SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7495

Length: 2295 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7495
CGTCGTGACCTTGGCTGTCACTCAGAACAAAAACATCAGGACAGTGAAGATACTCAAGTTAAACAATGGTGGCGATAAAAAAGCTGAGAAGAAGAAGGCCAAAAAGATAAAATTCTCCATCGAGAAGCTCGAAGGAGGTACTGCAGAGGTTTCGGGTATCATGAGCGCTGTTTCGTTTGGCACACTAAAGCTGTCGGAGCCGACCATTAATGCTATTAAAGATATGGGGTTTGAGAGCATGACAGAGATTCAGGCCAGATCCATTCCAGAGCTCCTGAAAGGTTCCAATGTCTTGGGAGCTGCAAGGACTGGCTCAGGGAAGACACTTGCATTTTTAATTCCAGCTGTGGAACTGTTATACCATATATGTTTTACACCCCGCAATGGTACTGGTGTGATCATTATTTCCCCAACTCGAGAGCTTGCCATGCAGATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGTTTAGTTATAGGAGGTGCTGCACGTAGAGTTGAGGCAGAGCGACTTGCTAAAGGAGTAAACCTATTGGTTGGCACTCCTGGTAGACTTCTGGACCATCTTCAGAACACCAAAGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAAATTATTAAACTTCTTCCGAAGGATCGTCAAACTGCCCTTTTTTCTGCGACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCGACAGTAGAAGGCTTAGAGCAAGGCTATTGTGTTGTGCCAAGTGCAAAGAGATTTCTTCTTTTATTCACATTTTTGAAGAAAAACAAGTCAAAAAAGATTATGGTCTTCTTTTCTTCTTGTAACTCAGTAAAATTCCACAGCGAGCTTCTCAACTACATTGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACTTACTTTGATTTTTGTAATGCTGAGACGGGTGTATTGCTTTGTACTGATGTTGCAGCTCGAGGACTTGACATCCCAGCGGTGGATTGGATTATCCAGTATGATCCTCCTGATGATCCTAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGAAGGTGGGAGAGGCAAAGCTTTGTTATTTCTCATTCCTGAGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCTAAAGTGCCATTGCAGGAGTATCAATATGATGAAAAGAAGACTGCTAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCATCAATCTGCTCGTGATGCTTATAGATCTTACCTATTAGCGTACAATTCTCATTCTATGAAGGACATATTCAATGTACATCGTCTTGATCTTCAGGCGGTGGCTACATCTTTTGGATTTAGTTGTCCTCCTAAGGTGAACCTCAACATTGATAGCAATGCAGCAAAATTTAGAAAGAACGCAGGGAAACCTGGACAAGGTGGCAAAGTAGCTGGTAAGAAGAGTGGCCATAATTTTAGTTCAAGCAACCCTTACGGAAAACGTTCTGAAGGGGATAAGAGGCAATTTGTGCGATATTAAGAACAGTAACTTCAGTTCTAAAGCTCTTGAGAGAAGTTTTAGGTATATAAATTTAACAATGGAAAAAATTTTGTTCTCGAAGAGGCTTCAGGCCTTTGTCATTATTAATTGCTAATTTTTATCCTCCACTACAGTTGTGTAATTTATTTGTGGAGTGCATTAATTATTTTTTAGCCCATGAGAGTGGTTATCATTAACAATTATCGCATACGGTTATCAAGGCTATAGTGCAGCATATCTGACACATAGGACCTATTTCGGCAGCATAAAAATCAACGGATGTCCATGAAAGTCTTTCAGATCAGTGTGCGGTGACATGTCTGACATGACACACCACAGATTTTCTGCAGGTACTTGAGCTAAATTCCATTAGTGTTGGTATATGTATTATTAATATTACATCTAGCAATCAGAAAGATCACCTTACATAGTTGGGTGTGATAATTGCACGGTTCTGTATCTTAGCGTAATTGGACTTCTATAAACATTTGAGTTGGAAGTTATCATCATGGTTGAGCTATTTGGACCAAGATGCTGTTGTAGTCTTCTGAGACACATGAATCATTGCATTAAAACAAATTTGTAGATCGATGTTATGTATGTGCATTATTCAAGAAATTAAGAGATATATCCTT

Ace file of the UniGene sp_v1.1_unigene7495

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative; K13179 ATP-dependent RNA helicase DDX18 [EC:3.6.4.13]	-	-	73%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	82%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	83%
Blast2go	Helicase, C-terminal	IPR001650	-	83%
Blast2go	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	83%
Blast2go	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	83%
Blast2go	RNA helicase, DEAD-box type, Q motif	IPR014014	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9S9Q2

Fln msg:

Fln protein: MSAVSFGTLKLSEPTINAIKDMGFESMTEIQARSIPELLKGSNVLGAARTGSGKTLAFLIPAVELLYHICFTPRNGTGVIIISPTRELAMQIYGVAKDLMKYHKQTHGLVIGGAARRVEAERLAKGVNLLVGTPGRLLDHLQNTKGFIYKNLKYLVIDEADRILEIGFEEEMKQIIKLLPKDRQTALFSATQTTKVEDLARVSFRTAPKYIGVDDGRSKATVEGLEQGYCVVPSAKRFLLLFTFLKKNKSKKIMVFFSSCNSVKFHSELLNYIDMPCLDIHGKQKQQKRTTTYFDFCNAETGVLLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGGRGKALLFLIPEELQFLRYLKGAKVPLQEYQYDEKKTANVQSQLEKVIEKNYYLHQSARDAYRSYLLAYNSHSMKDIFNVHRLDLQAVATSFGFSCPPKVNLNIDSNAAKFRKNAGKPGQGGKVAGKKSGHNFSSSNPYGKRSEGDKRQFVRY*

Protein Length: 501

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAACAAAAACATCAGGACAGTGAAGATACTCAAGTTAAACAATGGTGGCGATAAAAAAGCTGAGAAGAAGAAGGCCAAAAAGATAAAATTCTCCATCGAGAAGCTCGAAGGAGGTACTGCAGAGGTTTCGGGTATC_-_ATGAGCGCTGTTTCGTTTGGCACACTAAAGCTGTCGGAGCCGACCATTAATGCTATTAAAGATATGGGGTTTGAGAGCATGACAGAGATTCAGGCCAGATCCATTCCAGAGCTCCTGAAAGGTTCCAATGTCTTGGGAGCTGCAAGGACTGGCTCAGGGAAGACACTTGCATTTTTAATTCCAGCTGTGGAACTGTTATACCATATATGTTTTACACCCCGCAATGGTACTGGTGTGATCATTATTTCCCCAACTCGAGAGCTTGCCATGCAGATATATGGTGTGGCAAAGGATCTCATGAAATACCATAAACAGACTCATGGTTTAGTTATAGGAGGTGCTGCACGTAGAGTTGAGGCAGAGCGACTTGCTAAAGGAGTAAACCTATTGGTTGGCACTCCTGGTAGACTTCTGGACCATCTTCAGAACACCAAAGGCTTTATATATAAGAATCTAAAGTACCTTGTTATCGATGAAGCTGATCGTATTCTGGAGATAGGTTTTGAGGAGGAAATGAAGCAAATTATTAAACTTCTTCCGAAGGATCGTCAAACTGCCCTTTTTTCTGCGACACAAACAACAAAGGTAGAAGATCTTGCACGTGTCTCATTTAGAACAGCTCCCAAGTACATTGGAGTGGATGATGGGAGATCTAAGGCGACAGTAGAAGGCTTAGAGCAAGGCTATTGTGTTGTGCCAAGTGCAAAGAGATTTCTTCTTTTATTCACATTTTTGAAGAAAAACAAGTCAAAAAAGATTATGGTCTTCTTTTCTTCTTGTAACTCAGTAAAATTCCACAGCGAGCTTCTCAACTACATTGACATGCCATGCCTTGATATTCATGGCAAGCAAAAGCAACAAAAACGAACAACCACTTACTTTGATTTTTGTAATGCTGAGACGGGTGTATTGCTTTGTACTGATGTTGCAGCTCGAGGACTTGACATCCCAGCGGTGGATTGGATTATCCAGTATGATCCTCCTGATGATCCTAGGGAGTACATCCACAGGGTGGGTCGAACTGCCCGAGGTGAAGGTGGGAGAGGCAAAGCTTTGTTATTTCTCATTCCTGAGGAGTTACAGTTTCTTCGATACCTGAAGGGTGCTAAAGTGCCATTGCAGGAGTATCAATATGATGAAAAGAAGACTGCTAATGTGCAATCACAACTGGAGAAAGTGATTGAAAAGAATTATTATCTTCATCAATCTGCTCGTGATGCTTATAGATCTTACCTATTAGCGTACAATTCTCATTCTATGAAGGACATATTCAATGTACATCGTCTTGATCTTCAGGCGGTGGCTACATCTTTTGGATTTAGTTGTCCTCCTAAGGTGAACCTCAACATTGATAGCAATGCAGCAAAATTTAGAAAGAACGCAGGGAAACCTGGACAAGGTGGCAAAGTAGCTGGTAAGAAGAGTGGCCATAATTTTAGTTCAAGCAACCCTTACGGAAAACGTTCTGAAGGGGATAAGAGGCAATTTGTGCGATATTAA___GAACAGTAACTTCAGTTCTAAAGCTCTTGAGAGAAGTTTTAGGTATATAAATTTAACAATGGAAAAAATTTTGTTCTCGAAGAGGCTTCAGGCCTTTGTCATTATTAATTGCTAATTTTTATCCTCCACTACAGTTGTGTAATTTATTTGTGGAGTGCATTAATTATTTTTTAGCCCATGAGAGTGGTTATCATTAACAATTATCGCATACGGTTATCAAGGCTATAGTGCAGCATATCTGACACATAGGACCTATTTCGGCAGCATAAAAATCAACGGATGTCCATGAAAGTCTTTCAGATCAGTGTGCGGTGACATGTCTGACATGACACACCACAGATTTTCTGCAGGTACTTGAGCTAAATTCCATTAGTGTTGGTATATGTATTATTAATATTACATCTAGCAATCAGAAAGATCACCTTACATAGTTGGGTGTGATAATTGCACGGTTCTGTATCTTAGCGTAATTGGACTTCTATAAACATTTGAGTTGGAAGTTATCATCATGGTTGAGCTATTTGGACCAAGATGCTGTTGTAGTCTTCTGAGACACATGAATCATTGCATTAAAACAAATTTGTAGATCGATGTTATGTATGTGCATTATTCAAGAAATTAAGAGATATATCCTT

Fln Alignment:

sp_v1.1_unigene7495___MSAVSFGTLKLSEPTINAIKDMGFESMTEIQARSIPELLKGSNVLGAARTGSGKTLAFLIPAVELLYHICFTPRNGTGVIIISPTRELAMQIYGVAKDLMKYHKQTHGLVIGGAARRVEAERLAKGVNLLVGTPGRLLDHLQNTKGFIYKNLKYLVIDEADRILEIGFEEEMKQIIKLLPKDRQTALFSATQTTKVEDLARVSFRTAPKYIGVDDGRSKATVEGLEQGYCVVPSAXXXXXXXXXXXXXXXXXIMVFFSSCNSVKFHSELLNYIDMPCLDIHGKQKQQKRTTTYFDFCNAETGVLLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGGRGKALLFLIPEELQFLRYLKGAKVPLQEYQYDEKKTANVQSQLEKVIEKNYYLHQSARDAYRSYLLAYNSHSMKDIFNVHRLDLQAVATSFGFSCPPKVNLNIDSNAAKFRKNAGKPGQGGKVAGKKSG-HNFSSSNPYGKRSEGDKRQFVRY
A9S9Q2______________MSTTSFESLPVSEPTKNALKDTGFSHMTEIQARSIPQLLTGRDVLGAARTGSGKTLSFVVPAVELLFHAHFMPRNGAGVIIISPTRELAMQIYGVARDILKYHKQTHGIVMGGANRRTEAEKLAKGVNFLVATPGRLLDHLQNTKGFIFKNLKCLVIDEADRILEIGFEEEMKQIIKLLPKERQTVLFSATQTTKVEDLARVSFKKAPLYIGVDDGRSKATVEGLEQGYCVVSSAERFLLLFTFLKKNLKKKIMVFFSSCNSVKFHSELLNYIDIPCLDIHGKQKQQKRTSTYFEFCNAEKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGSQGRALLFLIPEELGFLKYLKGAKVPLNEYEFPSNKIANVQSQLEKLVEKNYYLHQSARDAYRSYLLAYNSHAMKDIFNVHRLDLQAVASSFGFSCPPKVSLNLDSSAAKFRK------KGPKVEGRSSGKHGFNASNPYGKKAGGDKTKFTRY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
364		66		33	1.0
809			81	18	0.999994
1343	88		11		0.923564
1413		90	10		0.90298
1414			11	88	0.923564
1415		88	11		0.923564
1515	90		10		0.90298
1661			11	88	0.923564
1662	88		11		0.923564
1733	20			80	0.995493
1798	14			85	0.993533
1803			14	85	0.993533
1807			8	91	0.999766
1808			8	91	0.999766
1809	91		8		0.999766
1871	91		8		0.999807
1904			66	33	1.0
2088		53		46	1.0
2107	87	12			0.992554
2193	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain