SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7615

Length: 1254 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7615

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Homeobox-leucine zipper protein HAT14, putative	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	Identity
Blast2go	Homeodomain	IPR001356	-	72%
Blast2go	Leucine zipper, homeobox-associated	IPR003106	-	72%
Blast2go	Homeodomain-like	IPR009057	-	72%
Blast2go	Homeodomain-related	IPR012287	-	72%
Blast2go	Homeobox, conserved site	IPR017970	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX56

Fln msg:

Fln protein: MEETKQRGLERLKTLANDDTTGLALGVGLSIAMPATTTQEDDQKSAPLQLELLPFRPIASRVGTSPAPSPPFRWFMPNNCREEVTVAETNLSGVARGGGGGIDMNRVPSTNEYEESAVFQADALRVVDNGPMAVKRERERAFDLEAERDRTCDVSSRTSDEEEIGSTRKKLRLSKEQSALLEESFREHSTLNPQKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAAPQPCVIGQDNYYMPLPATTLTMCPSCERVATMENSRSLQFSKSQISQFAQQSAAC*

Protein Length: 318

Fln nts: ATGGGGGACTTATTTTTCGTGAGAGCTGCCTTTGCGTTCTAAGCCGTGTTCTGGAAGTTGAGAGAGAGGGGTTTCAGAGGTTGGAACTGTGTGGCCTTGAGCCAAAGTGTACTATACGACTTTCATCATCCCTGACGTCTGGTGAGGCAGGATATATTTTGGGGTTGGACTTGCCTGGTTCCTTTTGTGTGAGGATTATTC_-_ATGGAGGAGACGAAGCAGAGAGGTCTGGAACGGCTGAAGACTTTGGCAAATGATGATACCACTGGTTTGGCTCTCGGCGTGGGTCTGTCTATCGCGATGCCTGCCACAACAACGCAAGAAGATGACCAGAAAAGCGCGCCGCTGCAACTCGAACTCTTGCCCTTTCGCCCCATCGCTTCCCGCGTTGGGACTTCTCCGGCGCCTTCCCCGCCGTTTCGCTGGTTCATGCCCAATAACTGCCGGGAAGAGGTGACGGTAGCGGAGACGAATCTGTCCGGGGTCGCGCGCGGCGGCGGCGGAGGAATAGACATGAATCGGGTTCCGTCCACAAACGAATACGAGGAATCGGCTGTTTTTCAGGCCGATGCCTTGCGGGTGGTGGACAACGGGCCGATGGCGGTGAAAAGAGAGCGAGAAAGAGCCTTTGACTTGGAGGCCGAGAGGGATCGAACCTGCGACGTGAGTTCAAGGACCAGCGACGAGGAGGAGATAGGTTCGACGAGGAAAAAGCTGCGGCTTTCCAAGGAGCAATCTGCGCTGCTTGAGGAAAGTTTCCGCGAGCACAGTACTTTGAATCCGCAGAAACAGAAGAACGCGCTGGCCAAGCAGTTGAATTTGCGCCCTAGGCAGGTCGAAGTCTGGTTTCAGAACAGAAGAGCTAGAACAAAGTTGAAGCAGACGGAAGTAGATTGCGAGGTTCTGAAGCGCTGCTGCGAAAATCTAACCGAGGAGAACAGGAGGCTGCAGAAAGAACTGCAAGAGCTAAGGGCTTTAAAGGCGGCGCCTCAGCCGTGCGTGATAGGCCAGGATAATTATTACATGCCTCTGCCTGCCACCACGCTAACCATGTGCCCCTCCTGTGAAAGGGTGGCTACCATGGAAAACAGCCGAAGTCTTCAATTCTCCAAGTCACAGATTTCTCAGTTTGCCCAACAGTCCGCAGCCTGCTAG___TCTGTTATACTAAACTCATACTTCAGTTTTTTGGGTTCTTTCAAGGCTCCTTCGATAAGGTTTGCCTTGCCTTGTACGGTTAAACTCAAATCATTCCACACA

Fln Alignment:

sp_v1.1_unigene7615___MEETK--QRGLERLKTLANDDTTGLALGVGLSIAMPATTT-QEDDQKSAPLQLELLPFRPIASRVGTSPAPSPPFRWFMPNNCREEVTVAETNLSGVARGGGGGIDMNRVPSTNEYEESAVFQADALRVVDNGPMAVKRERERAFDLEAERDRTCDVSSRTSDEEEIGSTRKKLRLSKEQSALLEESFREHSTLNPQKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAAPQPCVIGQDNYYMPLPATTLTMCPSCERVATMENSRS
A9NX56______________MEETKNKQRGLERLKTSANDDTTGLALGVGLSIAMPATAAAQEEDQKNPPLPLELLPFRPIASRVGTPPAPSPPFLWFMTNNCREEVTVAETNLSGVVRGG---IDMNQVPSTNEYEESSVLQVDALRVVDNGPMAVKRERERAFDLEAERDRTCDVSSRTSDEEEIGSTRKKLRLSKEQSALLEESFREHSTLNP-KQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELRALKAAPQPCVIGQDNYYMPLPATTLTMCPSCERVATMENSHS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
725	80		13		0.999961
863	75	25			1.0
881	90		10		0.90298
928		60	40		1.0
941	87		12		0.992554
1006		81	18		0.999994
1157			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
488	500	GCG GCG GCG GCG G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain