SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7629

Length: 1495 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7629

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U3 small nucleolar RNA-associated protein, putative	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Small-subunit processome, Utp11	IPR007144	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM47

Fln msg:

Fln protein: MSSLRNAVKRRAHKERAQPAGRSKFGLLEKHKDYVLRARDYHEKQKNIQRLQEKAASRNPDEFYFKMIKTKTVDGVHRPKSRAKQYSNEELLLMKTQDIQYVLQKAQSEKKKVERLQSSLHCIGCPPSNKHTYFAEDREEAKELEQLILSKKEKAIIPAQLPKRIKGKVAAAYKELEERKKRADEMQNIVMEMSLRKELMGKGRKRKLRDDEIVNPTAGPVYKWRKERKR*

Protein Length: 232

Fln nts: ATGGGGAGGTCTTTGCAGCGCTAGGCTTTTGTTTTGTTTATTTCATCGGTTTTTAAAAAGTAACGGAGCATAGTCGAAAGGCAAAATTGCCATTGTGGTTCTTTGAAACATATTTCCGTATCGATTATAATATAAACAGCTGGATTTTCACTAGTATTCATGACATTTTTTGGCTTTGAAAATTCCCGTTAGTTCCCTGCTTGCGAGCCAAACTCTAGATACATCCTGAAAGAATCTCCCGGTCTCCAGCTTTTTCCTGCACCTATCAGGCTGAAGCTCAGGAAATCTATATGTTAATTAAGTGAAGGTTGAATCTGAAGCGGTTGCCCTCTTGAACTCACCCACTGGTCCACTGAACAGGGCTTTAAAGCCTGAACTGAATTTTGCACAGCAGCAACGAACTCTGGACTCGACAGCTTGAGATTTACGTTATCTAGTTTTCAATT_-_ATGTCGTCGTTAAGAAATGCTGTAAAGCGGCGGGCTCACAAGGAACGCGCTCAACCGGCTGGAAGGAGTAAATTTGGGTTACTAGAGAAACACAAGGACTATGTACTCAGGGCTCGTGATTACCACGAGAAACAGAAAAACATCCAGAGGCTTCAAGAGAAAGCAGCATCTAGAAACCCCGATGAATTTTATTTCAAGATGATCAAAACTAAGACTGTTGATGGAGTGCACCGTCCAAAGAGTCGTGCAAAGCAATATTCCAACGAGGAACTGTTATTAATGAAGACCCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAAAAGAAGAAAGTAGAGCGACTTCAGTCTTCACTTCATTGCATTGGTTGCCCTCCTTCAAACAAACACACTTATTTTGCCGAAGACAGGGAGGAGGCAAAAGAACTGGAACAACTAATCTTATCAAAAAAAGAGAAGGCAATTATTCCTGCTCAATTGCCAAAGCGTATAAAAGGGAAAGTTGCCGCAGCATACAAGGAGCTAGAGGAAAGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTATGGAAATGAGTTTGCGGAAGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGACGATGAAATTGTTAATCCAACAGCAGGACCAGTTTATAAGTGGCGCAAGGAACGGAAAAGATGA___TTTGTCGACTTCATTGAGCAGAACTCACGTTGTAATTGAGACATTATAGAAAGAGAGCATGGAATCCCTTTTTGAAGAATTTGGATGAAAATGTTGGGAAATCAGCACTGCTATGTGTTTATCAATACAAAGAACATGAGTTTGGATTGAAGAATACATGATATGAAATCTCTCTACATAGGATGTAGGTGTTGTGGCCAGGGCTTATGTGTAACTTGTTTAAAACCCCTATATTGCTGACAGTAACATGGAAGAAAACTTTTTCCCAACGTATTTTAAATCCTTGTGCTATTCTAATTGCCTAGAGGATGAATAAACCAGTGAAAAATATAATAACCAAATTCTGGGATTATAAG

Fln Alignment:

sp_v1.1_unigene7629___MSSLRNAVKRRAHKERAQPAGRSKFGLLEKHKDYVLRARDYHEKQKNIQRLQEKAASRNPDEFYFKMIKTKTVDGVHRPKSRAKQYSNEELLLMKTQDIQYVLQKAQSEKKKVERLQSSLHCIGCPPSNKHTYFAEDREEAKELEQLILSKKEKAIIPAQLPKRIKGKVAAAYKELEERKKRADEMQNIVMEMSLRKELMGKGRKRKLRDDEIVNPTAGPVYKWRKERKR
B8LM47______________MSSLRNAVKRRTHKERAQPAARSKFGLLEKHKDYVLRARDYHKKQENIQRLREKAASRNPDEFYFKMINTRTVDGVHRPQSGAKQYSSEELLLMKTQDIQYVLQKAQSEKKKAERLQSALHCIGCRPSNRHTYFAEDREEAKELEQVILSSEEKAIFPAKLPKRIKRKMAGAYKELEERKKRADEMQNIVTEMSLRKELMGKGRKRKLRDDEIVHPTSGPVYKWRKERKR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1279	9		90		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain