHLDRYLLVFGGGSHSTCFNDLHVLDLQSMEWSQPQLQGHLVTPRAGHAGVAVGENWYIVGGGDNKSGVSETLVLNMSKLVWSVVTTVEGRVPIASEGLSLVSASINGEDIVISFGGYNGRYNNEVNILKPSHKGTAQPKIVESXXXXXXXXXXXXXXXXXXXXXXTLDGIRRPDAEVVVQESKVREILMDKSNLESLHQRNDETRQRNIATLKAEKEDLEATLLTVQTENSGLRQRLSEAQATHDELIKELQSVRGQLATEQSRCFKLEVDVAELKQKLLSIEGLQKEVELLRREKSAVDEAAAHATQKRSSGGVWSWIAGTPSVQDSV
C0PPX6______________MARSSSAMAYPDRFYAAAAYAGLGSSQDSSKAAISRFQNENALLLYGLYQQATVGPCNVSKPRSWNPIEHSKWTSWNNLGNMPSQEAMRLFVKILEEEDPAWYSKVPESAPEPEVEVEKPSKESAFHHDNSVSVPKDTAIDNGSFVETQDKDVILEGLGSVAVYDQWVSLSVTGRQLKARYEHAAAVVQEKMYVFGGNHNGRYLNDLQVLDLKSLMWSKVDTKMASDS-------SQELLSPCAGHCLIQWGNKILAVAGHTKDPSDIVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLNDLNILDLETMTWDAIEAVGTPPSPRSDHTATVHANRYLLIFGGGSHSTCFNDLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVTIGENWYIVGGGDNKSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVVTSNNGEDILVAFGGYNGRYSNEVHVLKPSHKGMLQQKMLES-----------SAGASVDPVLPTSNGVRDIEYEDLAQDGKVREIVMDNPQSDSMLQKSDEAKERIIVSLKEDKDNLEATLSAEHSLTSRLKQELAEAQTANADLTEELRSVRGQLASEQSRCFRLEVDVAELRQKMQQMEALQKEVELLQRQKAASDQAAANAARRQSSGGVWSWIAGSPPDAKSV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
153		87	12		0.992554
154	87		12		0.992554
196		85		14	0.993533
491		12	87		0.992554
777	10		90		0.90298
779			10	90	0.90298
780	90		10		0.90298
792	88		11		0.923564
1175	25		75		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain