SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7637

Length: 1850 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7637 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	serine-threonine kinase	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	81%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	81%
Blast2go	NAF domain	IPR004041	-	81%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	81%
Blast2go	Protein kinase-like domain	IPR011009	-	81%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	81%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	81%
Blast2go	NAF/FISL domain	IPR018451	-	81%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9K4

Fln msg:

Fln protein: MEMKPNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKAMEKEKILKVGMMEQIKREVSTMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGNVKVSDFGLSALPEQFRKDGLLHTTCGTPAYVAPEVITKKGYDGAVADIWSCGVILFVLMAGYLPFQDANLMIMYKKIHKGDYKCPPWFSSEVRRLVLRLLDPNPQTRVTVPQLMEVPWFRRGFQRPQADKDVTVDLLDDVDSAFSVLKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIVSKLEEIASLFRFSFKKSKDFKMKLQGSEEGRQGYLSIDAEIFEVTPSFFMVELRKTGGDTLEYSKFCRQDLRPGLKDIVWTWDGTSQEK*

Protein Length: 432

Fln nts: TACACTTTAGTTGGAGCTCAGTGATCCCCTTTGCCTTTACTCATTCGAGTTATATTCACAGGAAAGCTTGTATATACACTGGTTGAAGTATATGCACAGATTCACTGTGTATATACAGAGAATGCAATAGGATGCCCTTCCAGGACGTCTATGCTATTATTACTCGCGGAGCTCCAGCACAGCTCGCGTGCAAAGAGCAGAGGCAGATGATCAGCAGAAACACTCACAGATCTTGGAATGGAGTTCATATCGGAGAGCAAGGTCTTGGATTAGAAATTGCACAGAGAGCGGGTTGAATAGGGGTATAGCTTTAACCCACACGAGTTTGTGGTCTTCTTTTAGCAGAG_-_ATGGAGATGAAGCCCAATATTCTGATGGGGAGGTACGAATTAGGGCGCCTGCTTGGGCAAGGAACGTTCGCCAAGGTCTACTATGCCAGAAATTTGAAGACAGGAGAGAGCGTAGCCATTAAAGCCATGGAGAAGGAAAAAATCCTCAAGGTCGGTATGATGGAGCAAATTAAACGGGAAGTGTCGACTATGAGACTGGTCCGACACCCTAACATTGTTAGACTCTATGAAGTCATGGCGAGCAAGACCAAGATTTACTTTGTGATGGAGTATGTTAAGGGCGGTGAGCTCTTCAACAGGGTTGCAGACAAGGGGAAACTGAAGGAGGAGGAGGCGAGGAAGTATTTTCAGCAACTGATTAGCGCGGTGGATTTTTGCCACAGCCGGGGAGTGTACCACCGGGACTTGAAGCCGGAAAACTTGTTATTAGACGACAACGGGAATGTTAAGGTCTCCGACTTCGGGCTGAGCGCGCTGCCGGAGCAGTTCAGGAAGGACGGCCTTCTGCACACGACGTGCGGCACGCCTGCGTATGTTGCGCCCGAAGTTATCACCAAGAAGGGCTATGACGGTGCCGTGGCCGACATTTGGTCATGCGGGGTCATACTGTTCGTCCTCATGGCGGGCTACTTGCCGTTCCAGGACGCGAATCTGATGATCATGTATAAGAAGATCCACAAGGGAGACTACAAGTGCCCGCCCTGGTTTTCCTCTGAAGTCCGCCGGCTCGTCCTCCGGTTGCTAGACCCTAATCCCCAGACGAGGGTCACTGTCCCGCAGCTGATGGAGGTCCCTTGGTTCCGCCGGGGCTTCCAGCGCCCGCAGGCCGATAAAGACGTCACTGTCGATCTCCTCGATGATGTTGACTCTGCGTTTTCCGTGCTGAAGCCGGCTTGCTTGAACGCCTTTGACATAATCTCCCTCTCGCCGGGGTTCAATCTCTCAGGGCTGTTCAAGGACGATGTGTTGAAGCAGGAGGAGGAGTCGCGGTTCACTTCGACTCAGCCGGCGTCGAGCATAGTGTCGAAGCTGGAGGAGATTGCAAGCCTGTTCCGGTTCAGCTTCAAGAAGTCGAAAGACTTCAAAATGAAGTTGCAGGGGTCGGAGGAGGGGCGGCAGGGGTACTTGTCTATTGATGCTGAGATTTTTGAGGTCACTCCCTCGTTCTTCATGGTAGAGCTTCGGAAAACCGGCGGGGATACCCTGGAATACAGTAAGTTCTGCAGGCAAGATCTAAGGCCCGGCCTCAAAGACATTGTGTGGACATGGGATGGCACTAGTCAGGAGAAATAA___TAAAATCATTGTTCAATTTCCATGATTTGATGTATATCATTGGCATGCTATTTTTCTGAAAAAACTGTGTAGCCGGAACAGAATAAATCTTCTGCTAGCGAATAGGACTGCCAACCATATTTGAAGCCATGAAACCTTTACAATATGGAAGCCAAGTAAGGAGTACCAGATGTGTACAGgCTTTTTTTTCTTGTAAATTTGTAAAAtCCA

Fln Alignment:

sp_v1.1_unigene7637___MEMKPNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKAMEKEKILKVGMMEQIKREVSTMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGNVKVSDFGLSALPEQFRKDGLLHTTCGTPAYVAPEVITKKGYDGAVADIWSCGVILFVLMAGYLPFQDANLMIMYKKIHKGDYKCPPWFSSEXXXXXXXXLDPNPQTRVTVPQLMEVPWFRRGFQRPQAXXXXXXXXXXXXDSAFSVLKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIVSKLEEIAXXXXXXXXXXXXXXXKLQGSEEGRQGYLSIDAEIFEVTPSFFMVELRKTGGDTLEYSKFCRQDLRPGLKDIVWTWDGTSQEK
D5A9K4______________MEMKSNILMGRYELGRLLGQGTFAKVYYARNLKTGESVAIKVMAKEKILKVGMIEQIKREVSVMRLVRHPNIVRLYEVMASKTKIYFVMEYVKGGELFNRVADKGKLKEEEARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDDNGVVKVSDFGLSALPEQFRQDGLLHTACGTPAYVAPEVITKKGYDGATADIWSCGVILFVLMAGYLPFQDANLMVMYKKIYKGDYKCPPWFSSEVRRLVLRLLDPNPRTRITVPQLMEVPWFRRGFKRPQADKDVNVGVLDDVDSAFFVPKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIMSKLEEIASLFRFSFKKSKDFKMKLQGSEQGRKGHLSIDAEIFEVTPSFFMVELRKTGGDTLEYSKFCSQDLRPGLKDIVWTWDGNRQEK

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
163	16		83		0.994512
172		16		83	0.994512
177		16		83	0.994512
179	16	83			0.994512
189			16	83	0.994512
223	77		11	11	0.968132
226	77			22	0.999999
227			33	66	1.0
277		37	62		1.0
284	87		12		0.992554
300			37	62	1.0
381	50		50		1.0
387			50	50	1.0
402	50	50			1.0
418		42		57	1.0
428		14		85	0.993533
433		87		12	0.992554
454	22	66		11	0.999999
480	87			12	0.992554
483		85		14	0.993533
491		14	85		0.993533
493		85		14	0.993533
498	16		83		0.994512
516	16		83		0.994512
517	16	83			0.994512
520		83	16		0.994512
524			20	80	0.995493
525	20			80	0.995493
527			20	80	0.995493
1626		33		66	0.997452
1688		55	44		1.0
1726		83		16	0.994512
1811		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1170	1181	CCT CCT CCT CCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain