SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7649

Length: 1644 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7649

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ribosomal RNA methyltransferase, putative; K02427 ribosomal RNA large subunit methyltransferase E [EC:2.1.1.-]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	ribosomal rna	-	-	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	85%

Source	KEGGs	Term	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	85%
AutoFact	Tetracycline biosynthesis	00253	85%
AutoFact	Histidine metabolism	00340	85%
AutoFact	Tyrosine metabolism	00350	85%
AutoFact	Phenylalanine metabolism	00360	85%
AutoFact	Tryptophan metabolism	00380	85%
AutoFact	Benzoxazinoid biosynthesis	00402	85%
AutoFact	Selenocompound metabolism	00450	85%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	85%
AutoFact	Polycyclic aromatic hydrocarbon degradation	00624	85%
AutoFact	Methane metabolism	00680	85%
AutoFact	Porphyrin and chlorophyll metabolism	00860	85%
AutoFact	Carotenoid biosynthesis	00906	85%
AutoFact	Phenylpropanoid biosynthesis	00940	85%
AutoFact	Flavonoid biosynthesis	00941	85%
AutoFact	Anthocyanin biosynthesis	00942	85%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	85%
AutoFact	Isoquinoline alkaloid biosynthesis	00950	85%
AutoFact	Insect hormone biosynthesis	00981	85%
AutoFact	Biosynthesis of type II polyketide products	01057	85%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	85%
AutoFact	Metabolic pathways	01100	85%
AutoFact	Biosynthesis of secondary metabolites	01110	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal RNA methyltransferase RrmJ/FtsJ	IPR002877	-	0.0	89%
Blast2go	Ribosomal RNA large subunit methyltransferase E	IPR015507	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTP4

Fln msg:

Fln protein: MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKAAAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKDTSLLYCQLKMFFSTVTFAKPKSSRNSSIEAFAVCENYNPPQGFDPNNLYKLLEKASNPYGDDSDCCSAWLEGPNKLYIPFLACGDLSGYDADQSYPLPKVDADGTSYQSLEPVQPPIAPPYKTAIELKKSSHGMKDV*

Protein Length: 311

Fln nts: ATGGGGGACATCCATACGATCAACGTTGGCTCCCGGGCGAAACAATGAAAAAGATTGGGTCACTCTCGGATTTGTTTTCTCGTTGGAAAAACATTTCCATTTATTTTCGAGCGTGAATAGGACACTCCGTCGCGACTCTTGTCCTCTGGAGGTAGGGTGTTGCGGAGTATTTGAACTCTCGGTCATTCTCAAGAACCAGGGAGTGTTGTAGAATATTTGATCGGGAAATTAACAAAATTCTTCGTTGATAAACTCGGCTTCTTCGGGAGTTCTTTTTCTGCAACCATTTTTGTCAATGCATTGCCGTTACATCGATTTGCCAAGCTTCGAAACCTAGAAGATGAGTCGACATTAAAAGTTCTGGACTCCTACTAAAAGCAAAACAAACGAAATCAGAACAAGGAAAACC_-_ATGGGAAAGGCTTCAAAGGATAAGAGGGATATTTACTATCGCAAAGCCAAGGAGGAAGGATGGCGTGCGCGCAGTGCCTTCAAACTCCTGCAAATTGATGAAGAATTCAACATATTCGAAGGTGTGAAGCGTGTAGTTGATTTATGTGCAGCACCTGGCAGTTGGAGTCAAGTTCTCAGCAGAAAGCTTTATCTTCCAGCTAAAGCTGCAGCACAGTCAAGGGATGAGGAACTCCCACTTATTGTAGCTATTGATCTGCAACCAATGGCTTCCATAGAAGGTGTGATACAAGTCCAAGGAGATATTACAAGTGCTCGTACAGCTGAAGTGGTCATCAAACACTTTGATGGGTGCAAAGCAGATTTAGTAGTCTGTGATGGAGCTCCTGATGTTACTGGACTTCATGACATGGATGAGTTTGTACAATCACAACTAATTCTAGCGGCTTTGACAATTGTGACCCATGTACTAAGAGTTGGTGGGAAATTCATTGCAAAGATATTTCGGGGTAAAGATACAAGTCTATTATATTGTCAGCTCAAAATGTTTTTTTCTACGGTTACTTTTGCAAAACCAAAGAGCAGCCGTAATTCCAGTATAGAGGCATTTGCTGTATGTGAGAACTACAATCCTCCTCAAGGATTTGATCCAAACAACTTGTATAAACTCTTGGAGAAAGCTAGCAATCCGTATGGTGATGATTCAGATTGTTGCAGTGCCTGGCTTGAAGGGCCAAATAAACTCTATATTCCATTTTTAGCATGTGGGGATTTAAGTGGATATGATGCAGATCAATCATATCCGCTTCCAAAAGTTGATGCTGATGGAACTTCTTATCAGAGTCTTGAGCCAGTGCAACCACCTATTGCACCACCTTATAAAACTGCCATTGAATTGAAAAAATCTTCTCATGGCATGAAGGATGTTTAG___GGGCTTTTTCTCTTACACAGTTGATCTTTTTGAGCATTTCCCTATGTATTTGACTCCTTTCTTTCGTTTGCAAAGGAGCCAGTCTCTTGTTGCTTCCCTCACCTGATCTTTCCTTTCTCAGTAGGAAGTAAGGAAGATCTCCTCTTCACATTTGTAGCACTGTTAATTTCAACTAACACTGAAAATGACTTTCTAAAAATGTTACGAACATCGTGTTGGTGAATATACTGTCAAGGGTCTGGAAACAGCCTAATCCCCTACACTGGGGAAAAATTGGCAACCTTTACAAAATATTGAAATATTCA

Fln Alignment:

sp_v1.1_unigene7649___MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKAAAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKDTSLLYCQLKMFFSTVTFAKPKSSRNSSIEAFAVCENYNPPQGFDPNNLYKLLEKASNPYGDDSDCCSAWLEGPNKLYIPFLACGDLSGYDADQSYPLPKVDADGTSYQSLEPVQPPIAPPYKTAIELKKSSHGMKDV
C0PTP4______________MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKAAAQSRDEELPLIVAIDLQPMASIEGVIQVQGDITSARTAEVVIKHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLRVGGKFIAKIFRGKDTSLLYCQLKMFFSTVTFAKPKSGRNSSIEAFAVCENYNPPEGFDPNNLYKLLEKAGNPYGDDSDCCSAWLEGPNKLYIPFLACGDLSGYDADQSYPLPKVDADGTSYQSLEPVQPPIAPPYKTAIELKKSSHGMKDV

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
77	33			66	0.997452
79			33	66	0.997452
80		66	33		0.997452
81			33	66	0.997452
82		66	33		0.997452
126		83	16		0.994512
127			16	83	0.994512
128		83	16		0.994512
129		83	16		0.994512
211	66		33		1.0
214	83		16		0.994512
224	16		83		0.994512
292			16	83	0.994512
293			83	16	0.994512
951	40		40		1.0
1092	88	11			0.923564
1094		88		11	0.923564
1095	88		11		0.923564
1100			88	11	0.923564
1102	88		11		0.923564
1103		11		88	0.923564
1104			88	11	0.923564
1107		11	88		0.923564
1124		88		11	0.923564
1135		11		88	0.923564
1144		88		11	0.923564
1218	12	87			0.992554
1252	10		90		0.90298
1342			83	16	0.994512
1382		83		16	0.994512
1389			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain