SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7536

Length: 1219 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7536

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=A9NKP2_PICSI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ubiquitin-conjugating enzyme e2-18	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	94%

Source	GOs	Term	Type	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	94%
Blast2go	protein modification process	GO:0006464	Biological Process	94%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	94%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	94%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKP2

Fln msg:

Fln protein: MANATISSSTSTARKGLSKIACNRLQKELVEWQVNPPVGFKHKVTDNLQRWIIEVNGAPGTLYSNESYQLQVDFPEHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTIKQRPADNDHYVKNCRNGRSPKETRWWFHDDTV*

Protein Length: 168

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAATTAATCAGAGCTGAGCTTTTAGCTTGAGAGCGAAGCAAGATCGATTTGTTATCTTCTGTGTGAGCGCAAGCCATGGAGTAATTTACATTTGTCTAGCTTGGGCGTCGAGAGGCTCTGCAGTTTCATATCTAGGGATACCCTCTCCTCAATCGTACTCCGTTATTCTATTTGCACTGCGAATTACA_-_ATGGCCAATGCCACCATCAGCAGCAGTACCTCCACTGCTCGCAAGGGCCTGAGCAAGATAGCTTGCAACAGGCTTCAGAAGGAGCTGGTGGAGTGGCAGGTTAACCCCCCAGTCGGATTCAAGCACAAAGTCACAGATAATCTGCAAAGGTGGATTATTGAAGTGAATGGTGCACCGGGCACTTTATATTCCAATGAGTCCTATCAACTGCAAGTTGATTTTCCGGAGCATTATCCCATGGAAGCCCCTCAGGTTATTTTCGTCCCCCCCGCTCCTTTGCATCCTCACATCTACAGCAACGGCCATATCTGTCTAGATATTCTGTATGATTCGTGGTCCCCAGCTATGACCGTCAGCTCTATCTGCATCAGCATTCTCTCAATGCTCTCAAGCTCCACTATCAAGCAAAGGCCGGCAGATAATGATCATTATGTAAAAAATTGTAGAAATGGAAGATCACCCAAGGAGACCAGATGGTGGTTCCATGATGATACCGTGTAA___AACATAAATATTTTTAATGTTCACTTGGGTAATGGAAGACGGATCTCCAAATTTTCTACGTGGCATATATATCTTTTGGAAACAACAGGGTTTAAAATGTTTTTTTTGAAAGCTTGTTTTCAAATATGTACATGGCGTAGGTAGTAAAAAGTTCATGCAAGAGACAATACTTCCGTTGACTATGGTGTATTGATCCATATGCTTTCTATGATTACGCCACTAAGTTTGTTCTGTGAAACTATGGTTAATGAGGAACTCACGATGAGATCCTTTTTTTACCCGGTGGGAGACTATTTGATCCACTTAGTAATCTAATATCCGGAAACTATGGAATTATCGATATTGGAATCTATTGCAGTTATATTTTTCAATAACACGCGTCTTACTTTAGACTATTTTGCTCCGGGAACTCATGATGAGATCCTTTCTTTTTGCTGTGGGAGATTATTTGATCGGGGTAATAATCTGTTGTGGAAAACTATTGAACTACCAATGAGTATTGTTA

Fln Alignment:

sp_v1.1_unigene7536___RKGLSKIACNRLQKELVEWQVNPPVGFKHKVTDNLQRWIIEVNGAPGTLYSNESYQLQVDFPEHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVXXXXXXXXXXXXXXXXKQRPADNDHYVKNCRNGRSPKETRWWFHDDTV
A9NKP2______________RKGLSKIACNRLQKELVEWQVNPPVGFKHKVTDNLQRWIIEVNGAPGTLYFNESYQLQVDFPEHYPMEAPQVIFLSPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTIKQRPADNDQYVKNCRNGRSPKETRWWFHDDTV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
522	91		8		0.999766
525		8		91	0.999766
942			88	11	0.923564
1060			10	90	0.90298
1078		12		87	0.992554
1087		12		87	0.992554
1088		87		12	0.992554
1099	16		83		0.994512
1100			16	83	0.994512
1211		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain