SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7742

Length: 1701 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7742 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Physcomitrella patens subsp. patens RepID=A9SCV7_PHYPA	-	-	83%
FL-Next	sp=6-phosphogluconate dehydrogenase, decarboxylating; Pinus sylvestris (Scots pine).	-	-	76%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	90%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	90%
Blast2go	response to fructose stimulus	GO:0009750	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	catalytic activity	GO:0003824	Molecular Function	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	6-phosphogluconate dehydrogenase, decarboxylating	IPR006113	-	90%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal	IPR006114	-	90%
Blast2go	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	90%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	90%
Blast2go	Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension	IPR012284	-	90%
Blast2go	Dehydrogenase, multihelical	IPR013328	-	90%
Blast2go	NAD(P)-binding domain	IPR016040	-	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E3V1I6

Fln msg: your sequence is shorter than subject: 458 - 483

Fln protein: STSHDKPRRETLERARDEGNLPLKGFYEPKDFVLSIQKPRAVVILVKAGAPVDQTISTLSEYMEPGDCIVDGGNEWYENTERRAKQVAEKGLLYLGMGVSGGEEGARNGPSLMPGGTLEAYRYIEDVVTKVAAQVDDGPCVTYVGAGGAGNFVKMVHNGIEYGDMQLISEAYDVLRYVGGLTNEELSETFAEWNRGELESFLVEITADIFTVKDEYSDEELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREAAAKIFKQAGLSDVLAGGGTVDKKQLVDDVRKALYASKICSYAQGMNLLRAKSAENGWNLNFGELARIWKGGCIIRAVFLDRIKKAYERNPQLASLLVDPEFAKEMVERQAAWRRVVNLAISAGISTPGMNTSLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKIAKQNRAGLKA*

Protein Length: 459

Fln nts: TGTCTACATCGCACGACAAGCCGCGTCGAGAAACCCTGGAACGCGCACGGGACGAAGGCAACCTCCCACTGAAGGGCTTCTACGAGCCCAAGGACTTCGTGCTATCGATCCAGAAGCCGAGGGCAGTGGTCATCCTCGTCAAGGCCGGGGCTCCGGTCGACCAGACCATTTCGACGCTCTCGGAGTACATGGAGCCCGGCGACTGTATTGTAGACGGGGGCAACGAGTGGTACGAGAACACGGAGCGGAGGGCAAAGCAGGTGGCCGAGAAGGGCTTGCTCTACTTGGGAATGGGGGTCTCCGGAGGCGAGGAGGGAGCTCGCAACGGCCCTTCGCTCATGCCTGGTGGCACTCTTGAGGCCTACAGGTATATTGAAGACGTGGTCACCAAGGTCGCTGCCCAGGTGGACGACGGGCCCTGCGTTACTTATGTGGGAGCTGGAGGCGCCGGGAATTTTGTAAAAATGGTTCACAACGGCATCGAGTATGGAGACATGCAGTTGATCTCTGAGGCCTATGATGTGCTCAGGTATGTCGGGGGTTTGACCAATGAGGAGCTGTCGGAGACCTTTGCAGAGTGGAACAGAGGTGAGCTCGAGAGCTTTTTGGTTGAGATAACTGCAGATATTTTCACTGTGAAGGATGAGTATAGTGATGAGGAGCTTGTGGATAAGATATTGGATAAGACTGGCATGAAGGGGACAGGAAAATGGACCGTGCAGCAGGCTGCAGAGCTCTCTGTTGCAGCCCCCACTATTGCTGCCTCGCTTGATTGCAGGTATCTGAGTGGCCTGAAGGAGGAGCGTGAGGCTGCTGCGAAGATTTTCAAACAGGCTGGTCTGTCTGATGTCTTGGCTGGTGGGGGAACTGTGGACAAGAAGCAGTTGGTTGATGATGTCCGCAAGGCACTGTATGCCTCTAAGATCTGCAGCTATGCGCAGGGGATGAATCTTCTCCGTGCCAAGAGTGCGGAGAAtGGATGGAATCTGAACTTTGGGGAACTGGCCCGTATCTGGAAAGGCGGGTGCATTATCAGGGCTGTTTTCTTGGATAGAATCAAGAAGGCCTACGAACGGAACCCACAGCTTGCAAGCCTCTTGGTTGATCCAGAGTTTGCGAAAGAGATGGTTGAGAGACAGGCTGCTTGGAGAAGGGTGGTGAATTTGGCAATCAGTGCTGGCATCAGCACCCCGGGTATGAATACGAGTCTTGCCTATTTTGATACTTACCGCCGTGCCCGTTTACCTGCTAATCTTGTCCAGGCACAACGGGACCTGTTCGGTGCACATACCTATGAACGGATCGATCGCCCTGGTTCTTTCCATACAGAATGGACAAAGATTGCTAAGCAGAACAGGGCTGGGCTGAAGGCCTGA___AAGTGAATTTGTTCCCCAGGTTCAAATTATGTTTCTGCTGAACAAATTCCTATGCATGCAGCCTGAGTTCTGCCTGTCAGTTTGACATTAAGAGCCTTTTTTCAGCTTGCATGCTTCGTTTATTTCATGATTGTAGGAGAGTTGAAAATTGCGTGCCTTCCTTTTCCAGAGAATGTATCCAATAAATGGCACGGGTAGAATGTTATCAGAGATATTTTTAGGAGCAAAATTTGCCCTTTGGCAAATTTTGCTAAATAATTTTACGTGTGCCAATATTTTTCATGCAGTTGAAAGAGCGCAACTAACAAACCTATTGGGGTTTTTT

Fln Alignment:

sp_v1.1_unigene7742___ETLERARDEGNLPLKGFYEPKDFVLSIQKPRAVVILVKAGAPVDQTISTLSEYMEPGDCIVDGGNEWYENTERRAKQVAEKGLLYLGMGVSGGEEGARNGPSLMPGGTLEAYRYIEDVVTKVAAQVDDGPCVTYVGAGGAGNFVKMVHNGIEYGDMQLISEAYDVLRYVGGLTNEELSETFAEWNRGELESFLVEITADIFTVKDEYSDEELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREAAAKIFKQAGLSDVLAGGGTVDKKQLVDDVRKALYASKICSYAQGMNLLRAKSAENGWNLNFGELARIWKGGCIIRAVFLDRIKKAYERNPQLASLLVDPEFAKEMVERQAAWRRVVNLAISAGISTPGMNTSLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKIAKQNR
E3V1I6______________ETVERAKVEGNLPVKGFHDPKDFVNSIQKPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDIVLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGELCSFLIEITADIFAIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAASLDSRFLSGLKEERVEASKVFKNVDVGTV----PDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSMERGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFNLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRETLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1351	66		33		0.997452
1465		42	57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain