SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7766

Length: 2641 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7766
CTTTGGACCAACTTTATTCATGTTGTTGGGATATGGGCCAGCAGTGGCAGCTTTAACATATTGCCTTACATTCCTTTTTACTGATTATTCTGTTGCCCAAAATGTGGTGTTGCTGGTACATTTTTTCAGTGGCCTTGTTCTTATGGTCATCTCATTCATTATGGGTCTCATCCGTGCAACCAAACATGCAAACTCATTACTTAAGAACTTTTTCAGGGTATCACCAGGATTCTGCCTTGCTGACGGACTTGCATCCCTTGCGTTGCGAAGGCAAGGTATGAAGCTTGGATCTGGAGAGGGACCTCTAGATTGGAATGTAACTGGTGCATCTGTATTTTATCTACTTTTGGAGAGTGTTATATATTTCATATTTGTTCTTGGGTTTGACCTCCTGCCTGGTCCATCTATCTGTTGGGCTTCAATAAGATCTTGGTGTACATGGCTGGTGGGTAACAAGCGCTATTTACTATGGCCAAAGGGTCTTACGGAGCCTTTCATTGTTTCTTCTGTTGAAGCACATGATTCAACAGAAGAAACAATGAAAGGCTCCGTAAGACCCTTTCATTGTTTCTTCTGTTGAATCACATGCTTCAAATTTTGAGGATGAGGATGAAGATGTAACGGCAGAGAGGGTGAGAGTTCTATCTGGTGCAGCGAAAGACAGCATAATTTACCTACAGAATCTCAGAAAGATATATCCATCAAGTGGAAATCAGCCAGAGAAGGTTGCAGTTGATTCCTTGAGCTTTGCAGTTCAAGAAGGAGAGTGTTTTGGATTTCTCGGCACAAATGGTGCTGGAAAGAGTACAACACTGTCAATGCTATGTGGCGAAGAGCATCCTACGGGAGGAACTGCATAAAATTGTTTGGCAAGGATATTCTTGCACATCCAAAGGCAGCACATCAGCATGTAGGTTATTGTCCTCAGTTTGATGCCCTTCTAGAGTTACTTACTGTTCGAGAACATCTCGAGCTCTATGCACGGATCAAGGGAGTTTCAAAGGAAATATTAGATCAAGTTGTCGAAGGAAAGCTCGCAGAATTTGATTTATGGCCACAAGCAAACAAACCTTCCTGTTCTCTAAGTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTATGGACCCTATTGCAAAGCGATTTATGTGGGATGTCATCTCACGTATATCAACTAGGCAAGGGAAAACAGCAGTTATCCTGACAACACATAGCATGAATGAAGCACAGGCCCTTTGTACACGCATTGGAATTATGGTTGGGGGGCGGCTCTGTTGTCTTGGAAGTCCTCAACATTTGAAAACACGCTTTGGCAACTATCTTGAACTTGAGGTGAAACCTGTGGATGTTAGTGTGGTGGAATTAGATAACTTGTGCAATACTCTACATGATATGTTTTTTGACTTTCCGAGCCATTCTAGAGGTATCTTGAGTGATCTGGAAATTTGTATTGGAGGATCAGAGGCTGGCTCCTCCACTCACATGTCAGAAACTAATTTGTCACATGAAATGATCATTGTTGCGGGGCGTAGACTAGGCAATGAGGAGTATGTGCAAAACCTAATTTCAAACAGCCCTTGCATCGATGGAGTTTTTAGTGAGCAATTATCAGAACAATTATTCCGTGATGGTGGCATTCCATTGAGGGTTTTTTGTGAGTGGTGGCTAGCAAAAGAGCATGTAGCAAGAATCAATTCTTTTGTTTTTTCATCATTTCCTGGTGCAACGTTTCAAGGGCGCAATGGCTACAGCCTTAGTTATCAGCTACCTTATCGAGAAGGGGCATCTCTTGCAGACATATTTGGTCATTTGGAAATGAACAGAGAAATAGCTGGTATTGCTGAATATAGCATTGGTCAGTCGACGTTGGAGACGATTTTCAATCATTTTGCCGCAAACCAGTAAGGAAGCTTAAGTTTCAACTTAGGCTTTTAATGGTGTAGTAGAAAACGTTAGTTATAACTTATGTGGCGTCTAGCTGCAAACATTTTCAAGATGAAGATAGAATATGTGATTTTGTAAAAAGTAGAGGTTAATTTGATTTTTGACAACTAAACAGGATAATGTGAGATATATGTAATATAGTGGCCCCTCAAATATTTATGGATAGTGAAGACCTGCATTAGACATAATCTGTACCTTTTATGCTTCTATTGCATTACCAGATTTGCAGCTCACTCATATCTTGCCGTTTGGCAGTGAAAAGCCTTTTGACAATAAAAAATTTGTAGCTTCTGGAATTTCTGTTAACCCAGATTCTATACCTCCACTTCTTGTATTACTACTCAAATTAGAGATCTTCAGGTAATGAAAAGGAAATCAGATCAGGAACACAGCAATTGGTCTTTCAATTTGTACACAATTAAAGATGTACATAAATTCTTCATTTACGTGAGGAGCTCCTGTACTCTATGTATGTATTTGAAGTATAATCTAGTCACGCACACATGCTATCTACAAGAATACAAAGGATAACCACTTGCATTGCCTTGTTAGCTACGGTGCAGTCTACTCAATTGTAGTCTTTTGTCATCGAGAAATTAGAAACGAGAAATTCTCTATGGAAGATTTTGTAAGTGAACTTATCTGTAG

Ace file of the UniGene sp_v1.1_unigene7766

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter A family member 1 n=1 Tax=Arabidopsis thaliana RepID=AB1A_ARATH	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	atp-binding cassette superfamily	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	69%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	69%
Blast2go	Thiamine metabolism	00730	69%
Blast2go	Metabolic pathways	01100	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter-like	IPR003439	-	0.0	69%
Blast2go	ABC transporter, conserved site	IPR017871	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Separated hits, possible frame ERROR between 857 and 911, Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 30 aas, your sequence is shorter than subject: 651 - 788

Fln protein: LDQLYSCCWDMGQQWQL*HIALHSFLLIILLPKMWCCWYIFSVALFLWSSHSLWVSSVQPNMQTHYLRTFSGYHQDSALLTDLHPLRCEGKV*SLDLERDL*IGM*LVHLYFIYFWRVLYISYLFLGLTSCLVHLSVGLQ*DLGVHGWWVTSAIYYGQRVLRSLSLFLLLKHMIQQKKQ*KAP*DPFIVSSVESHASNFEDEDEDVTAERVRVLSGAAKDSIIYLQNLRKIYPSSGNQPEKVAVDSLSFAVQEGECFGFLGTNGAGKSTTLSMLCGEEHPTGGTxxxxxxxxxxxxxxxxxxxVGYCPQFDALLELLTVREHLELYARIKGVSKEILDQVVEGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVISRISTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLCCLGSPQHLKTRFGNYLELEVKPVDVSVVELDNLCNTLHDMFFDFPSHSRGILSDLEICIGGSEAGSSTHMSETNLSHEMIIVAGRRLGNEEYVQNLISNSPCIDGVFSEQLSEQLFRDGGIPLRVFCEWWLAKEHVARINSFVFSSFPGATFQGRNGYSLSYQLPYREGASLADIFGHLEMNREIAGIAEYSIGQSTLETIFNHFAANQ*

Protein Length: 652

Fln nts: CTTTGGACCAACTTTATTCATGTTGTTGGGATATGGGCCAGCAGTGGCAGCTTTAACATATTGCCTTACATTCCTTTTTACTGATTATTCTGTTGCCCAAAATGTGGTGTTGCTGGTACATTTTTTCAGTGGCCTTGTTCTTATGGTCATCTCATTCATTATGGGTCTCATCCGTGCAACCAAACATGCAAACTCATTACTTAAGAACTTTTTCAGGGTATCACCAGGATTCTGCCTTGCTGACGGACTTGCATCCCTTGCGTTGCGAAGGCAAGGTATGAAGCTTGGATCTGGAGAGGGACCTCTAGATTGGAATGTAACTGGTGCATCTGTATTTTATCTACTTTTGGAGAGTGTTATATATTTCATATTTGTTCTTGGGTTTGACCTCCTGCCTGGTCCATCTATCTGTTGGGCTTCAATAAGATCTTGGTGTACATGGCTGGTGGGTAACAAGCGCTATTTACTATGGCCAAAGGGTCTTACGGAGCCTTTCATTGTTTCTTCTGTTGAAGCACATGATTCAACAGAAGAAACAATGAAAGGCTCCGTAAGACCCTTTCATTGTTTCTTCTGTTGAATCACATGCTTCAAATTTTGAGGATGAGGATGAAGATGTAACGGCAGAGAGGGTGAGAGTTCTATCTGGTGCAGCGAAAGACAGCATAATTTACCTACAGAATCTCAGAAAGATATATCCATCAAGTGGAAATCAGCCAGAGAAGGTTGCAGTTGATTCCTTGAGCTTTGCAGTTCAAGAAGGAGAGTGTTTTGGATTTCTCGGCACAAATGGTGCTGGAAAGAGTACAACACTGTCAATGCTATGTGGCGAAGAGCATCCTACGGGAGGAACTGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTAGGTTATTGTCCTCAGTTTGATGCCCTTCTAGAGTTACTTACTGTTCGAGAACATCTCGAGCTCTATGCACGGATCAAGGGAGTTTCAAAGGAAATATTAGATCAAGTTGTCGAAGGAAAGCTCGCAGAATTTGATTTATGGCCACAAGCAAACAAACCTTCCTGTTCTCTAAGTGGTGGCAATAAACGCAAGTTATCAGTGGCCATAGCAATGATTGGAGATCCTCCTCTCGTCATTTTAGATGAACCTTCAACGGGTATGGACCCTATTGCAAAGCGATTTATGTGGGATGTCATCTCACGTATATCAACTAGGCAAGGGAAAACAGCAGTTATCCTGACAACACATAGCATGAATGAAGCACAGGCCCTTTGTACACGCATTGGAATTATGGTTGGGGGGCGGCTCTGTTGTCTTGGAAGTCCTCAACATTTGAAAACACGCTTTGGCAACTATCTTGAACTTGAGGTGAAACCTGTGGATGTTAGTGTGGTGGAATTAGATAACTTGTGCAATACTCTACATGATATGTTTTTTGACTTTCCGAGCCATTCTAGAGGTATCTTGAGTGATCTGGAAATTTGTATTGGAGGATCAGAGGCTGGCTCCTCCACTCACATGTCAGAAACTAATTTGTCACATGAAATGATCATTGTTGCGGGGCGTAGACTAGGCAATGAGGAGTATGTGCAAAACCTAATTTCAAACAGCCCTTGCATCGATGGAGTTTTTAGTGAGCAATTATCAGAACAATTATTCCGTGATGGTGGCATTCCATTGAGGGTTTTTTGTGAGTGGTGGCTAGCAAAAGAGCATGTAGCAAGAATCAATTCTTTTGTTTTTTCATCATTTCCTGGTGCAACGTTTCAAGGGCGCAATGGCTACAGCCTTAGTTATCAGCTACCTTATCGAGAAGGGGCATCTCTTGCAGACATATTTGGTCATTTGGAAATGAACAGAGAAATAGCTGGTATTGCTGAATATAGCATTGGTCAGTCGACGTTGGAGACGATTTTCAATCATTTTGCCGCAAACCAGTAAGGAAGCTTAAGTTTCAACTTAGGCTTTTAATGGTGTAGTAGAAAACGTTAGTTATAACTTATGTGGCGTCTAGCTGCAAACATTTTCAAGATGAAGATAGAATATGTGATTTTGTAAAAAGTAGAGGTTAATTTGATTTTTGACAACTAAACAGGATAATGTGAGATATATGTAATATAGTGGCCCCTCAAATATTTATGGATAGTGAAGACCTGCATTAGACATAATCTGTACCTTTTATGCTTCTATTGCATTACCAGATTTGCAGCTCACTCATATCTTGCCGTTTGGCAGTGAAAAGCCTTTTGACAATAAAAAATTTGTAGCTTCTGGAATTTCTGTTAACCCAGATTCTATACCTCCACTTCTTGTATTACTACTCAAATTAGAGATCTTCAGGTAATGAAAAGGAAATCAGATCAGGAACACAGCAATTGGTCTTTCAATTTGTACACAATTAAAGATGTACATAAATTCTTCATTTACGTGAGGAGCTCCTGTACTCTATGTATGTATTTGAAGTATAATCTAGTCACGCACACATGCTATCTACAAGAATACAAAGGATAACCACTTGCATTGCCTTGTTAGCTACGGTGCAGTCTACTCAATTGTAGTCTTTTGTCATCGAGAAATTAGAAACGAGAAATTCTCTATGGAAGATTTTGTAAGTGAACTTATCTGTAG

Fln Alignment:

sp_v1.1_unigene7766___SNFEDEDEDVTAERVRVLSGAAKDSI-----IYLQNLRKIYPSSGNQ---------PEKVAVDSLSFAVQEGECFGFLGTNGAGKSTTLSMLCGEEHPTGGTAxxxxxxxxxxxxxxxxxxVGYCPQFDALLELLTVREHLELYARIKGVSKEILDQVVEGKLAEFDLWPQANKPSCSLSGGNKRKLSVAIAMIGDPPLVILDEPSTGMDPIAKRFMWDVISRISTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLCCLGSPQHLKTRFG
C0PRA1______________SESSPDDEDVATEESLVRQQVTENTLGSNVAVQVRGLLKTFPGIRNMVGCCKCRKTAPHHAVKGLWINIEKDKLFCLLGPNGAGKTTTINCLTGITPITAGDAxxxxxxxxxxxxxxxxxxMGVCPQFDILWDALSAQEHLYLFAGIKGMPRPAIKSDAENLLSQVKLSEAAHIRAGSYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPVTRRYVWDIIE--DAKKGR-AIVLTTHSMEEADILSDRIAIMARGKLRCIGTSVRLKSRFG

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1954		85		14	0.993533
1960	85		14		0.993533
1987		14		85	0.993533
2137	90		10		0.90298
2138			10	90	0.90298
2139	90		10		0.90298
2195		90	10		0.90298
2197		10		90	0.90298
2198			10	90	0.90298
2200	90		10		0.90298
2201	10			90	0.90298
2202		10	90		0.90298
2206		90	10		0.90298
2207			10	90	0.90298
2208	90	10			0.90298
2210			10	90	0.90298
2211			90	10	0.90298
2214		10		90	0.90298
2218	10	90			0.90298
2395	12			87	0.992554
2396	12			87	0.992554
2571	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain