SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7641

Length: 3493 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7641
ATTGTTCTCTGTTGCGTTCTCTCTTTGATTTTCGGGCTTGAATCTATCGCCGGGCCTCGTCTGGTCCGATCAGATAAAATAGCCACTGTTGTCTTTATTAGAATTCTTTTTGTGGCACGTTCTGCAGTTTTTGGAAATGGCATCAACTGCAACAACCACAGGATGGTTGAGAGGAAGAGTGAAGGCTGTACCGTCAGGACACAGCCTAGTCATCATAGGCAGTGCAAAGACAGAGTTGCCACCTGAAAAACAAATTACGCTGTCGTCTCTTATGGCTCCCAAACTGGCTCGCAGAGGGGGCATTGATGAACCGTTTGCCTGGGAAAGCAGAGAGTTTTTACGAAAACTTTGTATTGGGAAGGAAGTCACCTTTCGAGTAGACTATACTGTGCCCTCTATCGGAAGAGAATTTGGCTCAGTGTTTCTTGGTGACAAAAATGTTGCTCTGACCGTTGTATCTGAAGGTTGGGCAAAGGTCAGGGATCAAGGACCTCAGAAAGGAGAAGCTAGCCCTTATTTAGCAGAGTTACTGCGGCTTGAAGAGCAAGCCAAGACACAAAGTTATGGCCGGTGGAGCAAGACACCTGGTGCTGCAGAGTCCTCCATCAGGGACCTGCCTCCATCAGCCATTGGAGATTCAAGCAACTTTGATGCATTGTCCCTCTTATCTGCAAATAAAGGAAAACCTATGGAAGCTCTCGTGGAGCAAGTTCGTGATGGCAGTACAGTACGGGTTTATTTGCTCCCTTCTTTTCAGTTTGTGCAAGTCTTTATGGCAGGGATCCAGTCTCCATCTATGGGAAGAAGACCTACTGCATTGGAGACCCCAACACCCACTGAAGTAGTTTCAGATGAAACAAATGGGGAAGTTGAATCTTCTTCATCTTTAACGACAGCACAGAGGCTTGCTGCATCTACAGCTGTATCGACTGAAGTTCTGCCAGATCCATTTGCGAAAGAGGCAAAACATTTCACTGAAATTAGAGTTTTAAACAGAGATGTTCGGATTGTGTTAGAAGGTGTTGATAAATTTAGTAATTTAATCGGTTCGGTGTATTACCCTGATGGTGATGTTGCAAAGGACCTCGCATTAGAGCTTGTAGAAAATGGTTTAGCTAAATTTGTTGAATGGAGTGCTAGTATGATGGAGGAGGATGCCAAAAGGCGCCTAAAGAATGCTGAGCTCCAGGCAAAAAAAGATCGCTTGAGGATCTGGACTAATTATGTTCCACCTCCTTCTAATTCAAAAGCAATTCGCGATGACAAGTTTACTGGAAAGGTTGTGGAGGTTGTTAGTGGAGACTGTATTGTTGTTGCTGATGATTCTGCTCCCTATGGGAGTCCTTCGGCTGAACGTAGGATCAATTTGTCAAGTATCAGAGCTCCAAAGATTGGCAATCCACGAAGAGATGAAAAACCTGCTCCATATGCTCGTGAAGCAAAAGAGTATTTACGTAGCAGACTCATTGGCAAAGAGGTCTATGTAACAATGGAATATGCCAGGAAAGTTAGCATGACTGATGGCCCTGCACCACCACCATCATCGGGAATGGCAGATTCAAGAATAATGGATTTTGGATCTGTTTTCTTAAAATCTCCGTTAAAGTCTGAGGTTGACGATGTTGTCCCTACAATGACATCATCTAGCCACCCAGAGGGTGTTAATGTGGCTGAAATGGTGGTTGCAAGGGGATTTGGTACAGTGATTAGACACAGGGATTTTGAAGAGAGATCAAACTTTTATGATGCTTTACTTGCTGCTGAATCACGGGCAATGCAGGGGAAGAGAGGAATACACTCTGCAAAGGAGTCTCCCGTGATGCATATAACAGACCTTTTGATGGCATCAGCTAAAAAGACAAAAGATTTTCTACCCTTTCTGCAGCGAACCAAAAGGCAAACAGCTATTGTTGACTATGTCTTAAGTGGACATCGTTTTAAGCTGCTAATTCCAAAGGCAACTTGTGCTATTGCATTTTCGTTTTCAGGAGTGAGATGTCCAGGGCGTGATGAACCATATGCAGATGAAGCAATAGCATTTATGCGCAGAAAAATTCTGCAGCGGGATGTTGAGGTTGAAATTGAAACAGTAGACAGGACTGGCACATATCTAGGATCCCTTTGGGAATCCAAAACAAATATGGCAGCAGTACTGTTAGAAGCTGGTCTTGCAAAGCTGCATCCATTCTTCAGTACTGAAAAGACAGTTGATGGTCACCTTCTAATTCAGGCTGAAGAAAATGCCCGAAAGCAACGTCTGAAGGTCTGGGAAAATTATGTTGAAGGCAAAGAGCCTGCTAACGGATCTGCTTCTGAATCAACTACGAAAAAGGAGGTTTTGAAGGTTGCTGTTACGGAAGTTCTTGGTGGTGGAAAATTTTATGTTCAAATTGCTGGTGATCAGAGAGTCTCTAGCATTCAGCAGCAGCTTTCTGGGTTGAGCCTCCAAGACAAGCCTTCTGTGGGATTCAACCCAAAGAAGGGAGATATAGTTCTTGCTCAATTTAGTGCAGATGGTTCCTGGAATAGGGCAATGGTCGTAAATGCTCCTAGAGGTGGAGCTATAGCCTCTCCTAAAGATGAGTTTGAGGTTTTCTACATTGACTATGGGAACCAGGAAACTGTAATTTACAGTAAATTACGACCTCTAGATCCTTCAGTTTCTTCTGCTCCTGGTCTTGCGCAACTTTGCAGCCTGGCATACATAAAAGTGCCTGGTTTAGAAGAGGATTTTGGCCAAGAGGCTGCAGAATATTTTAGTGATTGTACACTTGGAAGTTCCAAGGAGCTCATGGCTATGGTAGAGAGTCGTGACACCACTGGAGGAAAGGTAAAAGGTCAAGGGACAGGAACTGTCCTACTAGTAACTCTTGTTGATGTTGCAGCGGAGACAAGCATAAATGCTGCTATGCTACAGGAGGGTCTGGCTCGATTGGAAAGGAAGAAAAAATTTGACACGAAGGAAAGACAATCTGCCCTTGATAATTTAGAAGAGCACCAGCAAAAAGCCAGGCAAGGCAGGTTGAATATATGGCAGTACGGGGATATTGAGTCAGATGAGGAGGAAGTTCCTGCCACCCGAAAAGGTGGTCGTCGGTAGGGTTGTGGAACTGAGTCAGATGAGGAGGAAGCTCCTGCCACCCGAAAAGGTGGTTGTCGGTAGGGTTGTGGAACCTGGAGTAGTAGTATAGCTTTGTAGAATTAGTGGTTTTTATCATCCGGATTGGTGGTACTGGCTTGCCCTTTCAATCATATAGCTTGGGCAGTTTTGAGAATTTTAATTTATAGATTTAGTGTGTTATTTTGGGATTGAAGTCTAATAATCTTCTCTAATTATGGGGGAAAGCTGGTTGTGATTCTGGTGGCAATTGAACTAACTCAGCCCATAGACGAGTCATCTGCATTTCACATTGTGAACATTTATTTCTATAAAGTGTGAATAAAGCAAATGTACATTGTATGGCCTTAAAATTGTGCAGTGTCTACCTTGCTA

Ace file of the UniGene sp_v1.1_unigene7641

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TUDOR protein with multiple SNc domains n=2 Tax=Picea RepID=Q0JRI3_PICAB	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	rna binding protein rp120	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%
Blast2go	cell wall	GO:0005618	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Tudor domain	IPR002999	-	84%
Blast2go	Staphylococcal nuclease (SNase-like)	IPR006021	-	84%
Blast2go	Maternal tudor protein	IPR008191	-	84%
Blast2go	Staphylococcal nuclease (SNase-like), OB-fold	IPR016071	-	84%
Blast2go	RNA-induced silencing complex, nuclease component Tudor-SN	IPR016685	-	84%
Blast2go	Tudor subgroup	IPR018351	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRY9

Fln msg:

Fln protein: MASTATTTGWLRGRVKAVPSGHSLVIIGSAKTELPPEKQITLSSLMAPKLARRGGIDEPFAWESREFLRKLCIGKEVTFRVDYTVPSIGREFGSVFLGDKNVALTVVSEGWAKVRDQGPQKGEASPYLAELLRLEEQAKTQSYGRWSKTPGAAESSIRDLPPSAIGDSSNFDALSLLSANKGKPMEALVEQVRDGSTVRVYLLPSFQFVQVFMAGIQSPSMGRRPTALETPTPTEVVSDETNGEVESSSSLTTAQRLAASTAVSTEVLPDPFAKEAKHFTEIRVLNRDVRIVLEGVDKFSNLIGSVYYPDGDVAKDLALELVENGLAKFVEWSASMMEEDAKRRLKNAELQAKKDRLRIWTNYVPPPSNSKAIRDDKFTGKVVEVVSGDCIVVADDSAPYGSPSAERRINLSSIRAPKIGNPRRDEKPAPYAREAKEYLRSRLIGKEVYVTMEYARKVSMTDGPAPPPSSGMADSRIMDFGSVFLKSPLKSEVDDVVPTMTSSSHPEGVNVAEMVVARGFGTVIRHRDFEERSNFYDALLAAESRAMQGKRGIHSAKESPVMHITDLLMASAKKTKDFLPFLQRTKRQTAIVDYVLSGHRFKLLIPKATCAIAFSFSGVRCPGRDEPYADEAIAFMRRKILQRDVEVEIETVDRTGTYLGSLWESKTNMAAVLLEAGLAKLHPFFSTEKTVDGHLLIQAEENARKQRLKVWENYVEGKEPANGSASESTTKKEVLKVAVTEVLGGGKFYVQIAGDQRVSSIQQQLSGLSLQDKPSVGFNPKKGDIVLAQFSADGSWNRAMVVNAPRGGAIASPKDEFEVFYIDYGNQETVIYSKLRPLDPSVSSAPGLAQLCSLAYIKVPGLEEDFGQEAAEYFSDCTLGSSKELMAMVESRDTTGGKVKGQGTGTVLLVTLVDVAAETSINAAMLQEGLARLERKKKFDTKERQSALDNLEEHQQKARQGRLNIWQYGDIESDEEEVPATRKGGRR*

Protein Length: 989

Fln nts: ATTGTTCTCTGTTGCGTTCTCTCTTTGATTTTCGGGCTTGAATCTATCGCCGGGCCTCGTCTGGTCCGATCAGATAAAATAGCCACTGTTGTCTTTATTAGAATTCTTTTTGTGGCACGTTCTGCAGTTTTTGGAA_-_ATGGCATCAACTGCAACAACCACAGGATGGTTGAGAGGAAGAGTGAAGGCTGTACCGTCAGGACACAGCCTAGTCATCATAGGCAGTGCAAAGACAGAGTTGCCACCTGAAAAACAAATTACGCTGTCGTCTCTTATGGCTCCCAAACTGGCTCGCAGAGGGGGCATTGATGAACCGTTTGCCTGGGAAAGCAGAGAGTTTTTACGAAAACTTTGTATTGGGAAGGAAGTCACCTTTCGAGTAGACTATACTGTGCCCTCTATCGGAAGAGAATTTGGCTCAGTGTTTCTTGGTGACAAAAATGTTGCTCTGACCGTTGTATCTGAAGGTTGGGCAAAGGTCAGGGATCAAGGACCTCAGAAAGGAGAAGCTAGCCCTTATTTAGCAGAGTTACTGCGGCTTGAAGAGCAAGCCAAGACACAAAGTTATGGCCGGTGGAGCAAGACACCTGGTGCTGCAGAGTCCTCCATCAGGGACCTGCCTCCATCAGCCATTGGAGATTCAAGCAACTTTGATGCATTGTCCCTCTTATCTGCAAATAAAGGAAAACCTATGGAAGCTCTCGTGGAGCAAGTTCGTGATGGCAGTACAGTACGGGTTTATTTGCTCCCTTCTTTTCAGTTTGTGCAAGTCTTTATGGCAGGGATCCAGTCTCCATCTATGGGAAGAAGACCTACTGCATTGGAGACCCCAACACCCACTGAAGTAGTTTCAGATGAAACAAATGGGGAAGTTGAATCTTCTTCATCTTTAACGACAGCACAGAGGCTTGCTGCATCTACAGCTGTATCGACTGAAGTTCTGCCAGATCCATTTGCGAAAGAGGCAAAACATTTCACTGAAATTAGAGTTTTAAACAGAGATGTTCGGATTGTGTTAGAAGGTGTTGATAAATTTAGTAATTTAATCGGTTCGGTGTATTACCCTGATGGTGATGTTGCAAAGGACCTCGCATTAGAGCTTGTAGAAAATGGTTTAGCTAAATTTGTTGAATGGAGTGCTAGTATGATGGAGGAGGATGCCAAAAGGCGCCTAAAGAATGCTGAGCTCCAGGCAAAAAAAGATCGCTTGAGGATCTGGACTAATTATGTTCCACCTCCTTCTAATTCAAAAGCAATTCGCGATGACAAGTTTACTGGAAAGGTTGTGGAGGTTGTTAGTGGAGACTGTATTGTTGTTGCTGATGATTCTGCTCCCTATGGGAGTCCTTCGGCTGAACGTAGGATCAATTTGTCAAGTATCAGAGCTCCAAAGATTGGCAATCCACGAAGAGATGAAAAACCTGCTCCATATGCTCGTGAAGCAAAAGAGTATTTACGTAGCAGACTCATTGGCAAAGAGGTCTATGTAACAATGGAATATGCCAGGAAAGTTAGCATGACTGATGGCCCTGCACCACCACCATCATCGGGAATGGCAGATTCAAGAATAATGGATTTTGGATCTGTTTTCTTAAAATCTCCGTTAAAGTCTGAGGTTGACGATGTTGTCCCTACAATGACATCATCTAGCCACCCAGAGGGTGTTAATGTGGCTGAAATGGTGGTTGCAAGGGGATTTGGTACAGTGATTAGACACAGGGATTTTGAAGAGAGATCAAACTTTTATGATGCTTTACTTGCTGCTGAATCACGGGCAATGCAGGGGAAGAGAGGAATACACTCTGCAAAGGAGTCTCCCGTGATGCATATAACAGACCTTTTGATGGCATCAGCTAAAAAGACAAAAGATTTTCTACCCTTTCTGCAGCGAACCAAAAGGCAAACAGCTATTGTTGACTATGTCTTAAGTGGACATCGTTTTAAGCTGCTAATTCCAAAGGCAACTTGTGCTATTGCATTTTCGTTTTCAGGAGTGAGATGTCCAGGGCGTGATGAACCATATGCAGATGAAGCAATAGCATTTATGCGCAGAAAAATTCTGCAGCGGGATGTTGAGGTTGAAATTGAAACAGTAGACAGGACTGGCACATATCTAGGATCCCTTTGGGAATCCAAAACAAATATGGCAGCAGTACTGTTAGAAGCTGGTCTTGCAAAGCTGCATCCATTCTTCAGTACTGAAAAGACAGTTGATGGTCACCTTCTAATTCAGGCTGAAGAAAATGCCCGAAAGCAACGTCTGAAGGTCTGGGAAAATTATGTTGAAGGCAAAGAGCCTGCTAACGGATCTGCTTCTGAATCAACTACGAAAAAGGAGGTTTTGAAGGTTGCTGTTACGGAAGTTCTTGGTGGTGGAAAATTTTATGTTCAAATTGCTGGTGATCAGAGAGTCTCTAGCATTCAGCAGCAGCTTTCTGGGTTGAGCCTCCAAGACAAGCCTTCTGTGGGATTCAACCCAAAGAAGGGAGATATAGTTCTTGCTCAATTTAGTGCAGATGGTTCCTGGAATAGGGCAATGGTCGTAAATGCTCCTAGAGGTGGAGCTATAGCCTCTCCTAAAGATGAGTTTGAGGTTTTCTACATTGACTATGGGAACCAGGAAACTGTAATTTACAGTAAATTACGACCTCTAGATCCTTCAGTTTCTTCTGCTCCTGGTCTTGCGCAACTTTGCAGCCTGGCATACATAAAAGTGCCTGGTTTAGAAGAGGATTTTGGCCAAGAGGCTGCAGAATATTTTAGTGATTGTACACTTGGAAGTTCCAAGGAGCTCATGGCTATGGTAGAGAGTCGTGACACCACTGGAGGAAAGGTAAAAGGTCAAGGGACAGGAACTGTCCTACTAGTAACTCTTGTTGATGTTGCAGCGGAGACAAGCATAAATGCTGCTATGCTACAGGAGGGTCTGGCTCGATTGGAAAGGAAGAAAAAATTTGACACGAAGGAAAGACAATCTGCCCTTGATAATTTAGAAGAGCACCAGCAAAAAGCCAGGCAAGGCAGGTTGAATATATGGCAGTACGGGGATATTGAGTCAGATGAGGAGGAAGTTCCTGCCACCCGAAAAGGTGGTCGTCGGTAG___GGTTGTGGAACTGAGTCAGATGAGGAGGAAGCTCCTGCCACCCGAAAAGGTGGTTGTCGGTAGGGTTGTGGAACCTGGAGTAGTAGTATAGCTTTGTAGAATTAGTGGTTTTTATCATCCGGATTGGTGGTACTGGCTTGCCCTTTCAATCATATAGCTTGGGCAGTTTTGAGAATTTTAATTTATAGATTTAGTGTGTTATTTTGGGATTGAAGTCTAATAATCTTCTCTAATTATGGGGGAAAGCTGGTTGTGATTCTGGTGGCAATTGAACTAACTCAGCCCATAGACGAGTCATCTGCATTTCACATTGTGAACATTTATTTCTATAAAGTGTGAATAAAGCAAATGTACATTGTATGGCCTTAAAATTGTGCAGTGTCTACCTTGCTA

Fln Alignment:

sp_v1.1_unigene7641___MASTATTTGWLRGRVKAVPSGHSLVIIGSAKTELPPEKQITLSSLMAPKLARRGGIDEPFAWESREFLRKLCIGKEVTFRVDYTVPSIGREFGSVFLGDKNVALTVVSEGWAKVRDQGPQKGEASPYLAELLRLEEQAKTQSYGRWSKTPGAAESSIRDLPPSAIGDSSNFDALSLLSANKGKPMEALVEQVRDGSTVRVYLLPSFQFVQVFMAGIQSPSMGRRPTALETPTPTEVVSDETNGEVESSSSLTTAQRLAASTAVSTEVLPDPFAKEAKHFTEIRVLNRDVRIVLEGVDKFSNLIGSVYYPDGDVAKDLALELVENGLAKFVEWSASMMEEDAKRRLKNAELQAKKDRLRIWTNYVPPPSNSKAIRDDKFTGKVVEVVSGDCIVVADDSAPYGSPSAERRINLSSIRAPKIGNPRRDEKPAPYAREAKEYLRSRLIGKEVYVTMEYARKVSMTDGPA-PPPSSGMADSRIMDFGSVFLKSPLKSEVDDVVPTMTSSSHPEGVNVAEMVVARGFGTVIRHRDFEERSNFYDALLAAESRAMQGKRGIHSAKESPVMHITDLLMASAKKTKDFLPFLQRTKRQTAIVDYVLSGHRFKLLIPKATCAIAFSFSGVRCPGRDEPYADEAIAFMRRKILQRDVEVEIETVDRTGTYLGSLWESKTNMAAVLLEAGLAKLHPFFSTEKTVDGHLLIQAEENARKQRLKVWENYVEGKEPANGSASESTTKKEVLKVAVTEVLGGGKFYVQIAGDQRVXXXXXXXXXXXXXDKPSVGFNPKKGDIVLAQFSADGSWNRAMVVNAPRGGAIASPKDEFEVFYIDYGNQETVIYSKLRPLDPSVSSAPGLAQLCSLAYIKVPGLEEDFGQEAAEYFSDCTLGSSKELMAMVESRDXXXXXXXXXXXXXXXXXXXXDVAAETSINAAMLQEGLARLERKKKFDTKERQSALDNLEEHQQKARQGRLNIWQYGDIESDEEEVPAT
C0PRY9______________MASTATTTGWLRGRVKAVPSGDSLVIIGSAKTELPPEKTITLSSLMAPKLARRGGIDEPFAWESREFLRKLCIGKEVTFRVDYTVPSIGREFGSVFLGDKNVALTVVSEGWAKVRDQGPQKAEASPYLAELLRLEEQAKTQSYGRWTKTPGAAEASIRDLPPSAIGDPSNFDAMSLLSANKGKPMEALVEQVRDGSTVRVYLLPTFQFVQVFMAGIQSPSMGRRPAVVETPAPTEIVSDETDGEVESSSSLTTAQRLAASTAVANEVLPDPYAKEAKHFTEIRVLNRDVRIVLEGVDKFSNLIGSVYYPDGDVAKDLALELVENGLAKYVEWSASMMEEDAKRRLKNAELQAKKDHLRIWINYVPPPSNSKAIRDDKFTGKVVEVVSGDCIVVADDSAPYGSPLAERRVNLSSIRAPKIGNPRRDEKPAPYAREAKEYLRSRLIGKEVYVTMEYARKVSMTDGPAPPPPSSGTADSRIMDFGSVFLQSPLKTEVEDVVPTMTSSSHPEGVNVAEMVVARGFGTVIRHRDFEERSNFYDALLAAESRAMQGKRGIHSARESPVMHITDLLMAPAKKTKDFLPFLQRTKRQTAIVDYVLSGHRFKLLIPKATCAIAFSFSGVRCPGRDEPYADEAIAFMRRKILQRDVEVEIETVDRTGTYLGSLWESKTNMAAVLLEAGLAKLHPFFSTEKTVDGHLLIQAEENARKQRLKVWENYVEGKEPANGSASESTTKKEVLKVAVTEVLGGGKFYVQIVADQRVSSIQQQLSGLSLQDKPSVGFNPKKGDIVLAQFSADDSWNRAMVVNAPRGGSIASPKDEFEVFYIDYGNQETVIYSKLRPLDPSVSSAPGLAQLCSLAYIKVPGLEEDFGQEAAEYFSDCTLRSSKELMAMVEGRDTTGGKVKGQGTGTVLLVTLVDVEAETSINATMLQEGLARLERKKKFDTKERQSALDNLEEHQQKARQGRLNIWQYGDVESDEEEVPAS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
256	66		33		0.997452
258	85			14	0.993533
259			14	85	0.993533
263	14		85		0.993533
269	14		85		0.993533
526	15	84			0.999986
737	11	5	83		0.999887
866		16		83	0.994512
1353			89	10	0.999919
1358	89	10			0.999919
1360			89	10	0.999919
1362	89		10		0.999919
1578			10	90	0.90298
1580		10		90	0.90298
1581	10		90		0.90298
1582		10	90		0.90298
1725			10	90	0.90298
1726			10	90	0.90298
1964	81		18		0.999994
2156	90		10		0.90298
3467	7	3	88		0.998862
3468	29	55		3	1.0
3469		69		21	1.0
3477	25			75	0.996473
3478	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain