SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7430

Length: 964 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene7430 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein	-	-	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQZ8

Fln msg: your sequence is shorter than subject: 252 - 346

Fln protein: RRDLGCHSCDYKETLEQVLGDDRGEDPRVFGGVRKWTGSLSPDNRKDSADELSPWSIQTIWLMELLEGNLDAKSKLYKDPALSHLFLMNNGRYIVHKVKDTEIGSLLGNDWVRKHTAKVRQHHKNYQRTAWGKVLACLKDEGIHVSGTFSSGVCREVLKERFKSFNTLFEEIHKVQSTWTVADDQLRTELRISIAEMVIPAYRSFLGRFQQYLEHGKHPEKYIKYSPEDLEIYINELFEGTSSSMSKRKYS*

Protein Length: 253

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGATTATAAAGAGACCCTTGAGCAGGTTCTTGGAGATGACAGGGGTGAGGATCCTAGGGTGTTTGGTGGTGTGAGAAAGTGGACTGGTAGTCTTTCCCCTGACAATAGGAAAGACAGTGCAGACGAGTTGTCGCCATGGTCTATCCAGACCATTTGGCTCATGGAACTTCTAGAAGGCAATTTAGATGCAAAGTCCAAGTTATACAAGGATCCTGCCTTAAGTCACTTGTTTCTCATGAACAATGGTCGATATATAGTGCACAAAGTAAAGGATACTGAGATTGGTAGTTTGCTAGGCAATGATTGGGTGCGAAAGCATACAGCAAAAGTTCGGCAGCATCATAAAAACTATCAAAGAACTGCTTGGGGCAAAGTCCTTGCTTGCTTAAAAGATGAGGGCATACATGTCAGTGGAACCTTCTCCAGTGGTGTTTGCAGGGAAGTGCTTAAAGAAAGGTTCAAGAGTTTCAACACCTTATTTGAAGAAATCCACAAGGTACAATCTACTTGGACTGTTGCAGATGATCAACTTCGAACTGAGTTGCGCATTTCCATTGCTGAGATGGTCATCCCAGCATATCGTTCGTTTTTAGGCCGGTTTCAACAATACCTGGAACATGGCAAGCATCCAGAGAAGTATATAAAGTACAGTCCAGAAGACTTGGAGATCTATATTAATGAACTGTTTGAGGGGACATCAAGTTCCATGAGCAAGAGGAAATATTCATAA___TATAATCCATATATGTACGAAGTGCTCCTTTGTTCCACAGGTTCTATTTGTCTCATACGTGGCTTATCTGGTGCAATTGTACATGTAACAATAAGTTACTAGTTGATCCATCCTTTGTTCCACAGGTTCTATTTGTCTCATATATGGTTTGGTTTATCTGGTGCAATTGTACATGTAACATAAGTTACTAGGTAATCCATCAGAATGG

Fln Alignment:

sp_v1.1_unigene7430___SCDYKETLEQVLGDDRGEDPRVFGGVRKWTGSLSPDNRKDSADELSPWSIQTIWLMELLEGNLDAKSKLYKDPALSHLFLMNNGRYIVHKVKDTEIGSLLGNDWVRKHTAKVRQHHKNYQRTAWGKVLACLKDEGIHVSGTFSSGVCREVLKERFKSFNTLFEEIHKVQSTWTVADDQLRTELRISIAEMVIPAYRSFLGRFQQYLEHGKHPEKYIKYSPEDLEIYINELFEG
B8LQZ8______________ACDYRDTLEQVFKEDGGAEMNGVSARALDPSDVLEFRNGTNTTDSSPLSTKTIAIMELLESNLNAKSKLYKDPALSYVFLMNNGRYIVQKVKDSEIHSLLGDVWVRQHSSNVRRYHKSYQRVAWGKVLSCLRDEGIHVGGNFSSGVSKPVLKERFKNFNALFEELQKTQSTWIVADDQLQTELRISVAEMVIPAYRQFLGRFQYYLENDRHPERYIKYGPEEVEALINELFEG

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
441			69	30	1.0
442			30	69	1.0
444		69	30		1.0
447			30	69	1.0
448	30		69		1.0
449		38		61	1.0
450	30		69		1.0
452	69	30			1.0
453		30		69	1.0
454	30			69	1.0
455	30			69	1.0
456		69	30		1.0
457			30	69	1.0
461	69	30			1.0
462	69		30		1.0
465	69	30			1.0
517			88	11	0.923564
521	88			11	0.923564
522	88		11		0.923564
523	11		88		0.923564
524		11	88		0.923564
525	11			88	0.923564
526			11	88	0.923564
530	11	88			0.923564
531			11	88	0.923564
533	87			12	0.992554
536		12		87	0.992554
540		11		88	0.923564
541			88	11	0.923564
542		87	12		0.992554
543	12	87			0.992554
544		87	12		0.992554
546		87	12		0.992554
550	12			87	0.992554
551			12	87	0.992554
552		12		87	0.992554
553		12		87	0.992554
557		87	12		0.992554
558	75		12	12	0.975346
559	87	12			0.992554
560	12		87		0.992554
562	87		12		0.992554
564		12	87		0.992554
626	14			85	0.993533
658	71		28		1.0
661		85	14		0.993533
662	14			85	0.993533
666		14		85	0.993533
667	85	14			0.993533
668	16			83	0.994512
669	16	83			0.994512
670		83	16		0.994512
671			16	83	0.994512
673		16		83	0.994512
676			16	83	0.994512
677	16			83	0.994512
678		16		83	0.994512
719	60		40		1.0
769		80	20		0.995493
773	80			20	0.995493
776		20	80		0.995493
777	20			80	0.995493
778			20	80	0.995493
782	20			80	0.995493
786		80		20	0.995493
789	80	20			0.995493
792		20		80	0.995493
811		75		25	0.996473
948	66	33			0.997452
949	33		66		0.997452
950	33			66	0.997452
954	66	33			0.997452
955			66	33	0.997452
960			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain