SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7754

Length: 1238 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7754 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=2 Tax=Picea sitchensis RepID=B8LMJ5_PICSI	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ubiquitin-conjugating enzyme	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	91%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	91%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMJ5

Fln msg:

Fln protein: MIKLFKVKEKQREAAASANGRAPVKKQSAGELRLHKDISELNLPKTTIISFPNGKDDLMNFEVTIRPDEGYYVGGSFTFTFSVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLNHLFTHPNHEDPLNHDAAAVLRDNPRAFETNVRRAMAGGYVGSSYFSRCI*

Protein Length: 185

Fln nts: ATGGGGAATAAAAGGTGCAGGGAGGAACACCAGGTGGGTAAGGATTCTTGTTTCCTCTATTCTCCTCTCCTCGCGAAAGGATTCATTGGGCGACAGAGTTCTGTTTTCTGGATCGTCGGGTTTCGAATCGCTGGGCTTCAAATTTGATTGGTGCTGAATTTCAGCTCCGCTCACTCAGGTATA_-_ATGATTAAACTATTTAAAGTAAAGGAGAAGCAGAGGGAGGCTGCTGCAAGTGCCAACGGACGAGCCCCAGTAAAGAAGCAAAGTGCTGGTGAACTGCGGTTGCACAAAGATATCAGTGAGTTGAACCTGCCCAAGACCACAATCATTTCTTTTCCAAATGGCAAAGACGATCTTATGAACTTTGAAGTCACTATTCGGCCTGATGAAGGTTATTATGTAGGGGGGTCCTTCACGTTCACATTCAGTGTATCTCCTATTTACCCTCATGAGGCACCAAAGGTGAAATGCAAAACGAAGGTTTATCATCCAAATATTGATTTGGAGGGAAATGTTTGCCTCAATATTCTGCGGGAGGACTGGAAACCTGTTCTGAACATCAACACCATCATCTATGGGCTGAATCATCTTTTCACGCATCCAAACCATGAAGATCCTCTGAACCATGATGCTGCGGCAGTCTTGAGAGATAACCCTAGGGCATTTGAAACAAATGTAAGAAGGGCCATGGCAGGGGGTTATGTGGGATCTAGCTATTTCTCAAGATGTATTTGA___CGCTCCTTGATATTTTAATAAAGATTTATAATGTAATTCTAAAAGGATGCCAGCCCGGTTTGCATCATAAGCTTTTTTGGGAGCAGTTCTTAATTTCACAACTTGGATTGAACAGATATTTGCAAATTTCATTGTTCTTGAAAACTATTTTCATTGACAAGATTGTGGTTTGGCAGGAGAGGTTTCTGTCTATGTAATTTAGTATTCTGGAGTTTAAAATTTGGGCTGATAGGGCAAGTTGGTGGTTGACTATTTGAGAAATCTCGTGCTGTTCTTGTGAATATGTAATTGTTTTTAAATTTCTTTTCATGGAATTGGACCCTTGATGAGTCTTAATATGTGTACTGAGTCAGAAGGGTCTCTTGCAGAGTCTAGATTTTAAGCTGCCAAGGCATTTAGCGCTTGACATGATCGAATGTTGAATGTTCGTTTGGAATCGCAACTGATTTGTTTCTTGGAATTAATGAAAGTGATCTTTCGAAATATGCAAATGCAGAAGATAG

Fln Alignment:

sp_v1.1_unigene7754___MIKLFKVKEKQREAAASANGRAPVKKQSAGELRLHKDISELNLPKTTIISFPNGKDDLMNFEVTIRPDEGYYVGGSFTFTFSVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLNHLFTHPNHEDPLNHDAAAVLRDNPRAFETNVRRAMAGGYVGSSYFSRCI
B8LMJ5______________MIKLFKVKEKQREAAASANGRAPVKKQSAGELRLHKDISELNLPKTTSISFPNGKDDLMNFEVTIRPDEGYYVGGSFTFTFSVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLNHLFSHPNHEDPLNHDAAAVLRDNPRAFETNVRRAMAGGYVGSSYFSRCI

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
167	25	75			0.996473
316		88	11		0.923564
319	88			11	0.923564
320	88		11		0.923564
323	11	88			0.923564
324			11	88	0.923564
326		11		88	0.923564
327	11	88			0.923564
328	11	88			0.923564
329			11	88	0.923564
331		88		11	0.923564
334	88		11		0.923564
337		88	11		0.923564
376	76			23	1.0
377	76		23		1.0
378	23			76	1.0
379		23		76	1.0
380	23			76	1.0
383	76	23			1.0
386			23	76	1.0
387	76		23		1.0
390	21			78	1.0
391		21	78		1.0
392			21	78	1.0
393	21			78	1.0
395	78		21		1.0
541	14	85			0.999981
638	12		87		0.992554
656		12		87	0.992554
925		3	96		0.980996
929			96	3	0.980996
934	96		3		0.982166
1152	95	5			0.997749
1180	5			94	0.998744
1200	38	57		4	1.0
1201		57	42		1.0
1203	9	47		42	1.0
1204	57		42		1.0
1205	4	38	4	52	1.0
1207	11			88	0.991528
1209		11	88		0.991528
1210		11		88	0.991528
1212			11	88	0.991528
1216			12	87	0.992554
1217	14	85			0.993533
1219		50	16	16	0.988986
1220		20		80	0.995493
1221	20		60		0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain