SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7550

Length: 1076 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7550

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] dbj\|BAB11326.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL77682.1\| AT5g47790/MCA23_11 [Arabidopsis thaliana] gb\|AAQ22637.1\| At5g47790/MCA23_11	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	nuclear inhibitor of pp1-like	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Forkhead-associated (FHA) domain	IPR000253	-	0.0	71%
Blast2go	SMAD/FHA domain	IPR008984	-	0.0	71%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
390	80			20	0.995493
416			16	83	0.994512
417		16	16	66	0.988813
575		14		85	0.993533
846	87		12		0.992554
1016	87		12		0.992554
1017		71		28	1.0
1036		25	50		0.995533
1037	25			50	0.995533
1041	66		33		0.997452
1042	66	33			0.997452
1045		66		33	0.997452
1051		33	66		0.997452
1053	66			33	0.997452
1054	33		66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
924	938	GAT GAT GAT GAT GAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain