SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7733

Length: 428 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7733
ACCATATTGGGTAGGTGGAACCCAATGCCCTGTACAGATAGTCCTATTATTGCCCAGGAAGAATCAATGATGCATTCCTTGAAATAATCACCAAATTCTCTCCCATGGCCATTCTCAGACATCTTCTTCCCTTGCTTATTGCATTCATCGTTTGTTTATCCCAGCTTAATGCCCAAGTGGATGAAATTCAAATTCTACTCACTGTAAAGGCAAATCTCCAAGACCCAACGAATGCATTGAGCAACTGGGAGAGATCTGCTTCTTCTCCCTGTCAGTGGAATGGAATCAGCTGCAATACAAACGGTTCAGTCACAGAAATCATTCTGGAAAGAAGAGGACTCAGTGGTCCTGTTCCTTTTTCTGTCATTTGTGGGCTAAAGACATTGAAGGGTATTCAGTTGGGTTACAATTCTCTGTATGGAAACATT

Ace file of the UniGene sp_v1.1_unigene7733

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat receptor-like kinase F21M12.36 n=4 Tax=Arabidopsis RepID=Q941F6_ARATH	-	-	1.0e-12	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	lrr xi-23 atp binding kinase protein kinase protein serine threonine kinase	-	-	9.37282e-36	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	9.37282e-36	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	9.37282e-36	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1G6

Fln msg: Distance to subject end: 154 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 108 - 291

Fln protein: MAILRHLLPLLIAFIVCLSQLNAQVDEIQILLTVKANLQDPTNALSNWERSASSPCQWNGISCNTNGSVTEIILERRGLSGPVPFSVICGLKTLKGIQLGYNSLYGNI

Protein Length: 109

Fln nts: ACCATATTGGGTAGGTGGAACCCAATGCCCTGTACAGATAGTCCTATTATTGCCCAGGAAGAATCAATGATGCATTCCTTGAAATAATCACCAAATTCTCTCCC_-_ATGGCCATTCTCAGACATCTTCTTCCCTTGCTTATTGCATTCATCGTTTGTTTATCCCAGCTTAATGCCCAAGTGGATGAAATTCAAATTCTACTCACTGTAAAGGCAAATCTCCAAGACCCAACGAATGCATTGAGCAACTGGGAGAGATCTGCTTCTTCTCCCTGTCAGTGGAATGGAATCAGCTGCAATACAAACGGTTCAGTCACAGAAATCATTCTGGAAAGAAGAGGACTCAGTGGTCCTGTTCCTTTTTCTGTCATTTGTGGGCTAAAGACATTGAAGGGTATTCAGTTGGGTTACAATTCTCTGTATGGAAACATT

Fln Alignment:

sp_v1.1_unigene7733___IITKFSPMAILRHLLPLLIAFIVCLSQLNAQVDEIQILLTVKANLQDPTNALSNWERSASSPCQWNGISCNTNGSVTEIILERRGLSGPVPFSVICGLKTLKGIQLGYNSLYGNI
A9P1G6______________LIFSSSIMAILRNLPAFLIVFLVCLSQFNSQLDEIQILLSIKSGLRDSTNAFQGWESSAASPCKWNGITCNTAGSVTEINLENNGLSGPIPSSAICSLKALTSIQLGNNSLHGNI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
254	83	16			0.994512
269	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain