SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7350

Length: 1020 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene7350

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding / nucleic acid binding / nucleotide binding / protein binding / zinc ion binding	-	-	4.0e-11	33%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	36%
Blast2go	rna binding nucleic acid binding nucleotide binding protein binding zinc ion binding	-	-	2.17568e-13	51%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9HPP2

Fln msg: Distance to subject end: 162 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 330 - 378

Fln protein: MDEVKIPGDDYSSKDSSLHQMSLNTAILNGDCDSIGDTDYKVDEKSISLAEKISSGSIQIFENESMLDAVDRSTATGFQMPEDVDIVRNSHASCGKLECLEKLGCNILPEVDMNDSDGGENSIISNILSLNFDTDDTSLNSPHSLAKLLLSETDKCNGLSKEISSSWKSQNSKQSRFLFARSEDSTERSSDYSTPNLATSRELQGELANEKDALGISNQHDQLKLNTPSNTTLTANMQGFQSISEGSTFLIPSEALVMHPSVSRTPHSAPPGFSIPNKVHSIPPPGFFLETKTERADECGMSAVCDNQGEACENSVSLSNMAWSACSQPC

Protein Length: 331

Fln nts: ATTGCATCAGAAACAGAGGTGCTTTCCTCA_-_ATGGATGAGGTCAAAATTCCAGGAGATGATTATAGTTCTAAAGATAGTTCTCTACATCAAATGTCTCTAAATACTGCAATCCTTAATGGTGACTGTGACAGCATTGGAGATACTGATTATAAAGTAGATGAAAAATCAATTTCACTTGCTGAAAAGATTAGTTCAGGTTCTATCCAAATTTTTGAAAATGAGTCTATGTTAGATGCAGTGGATAGAAGCACAGCGACTGGTTTTCAAATGCCAGAGGACGTAGATATTGTTAGAAATTCTCATGCCAGTTGTGGAAAGCTAGAATGCTTGGAGAAACTGGGGTGTAATATCCTTCCAGAAGTGGATATGAATGACTCAGATGGTGGAGAAAACAGTATTATTTCAAACATCTTGTCTTTGAATTTTGATACAGATGATACTTCATTAAATAGCCCGCACAGTCTAGCAAAATTACTCCTTTCTGAGACTGATAAATGCAATGGGCTATCCAAGGAAATATCAAGTTCATGGAAGTCTCAGAATAGCAAGCAGTCAAGATTCTTATTTGCAAGGTCAGAAGATTCGACAGAAAGATCAAGCGATTATTCCACTCCCAATTTGGCGACGTCTAGGGAATTGCAGGGGGAGTTGGCAAATGAAAAAGATGCTTTGGGAATCTCAAATCAACATGATCAATTGAAACTCAATACGCCATCCAATACTACTTTGACCGCTAATATGCAAGGTTTTCAGAGTATTTCAGAGGGTAGCACATTCTTGATTCCTTCAGAGGCCCTAGTTATGCACCCTTCAGTTTCAAGGACTCCACATTCTGCTCCACCAGGGTTTTCTATTCCAAATAAAGTTCATTCAATTCCTCCTCCAGGCTTCTTTTTGGAAACAAAAACTGAGAGGGCTGATGAATGTGGCATGAGTGCAGTGTGTGACAATCAGGGTGAAGCTTGCGAGAACTCAGTATCATTATCAAATATGGCATGGAGTGCATGCAGTCAGCCTTGC

Fln Alignment:

sp_v1.1_unigene7350___LPEVDMNDS-DGGENSIISNILSLNFDTDDTSLNSPHSLAKLLLSETDKCNGLXXXXXXXXXXXXXXXXRFLFARSEDSTERSSDYSTPNLATSRELQGELANEKD----------ALGISNQHDQLKLNTPSNTTLTANMQGFQSISEGSTFLIPSEALVMHPSVSRTPHSAPPGFSIPNKVHSIPPPGFFLETKTERA
B9HPP2______________LGDADSNGALDVGESSIISNILSLDLDAWDNSLTSPQNLAK-LLSETDKQPSSLKMSSNWKVQNNNNQSRFSFARQEELRSQTLGVD-PSLNVFGKLSNNYSSNQDFGENRNSYSEKLGIGNSFSSSIFEEPENFTFS-----------------PSTFSSNRPPISRSQISAPPGFSVPSRA---PPPGFSSHERMEQS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
124		33		66	0.997452
680	85		14		0.993533
812		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain