SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7603

Length: 2843 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7603
ATGGGGACAGTCAGTGGCAGCATTGTACAGAAAATTCTGTCTGGCTAAAGTTATATTTATTTTACCATGTTGGCCTACTGATTCTGTTGGTGATATTCGCATGTAGCTGGATCCTGGGGGTTTGGTCCGACGATTCTGAGGATCGACCAGACGACCTGCTAAAGTATTGGATGAATTTTGGACAGGGCTGAGGGGTTCTCCGATCGGTATATCATGTAACGAAGAGGAGATTGGTCGGATTTTGTTCGATTGATAGCGTGGAGATTCAGGGCTAATCTGGTGTCGCTCTATTCAGTATCTGTCGTATTTACTCAAGTTTCCTTGCACATGAAAGGCTTACAGGTTTAAGGTCCATGGATCCCCCCCTACAAGAAGTGCTTGATAATATTTCTCAATCAATTCGTGGAATTGTCTCCCTGAATGAAAAGACACAGATCAATGAAGGAAACTGTCAAAGGCTCGTTGATCAATTGAATCTTTTGAAGCCTGTGATAGATGAAGTTAGGGACTCAAAGATATCTTTGACAGGATCGGGCATCAAGCTATTTAAAGAACTGGACGTGCCATTGAGTAATGCTAAGAAACTAATAGAGAGGTGTGGTGCAAAAGGCAGCAAGATTTACAGGGTGCTACGCAGACAGCAGTATATGTCCAAATTCAAAAACATTTCTTCTGAGATCTGCCGCGTGTTAAATGATTTGCCTTACCATTCTTCACATATTCCAGCTCAGACATGGATTCAGGTTGAACGTTGCATTGGGGAACTGCAGAGAGTAAACTATACATGCCAACCTTTAGACGAACAAACATTGGAAGAGTTTGAGGGTGCTCTGAGCGATCACAGAGAGAATCTTAAGATAAGTTGTGAGAAACTCAAATGGATTGCGGATAGGTTCAAGTTGATATCAAATCAAGAAGTGTTGTGGGAAGCATCTGCTCTGGAAAAGGAAAAAGAATATGTTCGCATTGAGAAGGACAAGCAGGAAGAGGAGTACATTAATCAGGTTATTGGGGTAGTCACACAAATGTGTGATCTCCTAGTAGAAGTTAAACAATCCCAAACAGAGGGAGGACCACCAATTCCTGCAGATTTTCGGTGCCCTCTTTCACTAGAACTTATGTCAGACCCAGTGATTGTGGCTTCTGGGCAAACATACGAGAGAACCTATATTCAGCAGTGGCTTGACCAAGGTATGACAACATGTCCTAAAACTCGTCAGACTCTTAGTCATACAAATATGATTCCCAATTATACAGTAAAAGCCCTGATCGCAAATTGGTGTGAGTCGAATAGTGTTCCATTACCTGAACCAGCAAAGCTTCCACCATGTACTCCATATCAAAGCCAAACCTTCCAGACAGGTCCAAGAAAAAATAAGTCAGATAATGATATGCGTTCTTGTTTATCTGAACAAGTGAATGCAGATGACTCCATGGGCAATCTTCCAGCTTCACAGTATATATCAAGCCACTTATCAATTCCTAGAGAAGACCATGCCTCTATGAATGAACGCATAGGGTTTTCTTCTGAAGCCAGTGAAGAACAAGGAAATTCAAGCACAAGAAGCGGACCTCTGATTGAAATTGGACATGAGTTACAGTCAATAAAAGAAGCTTTCAATAGAAATCATGGTCATGGGCAACTTAAAGGGCACAACCGGAGTGCTTCCCTTTCTAGTGCAACATCCAGCATAGATGATGGCCAGGTGCCAACTACTGGAGGTGCTAATGCTCACGAGGGGCTACAAGCATTGAGTGTTAGCTCTCATTATAGCAGTGATGTTTCTGAAGAGTTAACACCAACATCATCAGCTACTGGACCTCGATATAGAGAAACAGAATCTCCAACTAGATTACCTGAAAGATCAAGATTGGGTAGTTTGACTTTATGGAGGCGCCGACCTGAGGATCGGAATACCGTGCTTAGGATTCTTTCTTCTTCAGTATCAGACACAAGGGGTGAAGGTCCAAGTATTCAACTACAAGTTGAGAAAATGATAGAGGATCTAGAATCTAACAATGTTGAAGTACAAAGAGCAGCTGCAGCAGAGTTACGTCTCCTTGCTAAGTATAACATGGAGAACAGAATAATAATTGCAAATTGTGGAGCTATCAGGCCTTTGATAGCACTGCTGCATTCTTCTGACGTGAAGACACAAGAAAATGCTGTTACTGCTTTACTGAATTTATCCATCAATGACAACAACAAGAATGAAATTGCCATTGCTGGGGCTATTGATCCACTGATATATGTACTGAAGACGGGAAATCCTGAAGCGAGAGAGAATGCTGCTGCAACATTATTCAGTCTTTCTGTCATGGAAGAAAATAAAATCAGTATTGGTCAATCAGGTGCTATTCCACCTTTGGTGGATCTGCTTAGGGATGGTACTCCTCGAGGAAAGAAGGATGCTGCCACTGCTTTATTTAATCTTTCTATTTATCATGACAACAAGGCTCGCATAGTAAGGGCTGGAGCCGTAAAATCTCTTGTTGAGCTGATGGACCCTGCAGCTGGAATGGTAGACAAGGCTGTTGCTGTATTGTCCAATCTTTCAACTATTCCTGAAGGTCGATTTGCAATTGGTGAGGAGGGTGGCATTCCTGCTTTGGTTGAGGTAGTGGAGCTAGGTTCTCAGAGGGGAAAGGAAAATGCCACTGCAGCTTTACTGCAACTTTGTACAAATAGCAATAGGTTTCGTGCTATGGTTTTACAAGAAGGAGCTATTCCACCTTTGGTTGCATTATCACAATCTGGCACTCCACGGGCTAGAGAAAAGGCACAGGCACTTCTTCGTCATTTTAGAGATCAGAGGCATTCAGGTATAGGAAGGGGTGGCTCA

Ace file of the UniGene sp_v1.1_unigene7603

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U-box multi-domain protein	-	-	3.0e-20	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	protein	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Blast2go	Armadillo	IPR000225	-	67%
Blast2go	U box domain	IPR003613	-	67%
Blast2go	Armadillo-like helical	IPR011989	-	67%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	67%
Blast2go	Armadillo-type fold	IPR016024	-	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is longer than subject: 830 - 497

Fln protein: MDPPLQEVLDNISQSIRGIVSLNEKTQINEGNCQRLVDQLNLLKPVIDEVRDSKISLTGSGIKLFKELDVPLSNAKKLIERCGAKGSKIYRVLRRQQYMSKFKNISSEICRVLNDLPYHSSHIPAQTWIQVERCIGELQRVNYTCQPLDEQTLEEFEGALSDHRENLKISCEKLKWIADRFKLISNQEVLWEASALEKEKEYVRIEKDKQEEEYINQVIGVVTQMCDLLVEVKQSQTEGGPPIPADFRCPLSLELMSDPVIVASGQTYERTYIQQWLDQGMTTCPKTRQTLSHTNMIPNYTVKALIANWCESNSVPLPEPAKLPPCTPYQSQTFQTGPRKNKSDNDMRSCLSEQVNADDSMGNLPASQYISSHLSIPREDHASMNERIGFSSEASEEQGNSSTRSGPLIEIGHELQSIKEAFNRNHGHGQLKGHNRSASLSSATSSIDDGQVPTTGGANAHEGLQALSVSSHYSSDVSEELTPTSSATGPRYRETESPTRLPERSRLGSLTLWRRRPEDRNTVLRILSSSVSDTRGEGPSIQLQVEKMIEDLESNNVEVQRAAAAELRLLAKYNMENRIIIANCGAIRPLIALLHSSDVKTQENAVTALLNLSINDNNKNEIAIAGAIDPLIYVLKTGNPEARENAAATLFSLSVMEENKISIGQSGAIPPLVDLLRDGTPRGKKDAATALFNLSIYHDNKARIVRAGAVKSLVELMDPAAGMVDKAVAVLSNLSTIPEGRFAIGEEGGIPALVEVVELGSQRGKENATAALLQLCTNSNRFRAMVLQEGAIPPLVALSQSGTPRAREKAQALLRHFRDQRHSGIGRGGS

Protein Length: 831

Fln nts: ATGGGGACAGTCAGTGGCAGCATTGTACAGAAAATTCTGTCTGGCTAAAGTTATATTTATTTTACCATGTTGGCCTACTGATTCTGTTGGTGATATTCGCATGTAGCTGGATCCTGGGGGTTTGGTCCGACGATTCTGAGGATCGACCAGACGACCTGCTAAAGTATTGGATGAATTTTGGACAGGGCTGAGGGGTTCTCCGATCGGTATATCATGTAACGAAGAGGAGATTGGTCGGATTTTGTTCGATTGATAGCGTGGAGATTCAGGGCTAATCTGGTGTCGCTCTATTCAGTATCTGTCGTATTTACTCAAGTTTCCTTGCACATGAAAGGCTTACAGGTTTAAGGTCC_-_ATGGATCCCCCCCTACAAGAAGTGCTTGATAATATTTCTCAATCAATTCGTGGAATTGTCTCCCTGAATGAAAAGACACAGATCAATGAAGGAAACTGTCAAAGGCTCGTTGATCAATTGAATCTTTTGAAGCCTGTGATAGATGAAGTTAGGGACTCAAAGATATCTTTGACAGGATCGGGCATCAAGCTATTTAAAGAACTGGACGTGCCATTGAGTAATGCTAAGAAACTAATAGAGAGGTGTGGTGCAAAAGGCAGCAAGATTTACAGGGTGCTACGCAGACAGCAGTATATGTCCAAATTCAAAAACATTTCTTCTGAGATCTGCCGCGTGTTAAATGATTTGCCTTACCATTCTTCACATATTCCAGCTCAGACATGGATTCAGGTTGAACGTTGCATTGGGGAACTGCAGAGAGTAAACTATACATGCCAACCTTTAGACGAACAAACATTGGAAGAGTTTGAGGGTGCTCTGAGCGATCACAGAGAGAATCTTAAGATAAGTTGTGAGAAACTCAAATGGATTGCGGATAGGTTCAAGTTGATATCAAATCAAGAAGTGTTGTGGGAAGCATCTGCTCTGGAAAAGGAAAAAGAATATGTTCGCATTGAGAAGGACAAGCAGGAAGAGGAGTACATTAATCAGGTTATTGGGGTAGTCACACAAATGTGTGATCTCCTAGTAGAAGTTAAACAATCCCAAACAGAGGGAGGACCACCAATTCCTGCAGATTTTCGGTGCCCTCTTTCACTAGAACTTATGTCAGACCCAGTGATTGTGGCTTCTGGGCAAACATACGAGAGAACCTATATTCAGCAGTGGCTTGACCAAGGTATGACAACATGTCCTAAAACTCGTCAGACTCTTAGTCATACAAATATGATTCCCAATTATACAGTAAAAGCCCTGATCGCAAATTGGTGTGAGTCGAATAGTGTTCCATTACCTGAACCAGCAAAGCTTCCACCATGTACTCCATATCAAAGCCAAACCTTCCAGACAGGTCCAAGAAAAAATAAGTCAGATAATGATATGCGTTCTTGTTTATCTGAACAAGTGAATGCAGATGACTCCATGGGCAATCTTCCAGCTTCACAGTATATATCAAGCCACTTATCAATTCCTAGAGAAGACCATGCCTCTATGAATGAACGCATAGGGTTTTCTTCTGAAGCCAGTGAAGAACAAGGAAATTCAAGCACAAGAAGCGGACCTCTGATTGAAATTGGACATGAGTTACAGTCAATAAAAGAAGCTTTCAATAGAAATCATGGTCATGGGCAACTTAAAGGGCACAACCGGAGTGCTTCCCTTTCTAGTGCAACATCCAGCATAGATGATGGCCAGGTGCCAACTACTGGAGGTGCTAATGCTCACGAGGGGCTACAAGCATTGAGTGTTAGCTCTCATTATAGCAGTGATGTTTCTGAAGAGTTAACACCAACATCATCAGCTACTGGACCTCGATATAGAGAAACAGAATCTCCAACTAGATTACCTGAAAGATCAAGATTGGGTAGTTTGACTTTATGGAGGCGCCGACCTGAGGATCGGAATACCGTGCTTAGGATTCTTTCTTCTTCAGTATCAGACACAAGGGGTGAAGGTCCAAGTATTCAACTACAAGTTGAGAAAATGATAGAGGATCTAGAATCTAACAATGTTGAAGTACAAAGAGCAGCTGCAGCAGAGTTACGTCTCCTTGCTAAGTATAACATGGAGAACAGAATAATAATTGCAAATTGTGGAGCTATCAGGCCTTTGATAGCACTGCTGCATTCTTCTGACGTGAAGACACAAGAAAATGCTGTTACTGCTTTACTGAATTTATCCATCAATGACAACAACAAGAATGAAATTGCCATTGCTGGGGCTATTGATCCACTGATATATGTACTGAAGACGGGAAATCCTGAAGCGAGAGAGAATGCTGCTGCAACATTATTCAGTCTTTCTGTCATGGAAGAAAATAAAATCAGTATTGGTCAATCAGGTGCTATTCCACCTTTGGTGGATCTGCTTAGGGATGGTACTCCTCGAGGAAAGAAGGATGCTGCCACTGCTTTATTTAATCTTTCTATTTATCATGACAACAAGGCTCGCATAGTAAGGGCTGGAGCCGTAAAATCTCTTGTTGAGCTGATGGACCCTGCAGCTGGAATGGTAGACAAGGCTGTTGCTGTATTGTCCAATCTTTCAACTATTCCTGAAGGTCGATTTGCAATTGGTGAGGAGGGTGGCATTCCTGCTTTGGTTGAGGTAGTGGAGCTAGGTTCTCAGAGGGGAAAGGAAAATGCCACTGCAGCTTTACTGCAACTTTGTACAAATAGCAATAGGTTTCGTGCTATGGTTTTACAAGAAGGAGCTATTCCACCTTTGGTTGCATTATCACAATCTGGCACTCCACGGGCTAGAGAAAAGGCACAGGCACTTCTTCGTCATTTTAGAGATCAGAGGCATTCAGGTATAGGAAGGGGTGGCTCA

Fln Alignment:

sp_v1.1_unigene7603___PPIPADFRCPLSLELMSDPVIVASGQTYERTYIQQWLDQGMTTCPKTRQTLSHTNMIPNYTVKALIANWCESNSVPLPEPA
C0PSB5______________PIFPEDFRCPISLELMQDPVIVATGQTYDRLCIQRWLDLGHKTCPKTQQVLPHMTLTPNYVLRSLIAQWCESHGVEIPSKA

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
74	33	66			0.997452
154	80			20	0.995493
156		80	20		0.995493
160		20	20	60	0.99255
161	80			20	0.995493
162	80			20	0.995493
163	80		20		0.995493
165		20		80	0.995493
166	80			20	0.995493
167			20	80	0.995493
169		20	80		0.995493
170	20		80		0.995493
171	80	20			0.995493
173		20	80		0.995493
209	60			40	1.0
214	83		16		0.994512
218	83		16		0.994512
221		16	83		0.994512
222	83			16	0.994512
223	83			16	0.994512
227		16	83		0.994512
228	83			16	0.994512
232		16		83	0.994512
233	16		83		0.994512
234		16	83		0.994512
238			83	16	0.994512
239	83			16	0.994512
267	16	83			0.994512
344		20		80	0.995493
345		20		80	0.995493
454	63		36		1.0
663	50			25	0.995533
2654		33	66		0.997452
2655			66	33	0.997452
2656	66	33			0.997452
2665		75	25		0.996473
2666			25	75	0.996473
2716			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain