SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7620

Length: 3451 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7620
TTTCACGTCGTGACCTTGGCTGTCACTCAGTTTTGTGTTCTCCCGCGTGGTTTGCGATCATTTTGCGGGACAGAACCCTCGACGGAGCTCGCCGTGTCCGACAACGCCACGTTTTGGCGGCCGCATATGCATCCCGATCATCTCGGCGCTCCATTGATGTAGCACCGTTGTCCCAATGCTGTAGATTTAGAGCAAATAGGCCCCGATTTCGGCTCATTTTAGGCCCAGATTTTGTAAATTTCGACTCTGTTGGATCCTTTGGTGAAGATTTGGGTTCGTCATACAGCTCGGGCCCATTCAGACTCTCAGCCCTATTAAATTAGATGCAGAGGGCGAAGGTCTGAAAATTTGGAAGAATTTATCGCGTTTTGTTTTCCTCTGGTCGCAGTTCTCTGAAGTTTCAAATGTTTTGAGTTGAGATTGGTGCATTTTGAGCCAGATTTGGTCTATTTTGCCTTCCATCCGATTTTTTAAGAGAGGGGCTTTAGAACATCGCATTGGCGCCCCAACGCCGAGCCCATCGCCACATTGGTGGCCAGATGCCGCAGAGCAGCGCCGCGGCTCTGTATGATTACGGGGTTTCCCTGCACAACATGGGGAGCTCTATCGATTCCAGCGATCCAGTCACGGCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCTTTCCCCTGAGTTGCGGGGGGAGTTTGGGGCAGGGCTCTTGGATCTGCATGCCATGGATGACACCGAGTTGTTTAGTGAGCACGCAGTTTCAGAACCTTTTGAAACATCACCATTTCTCCCAATGGTTGAGAAGGATTCTGGTACAACGATTGATATTGGCAAGCAACTAAAGGCACCAATGGATAATGCTTTCAAATCATCGTTGGTTGACAAAGAGCCGAGTGGAAAGGAGAGCAATTTGGCAAAGATTAAAGTTGTGGTTCGGAAAAGACCTTTGAATAAAAAGGAGTTGGCGAGGAAGGAGGAAGATATTATCACTGTTAATGATAATGTCTGGTTAAGTGTTCACGAACCAAAGTTGAAGGTGGATTTGACAGCTTATGTGGAGAAACACGATTTCGTGTTTGATGCTATTTTAGATGAACGTGTCTCAAATGATGAAGTTTATCGAGTTACTGTGGAGCCCATTGTTCCAACCATCTTTCAGCGTACAAAAGCTACATGCTTTGCATACGGTCAAACAGGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTAAGAGCCTCAGAGGATATACTTAAGTTGATGAACAGAACTTTATATCGAGAGCAAGGGTTTCGCTTGTGGCTTAGTTTCTTTGAGATATATGGGGGCAAACTATATGATCTTCTTGGTGACAGGAGGAAATTGTGTATGAGGGAGGATGCCCGGCAACAAGTTTGCATTGTTGGTTTGCAAGAATTTGAAGTCTCAGACATACAATGTGTAAAGGAGTATATTGAGAAAGGGAATGGAGCCCGAAGCACAGGTTCAACTGGAGCTAATGAAGAGTCATCCAGGTCTCATGCTATCTTGCAGCTTGCAATTAAGAAGCATGGTGAAGGAAAAGAGTCTAAGGGCGGTAGAATAGTTGGGAAGCTATCTTTTATTGATCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACAAGGATGGAGGGAGCGGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTAGATAATGACCAAATTCATATTCCATTTCGAGGAAGCAAGTTGACGGAAGTGCTTCGTGATTCCTTTGTAGGAAACTCACGGACGGTTATGATATCATGTGTTTCTCCTAATTCGGGTTCTTGTGAGCATACACTTAATACATTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATATGAAAAAGGATCAAAGTACAAGCAGTTCAGCTCTGCCTCCAAAGGATTTGTCTTCATCCCCACCTTTGCCTTTGGAGGATGCAAGGGAGTATTCTGATTATAACCAAACTGTAGCAAATGTAGATGCTGGTAGAAGGTCTGTGGACAATCCTCAATATTACAGTCAATCTGAAGAACTTGGAAGGCTTCCTTCTAGTTTGTCATCGAGTTATCCCTTTAATAGCAGAGAGGAAAGTGGCTTTTCAGGTATGGTTGAAAACAATAGAGTTAACATGAAAGAGGGTATTGCTGGTCCTGTTACAAGTCAAAAGTCCTCTTCAGCTATGAATTCTTTTGATACATACGGGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAGGTAAGCAGAGATGAAAAACCGGACAAACAGATAAACTGGACATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAGCAGCAATTTAAGGAAGATCCTGCTTCAAATAACAATGCTCCCAGACTCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAAGCTTTAATAGCGGCCCACAGGAAGGAGATTGAAGATACAATGGATTTAGTGCGTGAGGAAATGAAAATTTTAACAGAAGTTGAGCAACCAGGCAGCCTCATAGATGACTATGTGTCCAAACTAAGTATTGTGTTATCACGGAAAGCGGCTAGTCTGGTGAGCTTGCAGGCTCGACTCGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTTAGCCTGAAAAAGAACATGTCCTTGAGATGATCCATCAAACATTTGGAAACCATTCTTTCAGCTCTGATTTTTTCTTAGGTGGTAAATTTTGCAGTTGGCATCATACCCAAGATGGAGATGTTGACTGAGAATCCATATCTCTGAAGGCCAGCTGTATATGAAATCTCTTGCTGCAACACAACAGATCGTTAGAGTTGATTTGTCATGCAATATTTCTGCGTATACTAAATTGTGAAATTTGGTGTGTTTCGTAATCTTATTGCTTCCTATTGTTATTCTACTGGGAATGCAAGATGTACCTGTTCAGAGAAAGGTGGAAGCCCCAATTAAGGTCCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTAATATGCCAGGAGCTTTTCTCTGGTGAAAACTATAGCATCTTATTATGTCTTGTAACCTTGTAACTGTTTTTACATGTTTCTGTAGAAACTGCACACTACTATGATAAAGGAACCAAGGATTGAAAATTTTATCGTCAATGATAGCTCGTAGGAGTGGCCATCCTTGAAC

Ace file of the UniGene sp_v1.1_unigene7620

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	kif4, putative; K10393 kinesin family member 2/24	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	0.0	74%
Blast2go	Golgi stack	GO:0005795	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kinesin, motor domain	IPR001752	-	0.0	74%
Blast2go	Kinesin, motor region, conserved site	IPR019821	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: your sequence is longer than subject: 799 - 509

Fln protein: MPQSSAAALYDYGVSLHNMGSSIDSSDPVTARWLQSAGLQHLAPMASTGMDHRLLPNLLMQGYGAQSLDEKQKLFKFFKGMNLGAESGSEPITPTAQSSAGLAATDGFLSPELRGEFGAGLLDLHAMDDTELFSEHAVSEPFETSPFLPMVEKDSGTTIDIGKQLKAPMDNAFKSSLVDKEPSGKESNLAKIKVVVRKRPLNKKELARKEEDIITVNDNVWLSVHEPKLKVDLTAYVEKHDFVFDAILDERVSNDEVYRVTVEPIVPTIFQRTKATCFAYGQTGSGKTFTMQPLPLRASEDILKLMNRTLYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLAIKKHGEGKESKGGRIVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNMKKDQSTSSSALPPKDLSSSPPLPLEDAREYSDYNQTVANVDAGRRSVDNPQYYSQSEELGRLPSSLSSSYPFNSREESGFSGMVENNRVNMKEGIAGPVTSQKSSSAMNSFDTYGDEKVQKVSPTRRKVSRDEKPDKQINWTSKEDGKSEAFNAVRKQQQQFKEDPASNNNAPRLKERVQTDYDNDINAILQEEEALIAAHRKEIEDTMDLVREEMKILTEVEQPGSLIDDYVSKLSIVLSRKAASLVSLQARLARFQNRLKEQEILSLKKNMSLR*

Protein Length: 800

Fln nts: TTTCACGTCGTGACCTTGGCTGTCACTCAGTTTTGTGTTCTCCCGCGTGGTTTGCGATCATTTTGCGGGACAGAACCCTCGACGGAGCTCGCCGTGTCCGACAACGCCACGTTTTGGCGGCCGCATATGCATCCCGATCATCTCGGCGCTCCATTGATGTAGCACCGTTGTCCCAATGCTGTAGATTTAGAGCAAATAGGCCCCGATTTCGGCTCATTTTAGGCCCAGATTTTGTAAATTTCGACTCTGTTGGATCCTTTGGTGAAGATTTGGGTTCGTCATACAGCTCGGGCCCATTCAGACTCTCAGCCCTATTAAATTAGATGCAGAGGGCGAAGGTCTGAAAATTTGGAAGAATTTATCGCGTTTTGTTTTCCTCTGGTCGCAGTTCTCTGAAGTTTCAAATGTTTTGAGTTGAGATTGGTGCATTTTGAGCCAGATTTGGTCTATTTTGCCTTCCATCCGATTTTTTAAGAGAGGGGCTTTAGAACATCGCATTGGCGCCCCAACGCCGAGCCCATCGCCACATTGGTGGCCAG_-_ATGCCGCAGAGCAGCGCCGCGGCTCTGTATGATTACGGGGTTTCCCTGCACAACATGGGGAGCTCTATCGATTCCAGCGATCCAGTCACGGCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCTTTCCCCTGAGTTGCGGGGGGAGTTTGGGGCAGGGCTCTTGGATCTGCATGCCATGGATGACACCGAGTTGTTTAGTGAGCACGCAGTTTCAGAACCTTTTGAAACATCACCATTTCTCCCAATGGTTGAGAAGGATTCTGGTACAACGATTGATATTGGCAAGCAACTAAAGGCACCAATGGATAATGCTTTCAAATCATCGTTGGTTGACAAAGAGCCGAGTGGAAAGGAGAGCAATTTGGCAAAGATTAAAGTTGTGGTTCGGAAAAGACCTTTGAATAAAAAGGAGTTGGCGAGGAAGGAGGAAGATATTATCACTGTTAATGATAATGTCTGGTTAAGTGTTCACGAACCAAAGTTGAAGGTGGATTTGACAGCTTATGTGGAGAAACACGATTTCGTGTTTGATGCTATTTTAGATGAACGTGTCTCAAATGATGAAGTTTATCGAGTTACTGTGGAGCCCATTGTTCCAACCATCTTTCAGCGTACAAAAGCTACATGCTTTGCATACGGTCAAACAGGTAGTGGAAAGACATTTACAATGCAGCCTTTGCCACTAAGAGCCTCAGAGGATATACTTAAGTTGATGAACAGAACTTTATATCGAGAGCAAGGGTTTCGCTTGTGGCTTAGTTTCTTTGAGATATATGGGGGCAAACTATATGATCTTCTTGGTGACAGGAGGAAATTGTGTATGAGGGAGGATGCCCGGCAACAAGTTTGCATTGTTGGTTTGCAAGAATTTGAAGTCTCAGACATACAATGTGTAAAGGAGTATATTGAGAAAGGGAATGGAGCCCGAAGCACAGGTTCAACTGGAGCTAATGAAGAGTCATCCAGGTCTCATGCTATCTTGCAGCTTGCAATTAAGAAGCATGGTGAAGGAAAAGAGTCTAAGGGCGGTAGAATAGTTGGGAAGCTATCTTTTATTGATCTTGCTGGAAGTGAACGTGGGGCAGACACAACAGACAATGATCGCCAAACAAGGATGGAGGGAGCGGAAATCAACAAGAGCCTTCTGGCTCTAAAAGAGTGTATACGGGCCTTAGATAATGACCAAATTCATATTCCATTTCGAGGAAGCAAGTTGACGGAAGTGCTTCGTGATTCCTTTGTAGGAAACTCACGGACGGTTATGATATCATGTGTTTCTCCTAATTCGGGTTCTTGTGAGCATACACTTAATACATTGAGATATGCAGATAGGGTTAAAGGGCTTTCAAAGAGCAGTAATATGAAAAAGGATCAAAGTACAAGCAGTTCAGCTCTGCCTCCAAAGGATTTGTCTTCATCCCCACCTTTGCCTTTGGAGGATGCAAGGGAGTATTCTGATTATAACCAAACTGTAGCAAATGTAGATGCTGGTAGAAGGTCTGTGGACAATCCTCAATATTACAGTCAATCTGAAGAACTTGGAAGGCTTCCTTCTAGTTTGTCATCGAGTTATCCCTTTAATAGCAGAGAGGAAAGTGGCTTTTCAGGTATGGTTGAAAACAATAGAGTTAACATGAAAGAGGGTATTGCTGGTCCTGTTACAAGTCAAAAGTCCTCTTCAGCTATGAATTCTTTTGATACATACGGGGATGAGAAGGTGCAGAAGGTTTCCCCAACACGTCGGAAGGTAAGCAGAGATGAAAAACCGGACAAACAGATAAACTGGACATCTAAAGAAGATGGCAAGTCTGAGGCATTTAATGCTGTCAGAAAGCAACAGCAGCAATTTAAGGAAGATCCTGCTTCAAATAACAATGCTCCCAGACTCAAGGAAAGGGTACAAACTGATTATGATAATGATATAAATGCAATACTTCAGGAGGAGGAAGCTTTAATAGCGGCCCACAGGAAGGAGATTGAAGATACAATGGATTTAGTGCGTGAGGAAATGAAAATTTTAACAGAAGTTGAGCAACCAGGCAGCCTCATAGATGACTATGTGTCCAAACTAAGTATTGTGTTATCACGGAAAGCGGCTAGTCTGGTGAGCTTGCAGGCTCGACTCGCAAGGTTTCAGAACCGTCTCAAGGAGCAAGAGATACTTAGCCTGAAAAAGAACATGTCCTTGAGATGA___TCCATCAAACATTTGGAAACCATTCTTTCAGCTCTGATTTTTTCTTAGGTGGTAAATTTTGCAGTTGGCATCATACCCAAGATGGAGATGTTGACTGAGAATCCATATCTCTGAAGGCCAGCTGTATATGAAATCTCTTGCTGCAACACAACAGATCGTTAGAGTTGATTTGTCATGCAATATTTCTGCGTATACTAAATTGTGAAATTTGGTGTGTTTCGTAATCTTATTGCTTCCTATTGTTATTCTACTGGGAATGCAAGATGTACCTGTTCAGAGAAAGGTGGAAGCCCCAATTAAGGTCCTTGGATTCATGACTTTACAATGTTCCCATTCAAATTTATTAATATGCCAGGAGCTTTTCTCTGGTGAAAACTATAGCATCTTATTATGTCTTGTAACCTTGTAACTGTTTTTACATGTTTCTGTAGAAACTGCACACTACTATGATAAAGGAACCAAGGATTGAAAATTTTATCGTCAATGATAGCTCGTAGGAGTGGCCATCCTTGAAC

Fln Alignment:

sp_v1.1_unigene7620___MQPLPLRASEDILKLMNRTLYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLAIXXXXXXXXXXXXRIVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNMKKDQSTXXXXXXXXXXXXXXXXXXEDAREYSDYNQTVANVDAGRRSVDNPQYYSQXXXXXXXXXXXXXXYPFNSREESGFSGMVENNRVNMKEGIAGPVTSQKSSS-AMNSFDTYGDEKVQKVSPTRRKVSRDEKPDKQINWTSKEDGKSEAFNAVRKQQQQFKEDPASNNNAPRLKERVQTDYDNDINXXXXXXXXXXXXHRKEIEDTMDLVREEMKILTEVEQPGSLIDDYVSKLSIVLSRKAASLVSLQARLARFQNRLKEQEILSLKKNMSLR
D5ACB2______________MQPLPLRASEDILKLMNRPFYREQGFRLWLSFFEIYGGKLYDLLGDRRKLCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIKKHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSLSLPPKDSSSSPPLPLEDAREFSDYNQTVANTDAGRRSVDNPQYYNQSEELGRHPSSLSSSYAFTSREESGFSSLVENNRVNMRDGIAGPVTSQKSSSAAMNSFDPYGDEKVHKVSPTRRKVSREEKPDKQINWISKEDGKSEAFNAVRKQQQQFKEDPASNNTAPRLKERVQTDYDNDINAILQEEEALIAAHRKEIEDTMDLVREEMKILTEVEQPGSLIDDYVSKLSIVLSRKAASLVSLQARLARFQNRLKEQEILSLKKNMSLR

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
31	25		62	12	1.0
32			12	87	0.992554
33			25	75	1.0
34			25	75	1.0
35			25	75	1.0
36			87	12	0.992554
133			12	87	0.992554
188			11	88	0.923564
189			11	88	0.923564
196	69	30			1.0
197	69		30		1.0
199	66	33			1.0
203	33	8			1.0
207		66		33	1.0
208		66	33		1.0
210	66	33			1.0
212			33	66	1.0
216	33		66		1.0
354		13		86	0.999973
355			13	86	0.999973
357		13	86		0.999973
360	86			13	0.999973
363	86	13			0.999973
364		13		86	0.999973
367	86		13		0.999973
368			14	85	0.999981
372	14		85		0.999981
373		15		84	0.999986
375		15		84	0.999986
376	15			84	0.999986
558	85		14		0.993533
635		33	66		0.997452
1260	16		83		0.994512
1445	80		20		0.995493
1446		20	80		0.995493
1451			20	80	0.995493
1487			75	25	0.996473
1488		75	25		0.996473
1489	75		25		0.996473
1524		20		80	0.995493
1525	80		20		0.995493
1527		20	80		0.995493
1529			80	20	0.995493
1531	20		80		0.995493
1533	80	20			0.995493
1534	80			20	0.995493
1535	80			20	0.995493
1536		80	20		0.995493
1537			20	80	0.995493
1538	80	20			0.995493
1540	80		20		0.995493
1542		20	80		0.995493
1546	20			80	0.995493
1697	20			80	0.999996
1823		14		85	0.993533
2713		44		55	1.0
2804	90		10		0.90298
2806	90		10		0.90298
2956	86		13		1.0
3055	71			28	1.0
3105		74		25	1.0
3133			33	66	1.0
3238			60	40	1.0
3247	60	40			1.0
3252		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain