SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7535

Length: 3022 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7535
CGTCGTGACCTTGGCTGTCACTCAAATCTCGCATAGTTTACACCCCTACCACAATCTCACCCGTATCGATACAAGTCTGCAACTGAAAGCAAAATCTTTATCGTTACCGATGTAGGAATGACATCCATCGTTGCCTTTTCGGCAACCTTTTCTTTCCGGTAACGTATTACATCCCATACTTCGCTGTCCGTGGTGGTAGGCATTTGAATCTGTCACTCAACACTGGTTTGCATTTTTGTCTGGACTTTAGTATGATTCTCCCGAATATGTTCTTTGCGTTAACAATTAATGCGGATCAGTCCAACCAACCTGGATCAGCAACCCTTCATCCAACCAATTCCCAGTCTTTTCATTTGTGGGTCCAACCGAATTGTATGATAAAAAAATTCCCCAGCTTCTGAAATCCGAAATACCCCATTGGAATGGTCTGTTTTGTATCTATTTCAATATCGAGGACCAGGCCCTGAATCGGATCTGTTAGGGGCATTTGCAGCGAAATTGTGGAAAAGGGTCATCCGGATTCGAACTCGAGACTTCCAAGATGATGCACATGACGTTTTATTGGGGGAGACAGGTGACCGTGCTGTTCGACGGCTGGAAGACTCAATCATGGCTTGGTTACTCGCTTACCCTTGTTGCTGTATTTCTTTTTTCTGTATTTCATGAGTACATTGTCAATCTGCGGTCTCGTTTCAAGGGGATTTCGAGTGGTAAAGCTGCCTCGGGCCTCACTGCTCCTCTGATTGGAAGAAACCCTAGGGCACTTGGATTTAGGGTCATGGAATCGGCCATTTTTGGTCTGAATGCAGGGCTGGGATATTTGCTCATGTTGGCAGCGATGTCTTTCAATGGGGGGGTTTTTATAGCTGTGATCCTGGGGTTTGTTGTTGGGTATTTCTTCTTCAGAAGCCATGGGGAAGTCGAAAATGAAAACACTGAAAGTCCATGTGGGTGCTCGTGAACTTCATGATCATTGTATGTTGTTGTTTTCTTTTGATGCTCTCGGTTGCAGATAATCGTGTAAATAAATTGTTCTGATGTAAGCAGCAAGGGGGGCCCCTTGCTTCGTATGTTTATTTTCTTGAATGGTTTTATTGCAGAAAAGATGAATTGGAAGCTTGTAATTCTTCGGCTTTATTTTGAGGAGCCTATTGGATATTTGGAATACTCTTGTTTCTCTGCTATATCCACTAGCACAGATTCATATTAAACCTGGATCTTTAATGGGGGCGAAAGGTTTCCAATACCTCTTTGTGCTAACTGATACAATTGGGAATGGTGCTTACTAGCACAATTCCATATAAACCTGGATCTGTGATCTGCACTGAGGGGCTTCCAAACTCTCTTGGTGCTCCTCTATAGCAATTAAAATAGGCACTTATTATCACAGATCCAGATTAAACCTGGTTCTTTAATGTACCAAGAGGTTTCAAATCCCTTTCAGTGCCAATCTGTAGCAATCTACAACTTTCTTTTTCTTTTTCTTCTTTTTCTCTGGAGAAGCTACCAGCGCTTCCTCAGTAACACCATTTTCTTCACTAGCATCAATGTCCTCTCTAAGACGTTTCTTTTCTTTCTTTCTTTTCTTCTCCGATCCAGCAAATTCCTCTGCTTCGGGTGCTTGCTTCAACAGATCAACTTCCATTTGCTCTGTTTTCTTCTTCTTCTTCTTCTTTTCACTGTCAAGTTTAGGCATGTCACCATTTTCCTTCCCAGAATTTTGAATAGCCTCTTTCATAACATCAAGGTTCTTACGAGGGGCGATGCCCTTGTCATAGAATTCTAACCTTTCCTCAACCTGCTCTCGAAGTTTCTCACCAAATATATTTGTATTCACCTCAGAGAAACAATCAATTCGAGAAGCTATGGAACATTTATTTGCCAGGTAACGTGATATACGACCTTTATTTCGAGTAGAGGCCCTCCCAATAAAAGAAGAATGAAAAATAAGACCATATTTTGGGGTGTTTCCACGTGTTTTAAGTGCCCTGAAGAGAGCTTTCTCAGCACCAAGAATCTGAAGAGTTGATGCTGGACATTTTGCAAGATTTGTAAGGCTTCCAGCATGAGATATCAACCGAGCACCCACCATTTCACCAATCAAACTTGCAAGATTTGGAGCAATATCTTGCATCTTTGACACAAGATAAGAATGAAGCTGCTTTCGATATTCTGAAAGTTCTATAACCCTTTGTGCAAACTGCTCAATGTTTATTAAGTCAATTGGAGAGATGTCTTGACCCATGGAAGCCTTAGCTGCCTCAATAATATCCTTAGCTTTGTCTTCATCACCAGTTATATCTGTCAACTCAGATATGGCATCCTCTGACAAAGTGGACTTGTCCTTCACATATTTTGCTACTCTTGCATAGATATAGTTGTCATTGATAATCTTCACCAGCTCGGGAAAATGCCATGAGTACCACTCCCTTACTCTCATGCAGAAGGTATTTATGTCTTTGTCCAAAGTATCAAGAAGACTAATAGCCTGTATAATCATGTTATCCACTCTATTGACATTAAACTTTACTTTGGCTCTGCTATAACTATGCCCAAGACCTAACTGGGCCTTCTCCAAGTCTGCTTCCTTGAGATTCTTAATGAATGTGTGAATATGAAGGCGGACTCCACGAAGAAGCTCCAAAACAAAATCATTGCTCTGGCAAGGAATTCTCAGAACTTCAAAAATTTGAGAGCCTAGCTTTGGCTCTGATATTCCCAAGCTGAATTTTGGCTTTTTCCCCTCCTTGACTTTTGGCAAGTTTAGCTCCAAAAAATTTCTCAACTCATCTGTCAACAGTCCTTCAGATACAGCATTGCACTGCTGTAGAGCATCTAAAGCAGAACTAAATGGTTGAATTGCAACAAACTTCACAACCTTCCCAAAACGATTAATATCAATGACAGAGTTCTGAACAGCTTCGATGCTCTGCCCAATTTCATCTAATCCATGGGCCTCAAATAATCCATACCCAGATGCAAATTCAAACAGCAAATATAGAGCCATTTCAGAGCGAGCTTT

Ace file of the UniGene sp_v1.1_unigene7535

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleolar protein nop56, putative n=1 Tax=Ricinus communis RepID=B9RAI8_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	nucleolar protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	87%
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ctr copper transporter	IPR007274	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NY93

Fln msg:

Fln protein: MMHMTFYWGRQVTVLFDGWKTQSWLGYSLTLVAVFLFSVFHEYIVNLRSRFKGISSGKAASGLTAPLIGRNPRALGFRVMESAIFGLNAGLGYLLMLAAMSFNGGVFIAVILGFVVGYFFFRSHGEVENENTESPCGCS*

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCTCGCATAGTTTACACCCCTACCACAATCTCACCCGTATCGATACAAGTCTGCAACTGAAAGCAAAATCTTTATCGTTACCGATGTAGGAATGACATCCATCGTTGCCTTTTCGGCAACCTTTTCTTTCCGGTAACGTATTACATCCCATACTTCGCTGTCCGTGGTGGTAGGCATTTGAATCTGTCACTCAACACTGGTTTGCATTTTTGTCTGGACTTTAGTATGATTCTCCCGAATATGTTCTTTGCGTTAACAATTAATGCGGATCAGTCCAACCAACCTGGATCAGCAACCCTTCATCCAACCAATTCCCAGTCTTTTCATTTGTGGGTCCAACCGAATTGTATGATAAAAAAATTCCCCAGCTTCTGAAATCCGAAATACCCCATTGGAATGGTCTGTTTTGTATCTATTTCAATATCGAGGACCAGGCCCTGAATCGGATCTGTTAGGGGCATTTGCAGCGAAATTGTGGAAAAGGGTCATCCGGATTCGAACTCGAGACTTCCAAG_-_ATGATGCACATGACGTTTTATTGGGGGAGACAGGTGACCGTGCTGTTCGACGGCTGGAAGACTCAATCATGGCTTGGTTACTCGCTTACCCTTGTTGCTGTATTTCTTTTTTCTGTATTTCATGAGTACATTGTCAATCTGCGGTCTCGTTTCAAGGGGATTTCGAGTGGTAAAGCTGCCTCGGGCCTCACTGCTCCTCTGATTGGAAGAAACCCTAGGGCACTTGGATTTAGGGTCATGGAATCGGCCATTTTTGGTCTGAATGCAGGGCTGGGATATTTGCTCATGTTGGCAGCGATGTCTTTCAATGGGGGGGTTTTTATAGCTGTGATCCTGGGGTTTGTTGTTGGGTATTTCTTCTTCAGAAGCCATGGGGAAGTCGAAAATGAAAACACTGAAAGTCCATGTGGGTGCTCGTGA___ACTTCATGATCATTGTATGTTGTTGTTTTCTTTTGATGCTCTCGGTTGCAGATAATCGTGTAAATAAATTGTTCTGATGTAAGCAGCAAGGGGGGCCCCTTGCTTCGTATGTTTATTTTCTTGAATGGTTTTATTGCAGAAAAGATGAATTGGAAGCTTGTAATTCTTCGGCTTTATTTTGAGGAGCCTATTGGATATTTGGAATACTCTTGTTTCTCTGCTATATCCACTAGCACAGATTCATATTAAACCTGGATCTTTAATGGGGGCGAAAGGTTTCCAATACCTCTTTGTGCTAACTGATACAATTGGGAATGGTGCTTACTAGCACAATTCCATATAAACCTGGATCTGTGATCTGCACTGAGGGGCTTCCAAACTCTCTTGGTGCTCCTCTATAGCAATTAAAATAGGCACTTATTATCACAGATCCAGATTAAACCTGGTTCTTTAATGTACCAAGAGGTTTCAAATCCCTTTCAGTGCCAATCTGTAGCAATCTACAACTTTCTTTTTCTTTTTCTTCTTTTTCTCTGGAGAAGCTACCAGCGCTTCCTCAGTAACACCATTTTCTTCACTAGCATCAATGTCCTCTCTAAGACGTTTCTTTTCTTTCTTTCTTTTCTTCTCCGATCCAGCAAATTCCTCTGCTTCGGGTGCTTGCTTCAACAGATCAACTTCCATTTGCTCTGTTTTCTTCTTCTTCTTCTTCTTTTCACTGTCAAGTTTAGGCATGTCACCATTTTCCTTCCCAGAATTTTGAATAGCCTCTTTCATAACATCAAGGTTCTTACGAGGGGCGATGCCCTTGTCATAGAATTCTAACCTTTCCTCAACCTGCTCTCGAAGTTTCTCACCAAATATATTTGTATTCACCTCAGAGAAACAATCAATTCGAGAAGCTATGGAACATTTATTTGCCAGGTAACGTGATATACGACCTTTATTTCGAGTAGAGGCCCTCCCAATAAAAGAAGAATGAAAAATAAGACCATATTTTGGGGTGTTTCCACGTGTTTTAAGTGCCCTGAAGAGAGCTTTCTCAGCACCAAGAATCTGAAGAGTTGATGCTGGACATTTTGCAAGATTTGTAAGGCTTCCAGCATGAGATATCAACCGAGCACCCACCATTTCACCAATCAAACTTGCAAGATTTGGAGCAATATCTTGCATCTTTGACACAAGATAAGAATGAAGCTGCTTTCGATATTCTGAAAGTTCTATAACCCTTTGTGCAAACTGCTCAATGTTTATTAAGTCAATTGGAGAGATGTCTTGACCCATGGAAGCCTTAGCTGCCTCAATAATATCCTTAGCTTTGTCTTCATCACCAGTTATATCTGTCAACTCAGATATGGCATCCTCTGACAAAGTGGACTTGTCCTTCACATATTTTGCTACTCTTGCATAGATATAGTTGTCATTGATAATCTTCACCAGCTCGGGAAAATGCCATGAGTACCACTCCCTTACTCTCATGCAGAAGGTATTTATGTCTTTGTCCAAAGTATCAAGAAGACTAATAGCCTGTATAATCATGTTATCCACTCTATTGACATTAAACTTTACTTTGGCTCTGCTATAACTATGCCCAAGACCTAACTGGGCCTTCTCCAAGTCTGCTTCCTTGAGATTCTTAATGAATGTGTGAATATGAAGGCGGACTCCACGAAGAAGCTCCAAAACAAAATCATTGCTCTGGCAAGGAATTCTCAGAACTTCAAAAATTTGAGAGCCTAGCTTTGGCTCTGATATTCCCAAGCTGAATTTTGGCTTTTTCCCCTCCTTGACTTTTGGCAAGTTTAGCTCCAAAAAATTTCTCAACTCATCTGTCAACAGTCCTTCAGATACAGCATTGCACTGCTGTAGAGCATCTAAAGCAGAACTAAATGGTTGAATTGCAACAAACTTCACAACCTTCCCAAAACGATTAATATCAATGACAGAGTTCTGAACAGCTTCGATGCTCTGCCCAATTTCATCTAATCCATGGGCCTCAAATAATCCATACCCAGATGCAAATTCAAACAGCAAATATAGAGCCATTTCAGAGCGAGCTTT

Fln Alignment:

sp_v1.1_unigene7535___MMHMTFYWGRQVTVLFDGWKTQSWLGYSLTLVAVFLFSVFHEYIVNLRSRFKGISSGKAASGLTAPLIGRNPRALGFRVMESAIFXXXXXXXXXXXXXXMSFNGGVFIAVILGFVVGYFFFRSHGEVENENTESPCGCS
A9NY93______________MMHMTFYWGRQVTVLFDGWKTQSWLGYSLTLVAVFLFSVFHEYIVNLRSRFKGVSSAKPAPGLTAPLIGRNPRAVGFRVMESAVFGLNAGLGYLLMLAAMSFNGGVFIAVILGFVVGYFFFRSHG--EEDNTESPCGCS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
21		62		37	1.0
22			37	62	1.0
23		62	37		1.0
24	62		37		1.0
60		88		11	0.923564
61		88	11		0.923564
62		88	11		0.923564
64			11	88	0.923564
103			88	11	0.923564
106	88		11		0.923564
198	88		11		0.923564
202	88			11	0.923564
204			11	88	0.923564
380	83		16		0.994512
405		84	15		0.999986
406		84	15		0.999986
852		11	88		0.923564
1061	4		8	75	1.0
1063		12	83	4	1.0
1064	12	87			1.0
1067		91	8		0.999766
1069		8		91	0.999766
1074		8		91	0.999807
1075	8			91	0.999807
1076	91	8			0.999807
1078		9		90	0.999872
1141		3		88	0.999079

SSRs (tot: 3)

Start position	End position	Sequence	Length
1469	1486	TTTCTT TTTCTT TTTCTT	18
1570	1584	TTTC TTTC TTTC TTT	15
1656	1675	TTC TTC TTC TTC TTC TTC TT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain