SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7689

Length: 1421 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7689

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GEK1; GEK1 (GEKO1); D-aminoacyl-tRNA deacylase	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to toxin	GO:0009636	Biological Process	0.0	76%
Blast2go	D-aminoacyl-tRNA deacylase activity	GO:0051499	Molecular Function	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	D-aminoacyl-tRNA deacylase	IPR007508	-	0.0	76%
Blast2go	D-Tyr-tRNATyr deacylase	IPR018033	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADU7

Fln msg:

Fln protein: MRFLSWLKSGRQKVRRVEKMVSLVVSTTSDPASIGPASALLAMSSDWCPGPKLQDISTFLNGRVRLLKQDRGIVEEDNLDKRWEELTGEIVDEIIFLSKHVAVSTRPAVTVHPIGVPHLQSQEECTAGGKPGWAGPPCPRIGPWLRFMKTIVEAHNLTPEFEVTLEATHHGPVVSKPAMFVEIGSTEEYWKRQDAAQVIALVVWQGLGLDGGKGVGNWTEDQKGKKVLVGIGGGHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHFNDIGGSWKDAIKVAVATTQEAFPGAEVLVHLDSKSFKGWQRSVLSQFLSQENIPIGKPNDFL*

Protein Length: 338

Fln nts: TAAAAGTTGCTATATTTCAACCTATAAATAGCGAAAGCATCATAAAAATAAATATGGTGCAGAAATTGGGAGAACTGGATGCACGAATGTTCAAACCACAACCCGTATGGAACACGAATGTACATACGGCACAACCCGAATAGACCTGACACGTTAGAAGCGGACTATATATAATAGTATT_-_ATGCGATTTTTGTCTTGGCTGAAGTCAGGCAGGCAAAAAGTTAGGCGGGTGGAGAAAATGGTGAGCCTGGTAGTGTCAACAACATCTGATCCAGCTTCCATCGGGCCTGCTTCGGCTCTGCTTGCAATGTCCTCGGACTGGTGCCCTGGACCTAAATTGCAGGATATTTCAACATTTCTCAATGGAAGGGTCCGATTACTGAAGCAAGATCGAGGCATTGTGGAGGAAGACAACTTGGATAAACGTTGGGAGGAGTTGACGGGGGAGATTGTGGATGAAATAATATTTCTGAGCAAGCACGTAGCAGTTTCAACCCGCCCTGCTGTTACAGTTCATCCGATAGGTGTGCCACATTTGCAATCACAGGAAGAGTGCACTGCTGGAGGGAAGCCTGGTTGGGCAGGTCCACCTTGTCCTCGGATAGGGCCATGGCTTAGGTTTATGAAGACAATTGTTGAAGCACACAATCTTACACCAGAGTTTGAGGTCACCCTTGAGGCTACTCACCATGGGCCTGTAGTTAGTAAGCCGGCAATGTTCGTTGAGATTGGTAGCACTGAGGAGTATTGGAAGAGGCAGGATGCTGCACAAGTTATTGCTCTGGTAGTATGGCAAGGCCTGGGACTAGATGGAGGCAAGGGCGTGGGGAATTGGACTGAGGACCAAAAGGGAAAGAAGGTTCTGGTCGGGATTGGGGGTGGACATTATGTTCCTCGGCATATGGATATTGTGTGGAAAGAAGACGTTTGGGTAGGCCACCTGCTATCGGGATATTCTTTACCTATGGAAGAACCTAGTTTAAAGAAAAAGGAATATCATTTCAATGATATTGGTGGATCATGGAAAGATGCAATCAAGGTGGCAGTTGCAACAACACAAGAAGCATTTCCAGGAGCAGAGGTTCTTGTACATCTTGATAGTAAGAGCTTCAAGGGTTGGCAACGAAGCGTGCTCTCTCAGTTTTTGTCACAGGAGAACATACCAATTGGCAAACCTAATGACTTTTTGTAA___TCCTTTAGAAGCACTTTGTAATCATGTTCATTTAACTCCAAAGGCATTCACCTTATATTCAGATAAATGTATGATTGGATACAATTTGAACTTTCTAAAATGATACTTGGACTATAATGAAGGAAGGTGATTTATTTGCATTAGCAAAGTGCTATCAGTGCTTTCTTGTTTCAATTCATATCTATCACATTATATCTATTTGAGAAATTATGCAATGAACTTTTTTATT

Fln Alignment:

sp_v1.1_unigene7689___MVSLVVSTTSDPASIGPASALLAMSSDWCPGPKLQDISTFLNGRVRLLKQDRGIVEEDNLDKRWEELTGEIVDEIIFLSKHVAVSTRPAVTVHPIGVPHLQSQEECTAGGKPGWAGPPCPRIGPWLRFMKTIVEAHNLTPEFEVTLEATHHGPVVSKPAMFVEIGSTEEYWKRQDAAQVIALVVWQXXXXXXXXXXXNWTEDQXXXXXXXXXXXXHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHFNDIGGSWKDAIKVAVATTQEAFPGAEVLVHLDSKSFKGWQRSVLSQFLSQENIPIGKPNDFL
D5ADU7______________MVSLVVATTSDPASIGPASALLAMSSDWCPGPKLQDISTFLNGRVRLLKQDRSIVEEDNLDKRWEELTGEIVDEIIFLSKHVAVSNRPALTVHPIGVPHLQSQEECWAGGKPGWAGLPCPRIGPWLRFMKTIAEAHNLTPEFEVTLEATHHGPVVSKPTMFVEIGSTEEYWKRQDAAQVVALVVWQGLGLDGGNGVGNWTKAQTGKKVLVGIGGGHYVPRHMDIVWKEDVWVGHLLSGYSLPMEEPSLKKKEYHLNDIGGAWKEAIRVAVATTREAFPGAEVLVHLDIKSFKGWQRSVLSQFLSQENIPIGKPNEFL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
740		87		12	0.992554
777	71		28		1.0
856	75	25			0.996473
859	75	25			0.996473
861			75	25	0.996473
862			25	75	0.996473
863	25			75	0.996473
1331		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain