SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7648

Length: 1808 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7648

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RT58_PHYPA	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Carbohydrate/purine kinase	IPR011611	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB17

Fln msg: your sequence is longer than subject: 345 - 301

Fln protein: MGAVEFPTSEPALIQEHSSRTVVGLQPVALVDHVARVDWTVLDAIPGERGGSQRVKVEELEHILSEVNMHMLPTPGELSPIRTMAGGSVANTIRGLAAGFGISCNIVGACGDDEQGQMFLTNMKVSGVNLSQLRTKRGPTGQCVCLVDAEGNRTMRPCLSDAVRLQASELSRDDFRGSQWVVLNGYGFYGEKLVEKAVSLAKQDGACISMDLASFEVVRNFRSQLLGLLESGQVDLCFANEDEARELMRGEPNADAESALEFLANYCRWAVVMLGPKGCIARHGKEIARVPAIEGAEGHRYNWCRGFVCKWFSVRNDKGPPISRLLQNGLLQWWCCGACSWWGS*

Protein Length: 346

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTGTCATGCTATGGGGATCGGGAGGATTTTGTTGCGACCCACCCAACCTCCACTCTCCGGACAAAACTTTTCCGAGGATGAATTACGAGATTGTGACCTGAAAACCTATTTACGAACGGCGGATTGGGCGCGTTTGTGTCCAGTCGGGGGTTGTGTATAAGAAGGCAAGGAGCAAACGGAGCAAAGGGATCAAACCCTCCTCCTCAAGTCTAAGGAA_-_ATGGGTGCTGTTGAGTTCCCTACCTCTGAGCCTGCCCTAATACAGGAACACAGTTCTCGTACAGTTGTGGGGCTTCAGCCAGTGGCTCTGGTTGATCATGTTGCCAGGGTGGACTGGACCGTCCTGGATGCCATTCCTGGAGAACGAGGTGGCTCTCAGAGAGTGAAAGTTGAGGAGCTGGAGCATATACTATCAGAAGTTAATATGCACATGTTGCCAACTCCTGGAGAGCTTTCTCCTATAAGAACTATGGCTGGTGGAAGTGTTGCCAATACCATTCGAGGTTTGGCAGCAGGCTTTGGAATTTCTTGTAACATAGTAGGGGCTTGTGGTGATGATGAGCAAGGACAGATGTTTCTGACAAACATGAAGGTGTCGGGGGTCAATCTTTCACAATTGAGAACCAAAAGAGGACCTACTGGACAGTGTGTGTGTCTGGTTGATGCCGAAGGCAACCGTACCATGCGTCCTTGCCTGTCTGATGCCGTTAGACTCCAGGCCAGTGAGCTGAGTCGTGATGATTTTAGAGGATCTCAGTGGGTTGTGCTGAATGGCTATGGATTCTACGGTGAAAAGTTGGTGGAGAAAGCTGTTAGTTTGGCAAAGCAAGATGGTGCATGTATATCGATGGATTTGGCCAGTTTTGAGGTGGTTCGGAACTTTAGATCACAATTGTTAGGTTTATTAGAGTCTGGGCAAGTAGATCTTTGTTTTGCAAATGAAGATGAAGCAAGAGAGTTGATGAGGGGTGAGCCCAATGCAGATGCAGAGTCCGCTTTGGAGTTTTTGGCCAATTATTGTAGATGGGCTGTAGTAATGCTTGGTCCCAAAGGGTGCATTGCTCGACATGGCAAAGAGATTGCTCGAGTTCCAGCCATTGAAGGGGCAGAAGGTCATCGATACAACTGGTGCCGGGGATTTGTTTGCAAGTGGTTTTCTGTACGGAATGATAAAGGGCCTCCCATTAGCAGACTGCTGCAGAATGGGTTGTTGCAGTGGTGGTGCTGTGGTGCGTGCTCTTGGTGGGGAAGTTAG___TCCAGAGAATTGGCAGTGGGCTTACAAGAAAATGCAGGTTCTAGGTCTTCCAGCACCAAATTTTGCACAGGGTTCTATAAGAGATTCCACTAATTAGACTCGGAATTGAATTGTTCGTTTAACAAACACTGTCGCAACTTTTCTCCAGAGCAGTCAAATTTCCATGCAATATTTACCGATTATTTCAGTCCCAGTGTTGGTGATTTTGAATTCATTCAATAAGTTTAAAAAAGATTGGCGGGAGAAAACAGTTAAAGAGTGCTAAGAGAGTCCCCCAGAGATATATATTCTCTGTTATTTATTCTTCAGCCTTGGAGCAAAACTTCTCTTTCGTCATATGTTTTCACTTTTGGCTGGTAAGCGGCAACATAATGGACATCTGAGAATTCCTCTCCAATTAAGTTATTTATGCACTTGGGACTCTGCTGTCTTAATCTATCACTAATAATACATTCTGATTTTTGTTTTGAACCAAGTTATTTATGGACTTGGGACTCTGCTCTCCTAATCTATAACTATTAAAACTTT

Fln Alignment:

sp_v1.1_unigene7648___MGAVEFPTSEPALIQEHSSRTVVGLQPVALVDHVARVDWTVLDAIPGERGGSQRVKVEELEHILSEVNMHMLPTPGELSPIRTMAGGSVANTIRGLAAGFGISCNIVGACGDDEQGQMFLTNMKVSGVNLSQLRTKRGPTGQCVCLVDAEGNRTMRPCLSDAVRLQASELSRDDFRGSQWVVLNGYGFYGEKLVEKAVSLAKQDGACISMDLASFEVVRNFRSQLLGLLESGQVDLCFANEDEARELMRGEPNADAESALEFLANYCRWAVVMLGPKGCIARHGKEIAR
D5AB17______________MGADEFPTSEPAPIQGHTSCTIVGLQPVALVDHVARVDWTVLDAIPGERGGSQRVTVEELEHILAEVNMHMIPTSGELSPIRTMAGGSVANTIRGLAAGFGVSCNIVGACGDDEQGQMFLTNMKMSGVSLPQLRIKTGPTGQCACLVDAEGNRTMRPCLSDAVRLQASELNGDDFRGSQWVVLNGYGFYGQKLVEKAVSLAKQDGACISMDLASFEVVRNFRSQLLDLLESGKVDLCFANEDEARELMSGEPNADAESALEFLAKYCRWAVVMLGPKGCIARNGKEVAR

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
216		50	50		1.0
253		40		60	1.0
294	50		50		1.0
325	16		83		0.994512
431		87		12	0.992554
619			56	43	1.0
820	57		42		1.0
1173		75		25	0.996473
1174	75	25			0.996473
1176		25	75		0.996473
1179		25	75		0.996473
1180	25			75	0.996473
1302	20		80		0.995493
1306	20		80		0.995493
1330			20	80	0.995493
1333		80	20		0.995493
1334	80			20	0.995493
1340	80			20	0.995493
1341	80			20	0.995493
1342	80		20		0.995493
1343			20	80	0.995493
1344		20		80	0.995493
1346			20	80	0.995493
1347			80	20	0.995493
1351	80	20			0.995493
1352	20		80		0.995493
1398		80		20	0.995493
1415		75		25	0.996473
1425		75		25	0.996473
1431	80	20			0.995493
1433		80		20	0.995493
1434	80	20			0.995493
1437		80	20		0.995493
1439	80	20			0.995493
1440	80	20			0.995493
1443			20	80	0.995493
1444		80	20		0.995493
1451	80	20			0.995493
1483			20	80	0.995493
1500	80	20			0.995493
1694	90	10			0.90298
1701	90		10		0.90298
1720		10		90	0.90298
1722	88	11			0.923564
1726	88			11	0.923564
1730	11			88	0.923564
1759		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain