SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7488

Length: 1018 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7488 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	-	-	4.0e-05	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLN3

Fln msg: Distance to subject end: 19 aas, No stop codon before M and low homology subject,

Fln protein: MQFERSTSQRNPPPGGPKQGLPRSASVRPRSQKDSLLHPLELINQDAKLPADLETKHFVLVHGGGFGAWCWYKTIALLEEISFKATAIDLTGSGIDSTDPNKIATLAQYVKPLTEFFEKLGDEEKVILVGHDVGGACISYAMEHFPSKIAKAVFISAAMVINEQRTFDIFAEEAKNPDCLLRKAQTFIYANGSTDPPTAFELEKELLRDVLFNHTPAKDVALASVSMRPIPFAPLLEKLSLTEENYGSVRRFFIEAPDDQAITPSIQENMLKSNPPEQVFQIKGSDHC

Protein Length: 289

Fln nts: GTCTCCGTCTCCCAGGTCGGTCCGTGGCGGGGACAAATGGGTTAAAGGTCGATCATCTACCCGCAAAAGTAATTTGCAGGATGAGTTATTGCAGCAGCAAGCTCTGGCATTTTTTCTGTCGCAGCAGCAGCAGCATCAACCGAAGAACGGGCGC_-_ATGCAGTTTGAACGTTCTACGTCGCAGCGAAATCCACCGCCCGGGGGACCAAAGCAGGGCCTTCCACGCAGTGCTAGCGTCAGACCGAGGTCTCAGAAGGATTCTCTGCTTCACCCGCTGGAACTCATTAACCAGGATGCTAAATTACCTGCTGATTTGGAGACAAAACATTTTGTACTTGTACATGGAGGTGGATTTGGTGCTTGGTGTTGGTACAAAACTATAGCCTTACTGGAAGAAATCAGCTTCAAAGCTACTGCAATTGATCTTACTGGCTCTGGCATAGATTCTACTGATCCGAACAAAATTGCAACCCTTGCTCAATATGTCAAGCCATTAACAGAGTTCTTTGAAAAGCTTGGTGATGAAGAGAAGGTAATTCTGGTTGGCCATGATGTTGGAGGCGCATGCATATCATATGCAATGGAACATTTTCCATCAAAGATTGCTAAAGCTGTCTTTATTTCTGCTGCTATGGTCATCAATGAACAGAGAACATTTGATATTTTTGCTGAAGAGGCTAAGAACCCAGATTGTCTTCTGCGGAAGGCACAGACATTTATCTATGCAAATGGAAGTACAGATCCTCCCACAGCGTTTGAGCTCGAGAAAGAATTATTGAGAGATGTATTATTTAACCACACCCCTGCCAAGGATGTGGCACTGGCTTCAGTCTCAATGAGACCTATTCCATTTGCACCACTTCTAGAAAAACTCTCTCTTACTGAAGAGAATTATGGCTCCGTGCGTCGTTTCTTCATTGAGGCACCTGATGATCAAGCCATTACGCCTTCTATTCAGGAAAACATGTTAAAATCAAATCCTCCAGAACAGGTGTTTCAGATTAAGGGCAGTGACCATTGC

Fln Alignment:

sp_v1.1_unigene7488___HFVLVHGGGFGAWCWYKTIALLEEISFKATAIDLTGSGID-STDPNKIATLAQYVKPLTEFFEKLGDEEKVILVGHDVGGACISYAMEHFPSKIAKAVFISAAMVINEQRTFDIFAEEAKNPDCLLRKAQTFIYA---NGSTDPPTAFELEKELLRDVLFNHTPAKDVALASVSMRPIPFAPLLEKLSLTEENYGSVRRFFIEAPDDQAITPSIQENMLKSNPPEQVFQIKGSDH
A9NLN3______________HFVLIHGLGHGAWCWYKIVTLLKQKGHTVAALDLTSNGINRAASTDQVKSIAHYAEPLLQYIGNLGNDEKVTLVGHSLGGCPLSYAMEMYPTKISKAIFISAFTPRNNQSFLS-----SANPKTFPRLVENGVVVPNMEADSELPISASLALDHVKSYLYNKSPVEDANLAESLLTSTPFPISVEFLKLSEESYGSIRRFYIVLMKDRLFPPEYQEYSIAQNPPEKVFKMHASDH

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
201	50		50		1.0
359	83			16	0.994512
360	14			85	0.993533
391	85		14		0.993533
535	14		85		0.993533
663		85	14		0.993533
665		85		14	0.993533
666		85	14		0.993533
668	85	14			0.993533
670			14	85	0.993533
674	14	85			0.993533
675		85	14		0.993533
676			14	85	0.993533
677		85		14	0.993533
680		14		85	0.993533
685	85		14		0.993533
727	90		10		0.90298
728			10	90	0.90298
735		10		90	0.90298
737	90	10			0.90298
739		20	80		0.995493
741		20	80		0.995493
743			20	80	0.995493
745		80	20		0.995493
747	20		80		0.995493
810		66	16	16	0.988813
811		83	16		0.994512
813	16			83	0.994512
816	16	16		66	0.988813
817	16	16		66	0.988813
818	16			83	0.994512
819		16	83		0.994512
820	16		83		0.994512
821		16		83	0.994512
822		83		16	0.994512
823	16	66	16		0.988813
825		66	33		1.0
827	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
884	898	TGC TGC TGC TGC TGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain