SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7752

Length: 2467 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7752
ATGGGGAAGATAAAAGAACTGATATATTACCTCGTTTCTGGGTCCGGAGTCTTGGTGCTATTATTAGCCAACAACATTAACCAGTCAGAGGATCTCTCCGGCAAAGGGTCTGTAACATGCCAGCCAAATGCTTTTCGGTCCAACAATGGGTATAAAGCATGAAACGAGATGGCACTCATTTTTGGCTTAGTTGTTGGCCAGACGTTTGCACTAAAATAAAAAACACTTGAGAAGGGGACGTGTTGAATCTTCTTCCTGCACGAAGCTTCCTCCCTCCTTCCGTTTTAGAATTCTTCCCCATTCTTATATTCTGAGACCCAGAGTTTGAATATGCAACTTGGGTCTAATTTTTTATGTATCTGTCTTGTGTCGTTGAATTGGCGTTTTGATGAATGCCCCATGTTCTGCAACTATTGATTCACTGGCACAATTGCAATTCTCGGGAGGACTAGTTTGTGAGAGGATCTCTGCTCTGATTACTTCATGTGTCAAGTGGACCGACATTCTTTGCAGGGGATAAACGACAGTTGGGACGGACTGCCAGCTACGACTTCTGTACAAATGGCCGAAGTTCCAGAGTCAACACATGCAAATGGAGATCGAAATCAATATGAAATGGTTGATATGGCTTATGTAGAAAGTGAAAGTGAGGCTGAAAGGCTTGTGCGTAGTTGCGCTGACAGAGCTCATAAATTAAAGAGAACTGTTGATGCGTCACTGGATGATGTGCACCACTGCTCAATTTTTGGCGGGCTAAGATATAGTGTATGGAGGAGCATAGCTGTGGTCTTACTCCACAACAAGATTAATTTGTTGTTGCCTTTCGGGCCTGCTGCTGCTATTGCGGCTTCATGCAATGTGAAACATGGTTGGGTGTTTCTGTTCAGCCTGTTAGGCATAGCTCCTTTGGCCGAACGACTTGGTTTTCTGACAGAGCAGCTATCATTTTACACTGGTGCTACAGTTGGAGGTCTTTTAAATGCTACTTTTGGGAATGCCACTGAGATGATCATTTCAATTTATGCCCTAAGGAATGGGATGATGCGTGTTGTACAACAATCATTGCTGGGTTCCATACTGTCAAATATGTTGCTTGTGCTTGGAACCGCCTTTTTAGCTGGTGGTATCGTACACAATAAGAAAGATCAAACTTTTAACAAGGCAACTGCTGTTGTTAATTCGGGATTATTGCTGATGGCTGTTATGGGCCTGCTTTTCCCAGCTGTGCTGCACTTTACTCATACAGAACTCCATGCTGGTCAATCAGAGTTAGCTCTTTCAAGGTTTACAAGCTGTGTCATGCTTGTAGCATATGCATCTTACCTTGTCTTTCAATTGAAGAGTCATCGAGATCTTTATGGTTGTGGTACTGAGGGTGAGGGGAATGATGGAGGGTCAGAGGAAGACAATCTTCCAGAGCTAACATTGTGGGAAGCAGTATTATGGCTGGCTATAGTGACTGCATTTGTTTCTTTTCTGTCCGGTTATCTTGTTAATACAATGAAGGGGGCATCTGATAACTGGAAAGTGTCAGTTTCCTTTATGAGCGTTATCTTGCTTCCATTAGTTGGGAATGCTGCAGAGCATGCAAGTGCAGTAATGTTTGCCATGAAAGATAAACTGGACATTTCTTTAGGTGTTGCAATTGGATCCTCAACACAAATATCAATGTTTATGATTCCATTTTGTGTTGTCGTTGGCTGGATCATGGGAAAACCTATGGATCTGAACTTTCAGCTCTTTGAGACTGCCACACTCTTTATCACAGTTCTTGTGGTAGCATTCATGCTTCAGGAAGGTACATCAAACTATTTTAAAGGGTTGATGCTAATGTTATGCTACTTGATAGTTTCTGCAAGCTTCTTTGTGCATACTGACTATAAAATGGGTGATAACGTCTAGGGGACAGCTTCCGTGAATGACGGAATTAGATTTGGAGCTCCAGAGAATAGCTAAAATGAGTTATTTTTTAAAATTCGATCGAGAAAGCATGTTATGGTTGGCACTTCATTGGGCTATAGGAGCAACTTTATGCCTACAACTGAAGGATGATCACTGCATGGCTTGCTGCTCCTAAGTTTTAGTTTTGTTGGAATTGGTTCTCTGGCATTGTTTCTGCCTTGCAATTATCTCTTTTCAATTCATCTTGCCAGTCTCTTAAATGTAATTAGCTACCATGTTGCAAGAGTGGGTCTCTTGATGCTCCAAAAGTGAGACATTTGTATCTTCTGGGAGTAACAAGTTGCTGTAGTTGGTATTGAATTTGGTGTTTAAGTGGCTACAGTGGTATGTGAGGAGGTATATTGTAAATTCTGCTGTACAGATGAAATGGTGCTGGCAATATATAGATATTTCTATATATATTTCCCCTACGAAAGAATAATGAATTAACAGTAGGGCTTAAGGTGATATAAGATTCATTCCAATTCAGCTTGGTTTTATGTGCAAGAATTTTGACAGCAGATCA

Ace file of the UniGene sp_v1.1_unigene7752

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	H+/Ca2+ exchanger 2 n=1 Tax=Ipomoea nil RepID=Q9ZQT4_IPONI	-	-	75%
FL-Next	sp=Vacuolar cation/proton exchanger 2; Oryza sativa subsp. japonica (Rice).	-	-	71%
Blast2go	vacuolar cation proton	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium/proton exchanger	IPR004713	-	84%
Blast2go	Calcium/proton exchanger superfamily	IPR004798	-	84%
Blast2go	Sodium/calcium exchanger membrane region	IPR004837	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5KQN0

Fln msg: your sequence is longer than subject: 473 - 437

Fln protein: MCQVDRHSLQGINDSWDGLPATTSVQMAEVPESTHANGDRNQYEMVDMAYVESESEAERLVRSCADRAHKLKRTVDASLDDVHHCSIFGGLRYSVWRSIAVVLLHNKINLLLPFGPAAAIAASCNVKHGWVFLFSLLGIAPLAERLGFLTEQLSFYTGATVGGLLNATFGNATEMIISIYALRNGMMRVVQQSLLGSILSNMLLVLGTAFLAGGIVHNKKDQTFNKATAVVNSGLLLMAVMGLLFPAVLHFTHTELHAGQSELALSRFTSCVMLVAYASYLVFQLKSHRDLYGCGTEGEGNDGGSEEDNLPELTLWEAVLWLAIVTAFVSFLSGYLVNTMKGASDNWKVSVSFMSVILLPLVGNAAEHASAVMFAMKDKLDISLGVAIGSSTQISMFMIPFCVVVGWIMGKPMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLMLCYLIVSASFFVHTDYKMGDNV*

Protein Length: 474

Fln nts: ATGGGGAAGATAAAAGAACTGATATATTACCTCGTTTCTGGGTCCGGAGTCTTGGTGCTATTATTAGCCAACAACATTAACCAGTCAGAGGATCTCTCCGGCAAAGGGTCTGTAACATGCCAGCCAAATGCTTTTCGGTCCAACAATGGGTATAAAGCATGAAACGAGATGGCACTCATTTTTGGCTTAGTTGTTGGCCAGACGTTTGCACTAAAATAAAAAACACTTGAGAAGGGGACGTGTTGAATCTTCTTCCTGCACGAAGCTTCCTCCCTCCTTCCGTTTTAGAATTCTTCCCCATTCTTATATTCTGAGACCCAGAGTTTGAATATGCAACTTGGGTCTAATTTTTTATGTATCTGTCTTGTGTCGTTGAATTGGCGTTTTGATGAATGCCCCATGTTCTGCAACTATTGATTCACTGGCACAATTGCAATTCTCGGGAGGACTAGTTTGTGAGAGGATCTCTGCTCTGATTACTTC_-_ATGTGTCAAGTGGACCGACATTCTTTGCAGGGGATAAACGACAGTTGGGACGGACTGCCAGCTACGACTTCTGTACAAATGGCCGAAGTTCCAGAGTCAACACATGCAAATGGAGATCGAAATCAATATGAAATGGTTGATATGGCTTATGTAGAAAGTGAAAGTGAGGCTGAAAGGCTTGTGCGTAGTTGCGCTGACAGAGCTCATAAATTAAAGAGAACTGTTGATGCGTCACTGGATGATGTGCACCACTGCTCAATTTTTGGCGGGCTAAGATATAGTGTATGGAGGAGCATAGCTGTGGTCTTACTCCACAACAAGATTAATTTGTTGTTGCCTTTCGGGCCTGCTGCTGCTATTGCGGCTTCATGCAATGTGAAACATGGTTGGGTGTTTCTGTTCAGCCTGTTAGGCATAGCTCCTTTGGCCGAACGACTTGGTTTTCTGACAGAGCAGCTATCATTTTACACTGGTGCTACAGTTGGAGGTCTTTTAAATGCTACTTTTGGGAATGCCACTGAGATGATCATTTCAATTTATGCCCTAAGGAATGGGATGATGCGTGTTGTACAACAATCATTGCTGGGTTCCATACTGTCAAATATGTTGCTTGTGCTTGGAACCGCCTTTTTAGCTGGTGGTATCGTACACAATAAGAAAGATCAAACTTTTAACAAGGCAACTGCTGTTGTTAATTCGGGATTATTGCTGATGGCTGTTATGGGCCTGCTTTTCCCAGCTGTGCTGCACTTTACTCATACAGAACTCCATGCTGGTCAATCAGAGTTAGCTCTTTCAAGGTTTACAAGCTGTGTCATGCTTGTAGCATATGCATCTTACCTTGTCTTTCAATTGAAGAGTCATCGAGATCTTTATGGTTGTGGTACTGAGGGTGAGGGGAATGATGGAGGGTCAGAGGAAGACAATCTTCCAGAGCTAACATTGTGGGAAGCAGTATTATGGCTGGCTATAGTGACTGCATTTGTTTCTTTTCTGTCCGGTTATCTTGTTAATACAATGAAGGGGGCATCTGATAACTGGAAAGTGTCAGTTTCCTTTATGAGCGTTATCTTGCTTCCATTAGTTGGGAATGCTGCAGAGCATGCAAGTGCAGTAATGTTTGCCATGAAAGATAAACTGGACATTTCTTTAGGTGTTGCAATTGGATCCTCAACACAAATATCAATGTTTATGATTCCATTTTGTGTTGTCGTTGGCTGGATCATGGGAAAACCTATGGATCTGAACTTTCAGCTCTTTGAGACTGCCACACTCTTTATCACAGTTCTTGTGGTAGCATTCATGCTTCAGGAAGGTACATCAAACTATTTTAAAGGGTTGATGCTAATGTTATGCTACTTGATAGTTTCTGCAAGCTTCTTTGTGCATACTGACTATAAAATGGGTGATAACGTCTAG___GGGACAGCTTCCGTGAATGACGGAATTAGATTTGGAGCTCCAGAGAATAGCTAAAATGAGTTATTTTTTAAAATTCGATCGAGAAAGCATGTTATGGTTGGCACTTCATTGGGCTATAGGAGCAACTTTATGCCTACAACTGAAGGATGATCACTGCATGGCTTGCTGCTCCTAAGTTTTAGTTTTGTTGGAATTGGTTCTCTGGCATTGTTTCTGCCTTGCAATTATCTCTTTTCAATTCATCTTGCCAGTCTCTTAAATGTAATTAGCTACCATGTTGCAAGAGTGGGTCTCTTGATGCTCCAAAAGTGAGACATTTGTATCTTCTGGGAGTAACAAGTTGCTGTAGTTGGTATTGAATTTGGTGTTTAAGTGGCTACAGTGGTATGTGAGGAGGTATATTGTAAATTCTGCTGTACAGATGAAATGGTGCTGGCAATATATAGATATTTCTATATATATTTCCCCTACGAAAGAATAATGAATTAACAGTAGGGCTTAAGGTGATATAAGATTCATTCCAATTCAGCTTGGTTTTATGTGCAAGAATTTTGACAGCAGATCA

Fln Alignment:

sp_v1.1_unigene7752___SVWR----SIAVVLLHNKINLLLPFGPAAAIAASCNVKH-GWVFLFSLLGIAPLAERLGFLTEQLSFYTGATVGGLLNATFGNATEMIISIYALRNGMMRVVQQSLLGSILSNMLLVLGTAFLAGGIVHNKKDQTFNKATAVVNSGLLLMAVMGLLFPAVLHFTHTELHAGQSELALSRFTSCVMLVAYASYLVFQLKSHRDLYXXXXXXXXXXXXXXXDNLPELTLWEAVLWLAIVTAFVSFLSGYLVNTMKGASDNWKVSVSFMSVILLPLVGNAAEHASAVMFAMKDKLDISLGVAIGSSTQISMFMIPFCVVVGWIMGKPMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLMLCYLIVSASFFVHTDYKMGDN
Q5KQN0______________SKWRRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFTHSEVQYGKSEVSLSRFSSCIMLVAYASYLFFQLKSQRSLYSPIGEQEEEVTEDEEEE-KEITQGEAICWLFVLTIWISILSGYLVDAIQGASESLNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPDSSNN

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
164	50	50			1.0
165	50	50			1.0
166		50		50	1.0
167			50	50	1.0
168	50		50		1.0
170	50	50			1.0
172			50	50	1.0
173			50	50	1.0
178		50		50	1.0
180	25			75	0.996473
290	75			25	0.996473
341		25		75	0.996473
427	20		80		0.995493
473	50		50		1.0
747			14	85	0.993533
748			14	85	0.993533
749			14	85	0.993533
849	11		88		0.923564
885		12	87		0.992554
886			12	87	0.992554
888		87	12		0.992554
890		12	87		0.992554
892		87		12	0.992554
895			12	87	0.992554
896		12		87	0.992554
897	87			12	0.992554
899			87	12	0.992554
901	88		11		0.923564
902		11		88	0.923564
903	77	11		11	0.968132
904		11	88		0.923564
905	11	77		11	0.968132
906			11	88	0.923564
907	11	88			0.923564
909		11		88	0.923564
915		88		11	0.923564
918	87			12	0.992554
924		14		85	0.993533
925	14		85		0.993533
928		12		87	0.992554
929			12	87	0.992554
936	87			12	0.992554
937			87	12	0.992554
938	87		12		0.992554
941	87			12	0.992554
944	12			87	0.992554
945	87	12			0.992554
1297	10	90			0.90298
1300			10	90	0.90298
1819	10			70	0.999998
1902	90		10		0.90298
1969	25		75		0.996473
2435	16			83	0.994512
2436		83	16		0.994512
2438	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain